HEADER DNA 15-JUN-09 2KK5 TITLE HIGH FIDELITY BASE PAIRING AT THE 3'-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*CP*GP*CP*GP*(2AU))-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS ANTHRAQUINONE-LINKED DNA EXPDTA SOLUTION NMR NUMMDL 3 AUTHOR A.PATRA,C.RICHERT REVDAT 2 08-SEP-09 2KK5 1 JRNL REVDAT 1 21-JUL-09 2KK5 0 JRNL AUTH A.PATRA,C.RICHERT JRNL TITL HIGH FIDELITY BASE PAIRING AT THE 3'-TERMINUS. JRNL REF J.AM.CHEM.SOC. V. 131 12671 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19722718 JRNL DOI 10.1021/JA9033654 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KK5 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB101220. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM ANTHRAQUINON CAPPED DNA REMARK 210 DUPLEX, 100% D2O, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H REMARK 210 TOCSY; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 3 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-3 REMARK 470 RES CSSEQI ATOMS REMARK 470 2AU A 6 N2' REMARK 470 2AU B 6 N2' REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AQC A 7 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AQC B 7 DBREF 2KK5 A 1 6 PDB 2KK5 2KK5 1 6 DBREF 2KK5 B 1 6 PDB 2KK5 2KK5 1 6 SEQRES 1 A 6 DA DC DG DC DG 2AU SEQRES 1 B 6 DA DC DG DC DG 2AU MODRES 2KK5 2AU A 6 U 2'-AMINOURIDINE MODRES 2KK5 2AU B 6 U 2'-AMINOURIDINE HET 2AU A 6 29 HET 2AU B 6 29 HET AQC A 7 27 HET AQC B 7 27 HETNAM 2AU 2'-AMINOURIDINE HETNAM AQC 9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-CARBOXAMIDE FORMUL 1 2AU 2(C9 H14 N3 O8 P) FORMUL 3 AQC 2(C15 H9 N O3) LINK O3' DG A 5 P 2AU A 6 1555 1555 1.61 LINK O3' DG B 5 P 2AU B 6 1555 1555 1.61 LINK C2' 2AU A 6 N2' AQC A 7 1555 1555 1.46 LINK C2' 2AU B 6 N2' AQC B 7 1555 1555 1.45 SITE 1 AC1 4 DG A 5 2AU A 6 DA B 1 DC B 2 SITE 1 AC2 4 DA A 1 DC A 2 DG B 5 2AU B 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL MASTER 65 0 4 0 0 0 2 6 0 0 0 2 END