HEADER ANTIMICROBIAL PROTEIN 03-APR-09 2KHF TITLE PLANTARICIN J IN DPC-MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLNJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BACTERIOCIN PLNJ, BACTERIOCIN PEPTIDE PLNJ; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 GENE: PLNJ, LP_0406; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEV2 KEYWDS ANTI-MICROBIAL, BACTERIOCIN, TWO-PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROGNE,C.HAUGEN,P.E.KRISTIANSEN,J.NISSEN-MEYER REVDAT 2 26-FEB-20 2KHF 1 REMARK REVDAT 1 30-JUN-09 2KHF 0 JRNL AUTH P.ROGNE,C.HAUGEN,G.FIMLAND,J.NISSEN-MEYER,P.E.KRISTIANSEN JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE TWO-PEPTIDE BACTERIOCIN JRNL TITL 2 PLANTARICIN JK. JRNL REF PEPTIDES 2009 JRNL REFN ISSN 0196-9781 JRNL PMID 19538999 JRNL DOI 10.1016/J.PEPTIDES.2009.06.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CYANA 2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101124. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 2.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-95% 15N] PLNJ-1, 100 REMARK 210 MM [U-99% 2H] DPC-2, 0.2 MM DSS- REMARK 210 3, 10 % [U-2H] D2O-4, 0.1 % TFA- REMARK 210 5, 90% H2O/10% D2O; 1 MM PLNJ-6, REMARK 210 170 MM [U-99% 2H] DPC-7, 0.1 % REMARK 210 TFA-8, 0.2 MM DSS-9, 10 % [U-2H] REMARK 210 D2O-10, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H COSY; 2D DQF-COSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY; 3D REMARK 210 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, SPARKY, NMRPIPE, REMARK 210 ACME, CYANA 2.1, MOLMOL 2K2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -34.82 -178.34 REMARK 500 2 ALA A 2 -35.42 -177.52 REMARK 500 4 ALA A 2 -35.02 -178.25 REMARK 500 9 ALA A 2 -35.21 -178.02 REMARK 500 10 ALA A 2 -35.18 -178.23 REMARK 500 12 ALA A 2 -35.04 -178.26 REMARK 500 13 ALA A 2 -36.22 -175.58 REMARK 500 14 ALA A 2 -34.74 -178.39 REMARK 500 15 ALA A 2 -34.91 -178.33 REMARK 500 16 ALA A 2 -35.50 -177.44 REMARK 500 17 ALA A 2 -42.13 -173.65 REMARK 500 18 ALA A 2 -35.01 -178.30 REMARK 500 20 ALA A 2 -40.23 -171.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16239 RELATED DB: BMRB DBREF 2KHF A 1 25 UNP P71461 P71461_LACPL 31 55 SEQRES 1 A 25 GLY ALA TRP LYS ASN PHE TRP SER SER LEU ARG LYS GLY SEQRES 2 A 25 PHE TYR ASP GLY GLU ALA GLY ARG ALA ILE ARG ARG HELIX 1 1 ALA A 2 TYR A 15 1 14 HELIX 2 2 GLY A 17 ALA A 22 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 108 0 0 2 0 0 0 6 0 0 0 2 END