HEADER RNA 13-MAR-09 2KGP TITLE STRUCTURAL BASIS FOR STABILIZATION OF THE TAU PRE-MRNA SPLICING TITLE 2 REGULATORY ELEMENT BY NOVANTRONE (MITOXANTRONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (25-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: 1 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC RNA KEYWDS TAU PRE-MRNA, SPLICING REGULATORY ELEMENT, MITOXANTRONE, NOVANTRONE, KEYWDS 2 RNA-SMALL MOLECULE, TAUOPATHIES, RNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.ZHENG,Y.CHEN,C.P.DONAHUE,M.S.WOLFE,G.VARANI REVDAT 3 07-DEC-11 2KGP 1 JRNL VERSN REVDAT 2 09-JUN-09 2KGP 1 JRNL REVDAT 1 02-JUN-09 2KGP 0 JRNL AUTH S.ZHENG,Y.CHEN,C.P.DONAHUE,M.S.WOLFE,G.VARANI JRNL TITL STRUCTURAL BASIS FOR STABILIZATION OF THE TAU PRE-MRNA JRNL TITL 2 SPLICING REGULATORY ELEMENT BY NOVANTRONE (MITOXANTRONE). JRNL REF CHEM.BIOL. V. 16 557 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19477420 JRNL DOI 10.1016/J.CHEMBIOL.2009.03.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB101098. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8~1.8 MM TAU PRE-MRNA SPLICING REMARK 210 REGULATORY ELEMENT-1, 95% H2O/5% REMARK 210 D2O; 0.8~1.8 MM TAU PRE-MRNA REMARK 210 SPLICING REGULATORY ELEMENT-2, REMARK 210 100% D2O; 0.8 MM [U-99% 13C; U- REMARK 210 99% 15N] TAU PRE-MRNA SPLICING REMARK 210 REGULATORY ELEMENT-3, 100% D2O; REMARK 210 0.8~1.2 MM PARTIAL DEUTERATED REMARK 210 NUCLEOTIDES TAU PRE-MRNA SPLICING REMARK 210 REGULATORY ELEMENT-4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 800 MHZ; 750 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C A 3 H8 A A 4 1.43 REMARK 500 HO2' C A 18 O4' A A 19 1.45 REMARK 500 HO2' G A 11 O5' U A 12 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MIX A 26 DBREF 2KGP A 1 25 PDB 2KGP 2KGP 1 25 SEQRES 1 A 25 G G C A G U G U G A G U A SEQRES 2 A 25 C C U U C A C A C G U C HET MIX A 26 60 HETNAM MIX 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL) HETNAM 2 MIX AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE HETSYN MIX MITOXANTRONE, 1,4-DIHYDROXY-5,8-BIS({2-[(2- HETSYN 2 MIX HYDROXYETHYL)AMINO]ETHYL}AMINO)ANTHRA-9,10-QUINONE FORMUL 2 MIX C22 H28 N4 O6 SITE 1 AC1 6 C A 3 A A 4 G A 5 C A 22 SITE 2 AC1 6 G A 23 U A 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 91 0 1 0 0 0 2 6 0 0 0 2 END