HEADER TRANSCRIPTION REPRESSOR 30-JAN-09 2KEL TITLE STRUCTURE OF THE TRANSCRIPTION REGULATOR SVTR FROM THE TITLE 2 HYPERTHERMOPHILIC ARCHAEAL VIRUS SIRV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN 56B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVTR PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS ROD-SHAPED VIRUS 1; SOURCE 3 ORGANISM_COMMON: SIRV-1; SOURCE 4 ORGANISM_TAXID: 157898; SOURCE 5 GENE: 56B, GP08; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30A KEYWDS PROTEIN, HOMODIMER, RIBBON-HELIX-HELIX, TRANSCRIPTION REPRESSOR EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.GUILLIERE,A.KESSLER,N.PEIXEIRO,G.SEZONOV,D.PRANGISHVILI, AUTHOR 2 M.DELEPIERRE,J.I.GUIJARRO REVDAT 2 11-AUG-10 2KEL 1 JRNL REVDAT 1 16-JUN-09 2KEL 0 JRNL AUTH F.GUILLIERE,N.PEIXEIRO,A.KESSLER,B.RAYNAL,N.DESNOUES, JRNL AUTH 2 J.KELLER,M.DELEPIERRE,D.PRANGISHVILI,G.SEZONOV,J.I.GUIJARRO JRNL TITL STRUCTURE, FUNCTION, AND TARGETS OF THE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR SVTR FROM THE HYPERTHERMOPHILIC ARCHAEAL VIRUS JRNL TITL 3 SIRV1. JRNL REF J.BIOL.CHEM. V. 284 22222 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19535331 JRNL DOI 10.1074/JBC.M109.029850 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1-12 ARE DISORDERED. ONLY REMARK 3 COORDINATES FOR RESIDUES 11-56 ARE INCLUDED. STRUCTURES WERE REMARK 3 CALCULATED WITH RESTRAINTS FOR RESIDUES 11-56. REMARK 4 REMARK 4 2KEL COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE RCSB ID CODE IS RCSB101024. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 0.0004; 0.0004 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.6 MM SVTR, 20 MM [U-2H] SODIUM REMARK 210 ACETATE, 90% H2O/10% D2O; 1.2 MM REMARK 210 SVTR, 20 MM [U-2H] SODIUM REMARK 210 ACETATE, 100% D2O; 1.5 MM [U-98% REMARK 210 13C; U-98% 15N] SVTR, 20 MM [U- REMARK 210 2H] SODIUM ACETATE, 88% H2O/12% REMARK 210 D2O; 2.9 MM 50%[U-98% 13C; U-98% REMARK 210 15N]; 50% NATURAL ABUNDANCE SVTR, REMARK 210 20 MM [U-2H] SODIUM ACETATE, 88% REMARK 210 H2O/12% D2O; 1.7 MM [U-98% 15N] REMARK 210 SVTR, 20 MM [U-2H] SODIUM REMARK 210 ACETATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-13C NOESY; REMARK 210 3D DOUBLY-FILTERED 1H-13C NOESY; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2, CNS 1.1, VNMRJ 2.1B, REMARK 210 NMRPIPE, NMRVIEW 5.2.2, REMARK 210 PROCHECKNMR 3.4, WHATIF REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 GLN B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 LYS A 48 HE22 GLN A 52 1.25 REMARK 500 HE2 LYS B 48 HE22 GLN B 52 1.25 REMARK 500 HD13 LEU A 28 HG CYS A 32 1.44 REMARK 500 HD13 LEU B 28 HG CYS B 32 1.44 REMARK 500 HB1 ALA A 46 HA ILE B 47 1.48 REMARK 500 HA ILE A 47 HB1 ALA B 46 1.48 REMARK 500 HG LEU A 28 HD11 ILE B 47 1.54 REMARK 500 HD11 ILE A 47 HG LEU B 28 1.54 REMARK 500 HZ2 LYS A 53 OE1 GLU B 49 1.55 REMARK 500 OE1 GLU A 49 HZ2 LYS B 53 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 54 -72.81 -106.80 REMARK 500 1 ASN A 55 -61.35 178.90 REMARK 500 1 ARG B 54 -73.45 -106.52 REMARK 500 1 ASN B 55 -61.40 179.34 REMARK 500 2 ARG A 54 -70.57 -100.31 REMARK 500 2 ASN A 55 -58.26 179.12 REMARK 500 2 ARG B 54 -70.71 -100.23 REMARK 500 2 ASN B 55 -58.15 179.44 REMARK 500 3 ARG A 54 -71.88 -108.22 REMARK 500 3 ASN A 55 -62.21 178.23 REMARK 500 3 ARG B 54 -72.34 -108.01 REMARK 500 3 ASN B 55 -61.84 178.48 REMARK 500 4 ARG A 54 -69.84 -104.14 REMARK 500 4 ASN A 55 -66.12 -174.17 REMARK 500 4 ARG B 54 -69.94 -103.19 REMARK 500 4 ASN B 55 -65.65 -174.32 REMARK 500 5 ARG A 54 -65.52 -100.88 REMARK 500 5 ASN A 55 -66.06 -174.11 REMARK 500 5 ARG B 54 -65.88 -100.44 REMARK 500 5 ASN B 55 -66.61 -173.94 REMARK 500 6 GLN A 12 -50.24 71.09 REMARK 500 6 ARG A 54 -75.57 -110.39 REMARK 500 6 ASN A 55 -58.76 176.74 REMARK 500 6 GLN B 12 -50.15 71.12 REMARK 500 6 ARG B 54 -74.99 -110.40 REMARK 500 6 ASN B 55 -59.35 176.55 REMARK 500 7 ARG A 54 -75.64 -104.59 REMARK 500 7 ASN A 55 -54.71 177.57 REMARK 500 7 ARG B 54 -75.42 -105.12 REMARK 500 7 ASN B 55 -54.99 177.36 REMARK 500 8 ARG A 54 -72.33 -99.50 REMARK 500 8 ASN A 55 -61.36 -173.90 REMARK 500 8 ARG B 54 -72.20 -99.35 REMARK 500 8 ASN B 55 -61.36 -173.95 REMARK 500 9 ARG A 54 -75.30 -106.11 REMARK 500 9 ASN A 55 -60.13 -175.29 REMARK 500 9 ARG B 54 -74.92 -106.06 REMARK 500 9 ASN B 55 -60.47 -175.42 REMARK 500 10 GLN A 12 -76.71 69.40 REMARK 500 10 ARG A 54 -71.00 -108.85 REMARK 500 10 ASN A 55 -62.09 -179.26 REMARK 500 10 GLN B 12 -76.65 70.08 REMARK 500 10 ARG B 54 -71.22 -108.71 REMARK 500 10 ASN B 55 -61.93 -179.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 2KEL A 1 56 UNP Q8QL46 Y56B_SIRV1 1 56 DBREF 2KEL B 1 56 UNP Q8QL46 Y56B_SIRV1 1 56 SEQRES 1 A 56 MET GLN THR GLN GLU GLN SER GLN LYS LYS LYS GLN LYS SEQRES 2 A 56 ALA VAL PHE GLY ILE TYR MET ASP LYS ASP LEU LYS THR SEQRES 3 A 56 ARG LEU LYS VAL TYR CYS ALA LYS ASN ASN LEU GLN LEU SEQRES 4 A 56 THR GLN ALA ILE GLU GLU ALA ILE LYS GLU TYR LEU GLN SEQRES 5 A 56 LYS ARG ASN GLY SEQRES 1 B 56 MET GLN THR GLN GLU GLN SER GLN LYS LYS LYS GLN LYS SEQRES 2 B 56 ALA VAL PHE GLY ILE TYR MET ASP LYS ASP LEU LYS THR SEQRES 3 B 56 ARG LEU LYS VAL TYR CYS ALA LYS ASN ASN LEU GLN LEU SEQRES 4 B 56 THR GLN ALA ILE GLU GLU ALA ILE LYS GLU TYR LEU GLN SEQRES 5 B 56 LYS ARG ASN GLY HELIX 1 1 LYS A 22 ASN A 35 1 14 HELIX 2 2 GLN A 38 ASN A 55 1 18 HELIX 3 3 LYS B 22 ASN B 35 1 14 HELIX 4 4 GLN B 38 ASN B 55 1 18 SHEET 1 A 2 LYS A 13 ASP A 21 0 SHEET 2 A 2 LYS B 13 ASP B 21 -1 O MET B 20 N ALA A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 168 0 0 4 2 0 0 6 0 0 0 10 END