HEADER PROTEIN BINDING 06-JAN-09 2KDF TITLE NMR STRUCTURE OF MINOR S5A (196-306):K48 LINKED DIUBIQUITIN TITLE 2 SPECIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 196-306, S5A FRAGMENT; COMPND 9 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT S5A, RPN10, COMPND 10 MULTIUBIQUITIN CHAIN-BINDING PROTEIN, ANTISECRETORY FACTOR COMPND 11 1, ASF, AF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PSMD4, MCB1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET26B KEYWDS PROTEIN COMPLEX, UBIQUITIN INTERACTING MOTIFS, CYTOPLASM, KEYWDS 2 NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ALTERNATIVE KEYWDS 3 SPLICING, PROTEASOME, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 7 AUTHOR N.ZHANG,Q.WANG,A.EHLINGER,L.RANDLES,J.W.LARY,Y.KANG, AUTHOR 2 A.HARIRINIA,J.L.COLE,D.FUSHMAN,K.J.WALTERS REVDAT 1 01-SEP-09 2KDF 0 JRNL AUTH N.ZHANG,Q.WANG,A.EHLINGER,L.RANDLES,J.W.LARY, JRNL AUTH 2 Y.KANG,A.HARIRINIA,A.J.STORASKA,J.L.COLE,D.FUSHMAN, JRNL AUTH 3 K.J.WALTERS JRNL TITL STRUCTURE OF THE S5A:K48-LINKED DIUBIQUITIN COMPLEX JRNL TITL 2 AND ITS INTERACTIONS WITH RPN13. JRNL REF MOL.CELL V. 35 280 2009 JRNL REFN ISSN 1097-2765 JRNL PMID 19683493 JRNL DOI 10.1016/J.MOLCEL.2009.06.010 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KDF COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-09. REMARK 100 THE RCSB ID CODE IS RCSB100982. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 20 MM NAPO4; 100 MM NACL; 20 REMARK 210 MM NAPO4; 50 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 15N; U-50% 2H] REMARK 210 S5A (196-306)-1, 1.2 MM K48 REMARK 210 LINKED DIUBIQUITIN-2, 90% H2O/ REMARK 210 10% D2O; 0.5 MM [U-100% 13C] REMARK 210 S5A (196-306)-3, 1.5 MM K48 REMARK 210 LINKED DIUBIQUITIN-4, 100% REMARK 210 D2O; 0.5 MM [U-100% 13C OF THE REMARK 210 PROXIMAL UB; NATURAL ABUNDANCE REMARK 210 OF THE DISTAL SUBUNIT] K48 REMARK 210 LINKED DIUBIQUITIN-5, 1.0 MM REMARK 210 S5A (196-306)-6, 100% D2O; 0.5 REMARK 210 MM [U-100% 13C OF THE DISTAL REMARK 210 SUBUNIT; NATURAL ABUNDANCE OF REMARK 210 THE PROXIMAL UB] K48 LINKED REMARK 210 DIUBIQUITIN-7, 1.0 MM S5A REMARK 210 (196-306)-8, 100% D2O; 0.4 MM REMARK 210 [U-100% 13C] S5A (196-306)-9, REMARK 210 1.2 MM [U-100% 2H OF THE REMARK 210 PROXIMAL UB; NATURAL ABUNDANCE REMARK 210 OF THE DISTAL SUBUNIT] K48 REMARK 210 LINKED DIUBIQUITIN-10, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 13C-FILTERED 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 7 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 205 35.00 -159.08 REMARK 500 1 PHE A 206 -41.94 -166.93 REMARK 500 1 VAL A 208 -59.83 -127.10 REMARK 500 1 ASP A 213 118.44 -171.12 REMARK 500 1 ASP A 255 46.18 -154.33 REMARK 500 1 PHE A 270 55.54 -118.02 REMARK 500 1 THR A 273 80.04 -154.40 REMARK 500 1 LEU A 275 147.64 -171.48 REMARK 500 1 THR A 282 -159.86 -74.75 REMARK 500 1 GLN A 296 44.30 -107.88 REMARK 500 1 PHE A 300 -60.46 -123.82 REMARK 500 1 GLN A 302 38.99 -97.60 REMARK 500 1 ALA A 303 31.21 -142.02 REMARK 500 1 THR B 7 -164.79 -106.21 REMARK 500 1 LEU B 8 31.94 -98.02 REMARK 500 1 VAL B 17 -165.10 -127.43 REMARK 500 1 THR B 55 -168.64 -108.54 REMARK 500 1 THR C 83 -163.65 -128.30 REMARK 500 1 THR C 85 27.89 -145.48 REMARK 500 1 THR C 131 -169.13 -108.27 REMARK 500 2 GLU A 205 31.40 -141.13 REMARK 500 2 PHE A 206 -46.34 -154.31 REMARK 500 2 ASP A 213 118.99 -170.47 REMARK 500 2 ILE A 248 53.29 -110.25 REMARK 500 2 THR A 251 -53.40 -123.66 REMARK 500 2 GLU A 254 66.07 -116.96 REMARK 500 2 LEU A 275 149.89 -172.03 REMARK 500 2 ALA A 298 106.35 -165.21 REMARK 500 2 GLU A 299 85.55 52.80 REMARK 500 2 GLN A 302 39.83 -148.93 REMARK 500 2 GLU A 304 -46.90 -159.74 REMARK 500 2 THR B 7 -165.07 -119.66 REMARK 500 2 THR B 9 27.73 -140.81 REMARK 500 2 VAL B 17 -163.17 -122.27 REMARK 500 2 THR B 55 -169.06 -108.93 REMARK 500 2 GLN B 62 -168.84 -117.94 REMARK 500 2 THR C 83 -164.50 -121.94 REMARK 500 2 VAL C 93 -163.41 -106.89 REMARK 500 3 PHE A 204 95.74 53.61 REMARK 500 3 PHE A 206 -49.33 -148.76 REMARK 500 3 VAL A 208 -56.03 -135.18 REMARK 500 3 ASP A 213 117.15 -166.03 REMARK 500 3 ILE A 248 71.11 -100.45 REMARK 500 3 ALA A 249 -166.28 -162.21 REMARK 500 3 SER A 256 33.79 -96.27 REMARK 500 3 THR A 273 28.57 -153.73 REMARK 500 3 LEU A 275 148.07 -171.70 REMARK 500 3 THR A 282 -161.08 -72.71 REMARK 500 3 ALA A 298 -77.00 -165.13 REMARK 500 3 GLU A 299 51.73 -118.63 REMARK 500 3 ALA A 303 35.62 -140.56 REMARK 500 3 THR B 7 -167.02 -100.99 REMARK 500 3 LEU B 8 31.65 -98.05 REMARK 500 3 THR C 83 -166.09 -105.28 REMARK 500 3 VAL C 93 -163.88 -120.56 REMARK 500 3 ARG C 150 48.20 -96.22 REMARK 500 4 LEU A 199 -51.04 -148.87 REMARK 500 4 PHE A 204 86.53 52.68 REMARK 500 4 PHE A 206 -46.47 -148.83 REMARK 500 4 VAL A 208 -65.85 -131.95 REMARK 500 4 ASP A 213 119.31 -172.72 REMARK 500 4 ALA A 249 -165.79 53.69 REMARK 500 4 LEU A 275 148.27 -171.63 REMARK 500 4 THR A 282 -159.08 -74.48 REMARK 500 4 ALA A 298 49.02 -108.22 REMARK 500 4 GLU A 299 78.91 -112.09 REMARK 500 4 SER A 305 -159.09 -89.87 REMARK 500 4 THR B 7 -169.95 -111.43 REMARK 500 4 VAL B 17 -162.89 -117.23 REMARK 500 4 GLN B 62 -167.70 -118.82 REMARK 500 4 THR C 83 -164.80 -119.84 REMARK 500 4 VAL C 93 -162.08 -105.24 REMARK 500 4 THR C 131 -168.36 -108.69 REMARK 500 5 LEU A 199 90.73 53.08 REMARK 500 5 VAL A 208 -68.36 -126.67 REMARK 500 5 ASP A 213 118.45 -171.14 REMARK 500 5 GLU A 245 -44.04 -159.18 REMARK 500 5 THR A 251 -46.55 -149.94 REMARK 500 5 GLU A 254 48.90 -103.02 REMARK 500 5 SER A 256 38.56 -142.07 REMARK 500 5 THR A 273 41.89 -154.04 REMARK 500 5 LEU A 275 148.38 -171.64 REMARK 500 5 THR A 282 -162.75 -74.92 REMARK 500 5 GLU A 299 82.79 -158.71 REMARK 500 5 GLN A 302 85.88 52.98 REMARK 500 5 ALA A 303 -57.56 -163.90 REMARK 500 5 THR B 7 -166.13 -122.68 REMARK 500 5 VAL B 17 -162.41 -110.48 REMARK 500 5 THR B 55 -169.07 -107.54 REMARK 500 5 GLN B 62 -168.63 -108.79 REMARK 500 5 THR C 83 -167.68 -100.90 REMARK 500 5 LEU C 84 35.02 -97.39 REMARK 500 5 THR C 85 28.11 -143.90 REMARK 500 5 GLN C 138 -165.65 -100.88 REMARK 500 5 ARG C 150 93.25 -168.51 REMARK 500 6 SER A 202 -42.12 -165.95 REMARK 500 6 PHE A 204 79.98 -103.45 REMARK 500 6 PHE A 206 28.18 -143.15 REMARK 500 6 VAL A 208 -54.92 -120.27 REMARK 500 6 ASP A 213 117.73 -171.18 REMARK 500 6 THR A 253 48.05 -148.65 REMARK 500 6 ASP A 255 -51.56 -124.26 REMARK 500 6 THR A 273 36.68 -154.00 REMARK 500 6 LEU A 275 147.60 -170.79 REMARK 500 6 THR A 282 -161.31 -74.02 REMARK 500 6 GLN A 296 46.17 -99.17 REMARK 500 6 ALA A 298 101.70 -165.57 REMARK 500 6 GLU A 299 46.29 -96.33 REMARK 500 6 THR B 7 -164.24 -120.77 REMARK 500 6 VAL B 17 -161.78 -111.19 REMARK 500 6 THR B 55 -169.32 -108.58 REMARK 500 6 GLN B 62 -167.67 -119.33 REMARK 500 6 ARG B 74 79.40 -151.25 REMARK 500 6 VAL C 93 -161.89 -113.58 REMARK 500 6 THR C 131 -168.98 -110.31 REMARK 500 7 PHE A 204 72.45 -153.58 REMARK 500 7 PHE A 206 -44.20 -153.68 REMARK 500 7 VAL A 208 -54.11 -127.01 REMARK 500 7 ASP A 213 116.34 -170.66 REMARK 500 7 ALA A 249 95.55 52.53 REMARK 500 7 THR A 250 -75.94 -129.31 REMARK 500 7 PHE A 270 50.03 -117.36 REMARK 500 7 THR A 273 31.21 -153.84 REMARK 500 7 LEU A 275 147.45 -171.01 REMARK 500 7 GLN A 296 -60.51 -125.60 REMARK 500 7 SER A 305 -59.87 -149.32 REMARK 500 7 THR B 7 -169.55 -115.83 REMARK 500 7 VAL B 17 -162.46 -121.47 REMARK 500 7 THR C 83 -165.35 -109.62 REMARK 500 7 LEU C 84 30.91 -97.66 REMARK 500 7 VAL C 93 -162.53 -120.99 REMARK 500 7 THR C 131 -169.34 -106.51 REMARK 500 7 GLN C 138 -169.55 -109.38 REMARK 500 7 LEU C 149 -169.20 -115.44 REMARK 500 7 ARG C 150 -168.03 -126.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 221 0.32 SIDE_CHAIN REMARK 500 1 ARG A 228 0.23 SIDE_CHAIN REMARK 500 1 ARG A 230 0.28 SIDE_CHAIN REMARK 500 1 ARG A 236 0.30 SIDE_CHAIN REMARK 500 1 ARG A 237 0.31 SIDE_CHAIN REMARK 500 1 ARG A 272 0.21 SIDE_CHAIN REMARK 500 1 ARG B 42 0.29 SIDE_CHAIN REMARK 500 1 ARG B 54 0.32 SIDE_CHAIN REMARK 500 1 ARG B 72 0.32 SIDE_CHAIN REMARK 500 1 ARG B 74 0.31 SIDE_CHAIN REMARK 500 1 ARG C 118 0.28 SIDE_CHAIN REMARK 500 1 ARG C 130 0.32 SIDE_CHAIN REMARK 500 1 ARG C 148 0.24 SIDE_CHAIN REMARK 500 1 ARG C 150 0.32 SIDE_CHAIN REMARK 500 2 ARG A 221 0.25 SIDE_CHAIN REMARK 500 2 ARG A 228 0.26 SIDE_CHAIN REMARK 500 2 ARG A 230 0.23 SIDE_CHAIN REMARK 500 2 ARG A 236 0.23 SIDE_CHAIN REMARK 500 2 ARG A 237 0.30 SIDE_CHAIN REMARK 500 2 ARG A 272 0.31 SIDE_CHAIN REMARK 500 2 ARG B 42 0.31 SIDE_CHAIN REMARK 500 2 ARG B 54 0.28 SIDE_CHAIN REMARK 500 2 ARG B 72 0.32 SIDE_CHAIN REMARK 500 2 ARG B 74 0.23 SIDE_CHAIN REMARK 500 2 ARG C 118 0.21 SIDE_CHAIN REMARK 500 2 ARG C 130 0.26 SIDE_CHAIN REMARK 500 2 ARG C 148 0.23 SIDE_CHAIN REMARK 500 2 ARG C 150 0.22 SIDE_CHAIN REMARK 500 3 ARG A 221 0.32 SIDE_CHAIN REMARK 500 3 ARG A 228 0.25 SIDE_CHAIN REMARK 500 3 ARG A 230 0.32 SIDE_CHAIN REMARK 500 3 ARG A 236 0.28 SIDE_CHAIN REMARK 500 3 ARG A 237 0.23 SIDE_CHAIN REMARK 500 3 ARG A 272 0.32 SIDE_CHAIN REMARK 500 3 ARG B 42 0.22 SIDE_CHAIN REMARK 500 3 ARG B 54 0.29 SIDE_CHAIN REMARK 500 3 ARG B 72 0.29 SIDE_CHAIN REMARK 500 3 ARG B 74 0.31 SIDE_CHAIN REMARK 500 3 ARG C 118 0.32 SIDE_CHAIN REMARK 500 3 ARG C 130 0.31 SIDE_CHAIN REMARK 500 3 ARG C 148 0.32 SIDE_CHAIN REMARK 500 3 ARG C 150 0.30 SIDE_CHAIN REMARK 500 4 ARG A 221 0.27 SIDE_CHAIN REMARK 500 4 ARG A 228 0.27 SIDE_CHAIN REMARK 500 4 ARG A 230 0.32 SIDE_CHAIN REMARK 500 4 ARG A 236 0.22 SIDE_CHAIN REMARK 500 4 ARG A 237 0.28 SIDE_CHAIN REMARK 500 4 ARG A 272 0.31 SIDE_CHAIN REMARK 500 4 ARG B 42 0.27 SIDE_CHAIN REMARK 500 4 ARG B 54 0.21 SIDE_CHAIN REMARK 500 4 ARG B 72 0.24 SIDE_CHAIN REMARK 500 4 ARG B 74 0.32 SIDE_CHAIN REMARK 500 4 ARG C 118 0.27 SIDE_CHAIN REMARK 500 4 ARG C 130 0.29 SIDE_CHAIN REMARK 500 4 ARG C 148 0.23 SIDE_CHAIN REMARK 500 4 ARG C 150 0.23 SIDE_CHAIN REMARK 500 5 ARG A 221 0.28 SIDE_CHAIN REMARK 500 5 ARG A 228 0.30 SIDE_CHAIN REMARK 500 5 ARG A 230 0.29 SIDE_CHAIN REMARK 500 5 ARG A 236 0.29 SIDE_CHAIN REMARK 500 5 ARG A 237 0.27 SIDE_CHAIN REMARK 500 5 ARG A 272 0.28 SIDE_CHAIN REMARK 500 5 ARG B 42 0.32 SIDE_CHAIN REMARK 500 5 ARG B 54 0.23 SIDE_CHAIN REMARK 500 5 ARG B 72 0.28 SIDE_CHAIN REMARK 500 5 ARG B 74 0.26 SIDE_CHAIN REMARK 500 5 ARG C 118 0.31 SIDE_CHAIN REMARK 500 5 ARG C 130 0.29 SIDE_CHAIN REMARK 500 5 ARG C 148 0.24 SIDE_CHAIN REMARK 500 5 ARG C 150 0.29 SIDE_CHAIN REMARK 500 6 ARG A 221 0.26 SIDE_CHAIN REMARK 500 6 ARG A 228 0.30 SIDE_CHAIN REMARK 500 6 ARG A 230 0.28 SIDE_CHAIN REMARK 500 6 ARG A 236 0.22 SIDE_CHAIN REMARK 500 6 ARG A 237 0.32 SIDE_CHAIN REMARK 500 6 ARG A 272 0.32 SIDE_CHAIN REMARK 500 6 ARG B 42 0.29 SIDE_CHAIN REMARK 500 6 ARG B 54 0.23 SIDE_CHAIN REMARK 500 6 ARG B 72 0.31 SIDE_CHAIN REMARK 500 6 ARG B 74 0.23 SIDE_CHAIN REMARK 500 6 ARG C 118 0.23 SIDE_CHAIN REMARK 500 6 ARG C 130 0.30 SIDE_CHAIN REMARK 500 6 ARG C 148 0.23 SIDE_CHAIN REMARK 500 6 ARG C 150 0.32 SIDE_CHAIN REMARK 500 7 ARG A 221 0.32 SIDE_CHAIN REMARK 500 7 ARG A 228 0.31 SIDE_CHAIN REMARK 500 7 ARG A 230 0.26 SIDE_CHAIN REMARK 500 7 ARG A 236 0.27 SIDE_CHAIN REMARK 500 7 ARG A 237 0.28 SIDE_CHAIN REMARK 500 7 ARG A 272 0.27 SIDE_CHAIN REMARK 500 7 ARG B 42 0.32 SIDE_CHAIN REMARK 500 7 ARG B 54 0.28 SIDE_CHAIN REMARK 500 7 ARG B 72 0.31 SIDE_CHAIN REMARK 500 7 ARG B 74 0.28 SIDE_CHAIN REMARK 500 7 ARG C 118 0.24 SIDE_CHAIN REMARK 500 7 ARG C 130 0.25 SIDE_CHAIN REMARK 500 7 ARG C 148 0.22 SIDE_CHAIN REMARK 500 7 ARG C 150 0.23 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YX4 RELATED DB: PDB REMARK 900 STRUCTURE OF S5A BOUND TO MONOUBIQUITIN PROVIDES A MODEL REMARK 900 FOR POLYUBIQUITIN RECOGNITION REMARK 900 RELATED ID: 1YX5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF S5A UIM-1/UBIQUITIN COMPLEX REMARK 900 RELATED ID: 1YX6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF S5A UIM-2/UBIQUITIN COMPLEX REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 UBIQUITIN NMR STRUCTURE REMARK 900 RELATED ID: 2KDE RELATED DB: PDB DBREF 2KDF B 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 2KDF C 77 152 UNP P62988 UBIQ_HUMAN 1 76 DBREF 2KDF A 196 306 UNP P55036 PSMD4_HUMAN 196 306 SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 A 111 MET LEU GLY LEU GLY ALA SER ASP PHE GLU PHE GLY VAL SEQRES 2 A 111 ASP PRO SER ALA ASP PRO GLU LEU ALA LEU ALA LEU ARG SEQRES 3 A 111 VAL SER MET GLU GLU GLN ARG GLN ARG GLN GLU GLU GLU SEQRES 4 A 111 ALA ARG ARG ALA ALA ALA ALA SER ALA ALA GLU ALA GLY SEQRES 5 A 111 ILE ALA THR THR GLY THR GLU ASP SER ASP ASP ALA LEU SEQRES 6 A 111 LEU LYS MET THR ILE SER GLN GLN GLU PHE GLY ARG THR SEQRES 7 A 111 GLY LEU PRO ASP LEU SER SER MET THR GLU GLU GLU GLN SEQRES 8 A 111 ILE ALA TYR ALA MET GLN MET SER LEU GLN GLY ALA GLU SEQRES 9 A 111 PHE GLY GLN ALA GLU SER ALA HELIX 1 1 ASP A 209 ALA A 212 5 4 HELIX 2 2 ASP A 213 GLY A 247 1 35 HELIX 3 3 SER A 256 PHE A 270 1 15 HELIX 4 4 THR A 282 GLN A 296 1 15 HELIX 5 5 THR B 22 GLU B 34 1 13 HELIX 6 6 LEU B 56 ASN B 60 5 5 HELIX 7 7 THR C 98 GLU C 110 1 13 HELIX 8 8 PRO C 113 GLN C 117 5 5 HELIX 9 9 LEU C 132 ASN C 136 5 5 SHEET 1 A 4 THR B 12 GLU B 16 0 SHEET 2 A 4 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 A 4 THR B 66 LEU B 71 1 O LEU B 69 N LYS B 6 SHEET 4 A 4 GLN B 41 ILE B 44 -1 N ILE B 44 O HIS B 68 SHEET 1 B 4 THR C 88 GLU C 92 0 SHEET 2 B 4 GLN C 78 LYS C 82 -1 N ILE C 79 O LEU C 91 SHEET 3 B 4 THR C 142 VAL C 146 1 O LEU C 145 N LYS C 82 SHEET 4 B 4 ARG C 118 ILE C 120 -1 N ILE C 120 O HIS C 144 LINK C GLY B 76 NZ LYS C 124 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 346 0 0 9 8 0 0 6 0 0 0 21 END