HEADER METAL BINDING PROTEIN 06-NOV-08 2KAJ TITLE NMR STRUCTURE OF GALLIUM SUBSTITUTED FERREDOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERREDOXIN I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCCC6803; SOURCE 5 GENE: PETF, FED, SSL0020; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSET5A KEYWDS FERREDOXIN, IRON-SULFUR, ELECTRON TRANSPORT, IRON, METAL BINDING KEYWDS 2 PROTEIN, TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.XU,M.UBBINK,D.B.KNAFF REVDAT 3 19-FEB-20 2KAJ 1 REMARK REVDAT 2 06-APR-11 2KAJ 1 JRNL REMARK LINK REVDAT 1 10-NOV-09 2KAJ 0 JRNL AUTH X.XU,S.SCANU,J.S.CHUNG,M.HIRASAWA,D.B.KNAFF,M.UBBINK JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 GA-SUBSTITUTED FERREDOXIN FROM SYNECHOCYSTIS SP. PCC6803, A JRNL TITL 3 MIMIC OF THE NATIVE PROTEIN. JRNL REF BIOCHEMISTRY V. 49 7790 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20690702 JRNL DOI 10.1021/BI100712G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100881. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 20 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] GAFD, 50 MM REMARK 210 SODIUM PHOSPHATE, 95% H2O/5% D2O; REMARK 210 2 MM GAFD, 50 MM SODIUM REMARK 210 PHOSPHATE, 99%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA, ANSIG REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 36 90.17 -69.80 REMARK 500 1 SER A 38 -58.19 -132.52 REMARK 500 1 ARG A 40 42.40 39.01 REMARK 500 1 ALA A 41 -39.46 -141.31 REMARK 500 1 ALA A 43 40.86 -173.30 REMARK 500 1 THR A 52 37.59 -166.79 REMARK 500 1 ALA A 53 31.82 -157.81 REMARK 500 1 SER A 62 25.57 -147.83 REMARK 500 1 ASP A 65 -66.13 -125.41 REMARK 500 1 ASP A 66 -40.65 -160.91 REMARK 500 1 VAL A 78 46.91 -157.88 REMARK 500 1 PRO A 81 84.67 -69.76 REMARK 500 1 LYS A 91 57.43 -149.02 REMARK 500 2 ASP A 21 41.05 -93.97 REMARK 500 2 ASP A 34 62.06 62.31 REMARK 500 2 PRO A 36 77.00 -69.79 REMARK 500 2 SER A 38 -42.54 -145.79 REMARK 500 2 ARG A 40 41.91 38.83 REMARK 500 2 ALA A 41 -38.99 -150.08 REMARK 500 2 ALA A 43 39.15 -178.71 REMARK 500 2 THR A 52 -39.42 -132.70 REMARK 500 2 SER A 55 138.05 -175.95 REMARK 500 2 GLN A 61 171.79 -52.53 REMARK 500 2 SER A 62 24.69 -159.38 REMARK 500 2 PHE A 63 -61.58 -126.77 REMARK 500 2 LEU A 64 -175.13 -62.23 REMARK 500 2 VAL A 78 49.14 -153.34 REMARK 500 2 PRO A 81 85.72 -69.81 REMARK 500 3 SER A 2 103.80 62.45 REMARK 500 3 ASP A 21 44.61 -107.97 REMARK 500 3 PRO A 36 77.53 -69.75 REMARK 500 3 SER A 38 -41.61 -146.34 REMARK 500 3 ARG A 40 41.38 39.17 REMARK 500 3 ALA A 41 -38.92 -149.24 REMARK 500 3 ALA A 43 39.61 -178.92 REMARK 500 3 THR A 52 -39.81 -131.95 REMARK 500 3 ALA A 53 75.89 -105.02 REMARK 500 3 SER A 62 25.01 -156.05 REMARK 500 3 PHE A 63 -56.29 -123.82 REMARK 500 3 ASP A 65 -74.99 -115.60 REMARK 500 3 ASP A 66 -46.63 -151.21 REMARK 500 3 VAL A 78 48.68 -153.22 REMARK 500 3 PRO A 81 86.59 -69.76 REMARK 500 4 ASP A 21 44.30 -108.01 REMARK 500 4 SER A 38 -41.76 -145.82 REMARK 500 4 ARG A 40 41.66 39.07 REMARK 500 4 ALA A 41 -38.35 -151.12 REMARK 500 4 ALA A 43 36.64 -178.17 REMARK 500 4 THR A 52 -36.32 -133.84 REMARK 500 4 SER A 55 147.42 -171.16 REMARK 500 REMARK 500 THIS ENTRY HAS 150 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GA A 150 GA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 44 SG REMARK 620 2 CYS A 47 SG 91.9 REMARK 620 3 CYS A 77 SG 134.3 94.7 REMARK 620 4 CYS A 39 SG 89.1 137.1 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GA A 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16024 RELATED DB: BMRB DBREF 2KAJ A 1 96 UNP P27320 FER_SYNY3 2 97 SEQRES 1 A 96 ALA SER TYR THR VAL LYS LEU ILE THR PRO ASP GLY GLU SEQRES 2 A 96 SER SER ILE GLU CYS SER ASP ASP THR TYR ILE LEU ASP SEQRES 3 A 96 ALA ALA GLU GLU ALA GLY LEU ASP LEU PRO TYR SER CYS SEQRES 4 A 96 ARG ALA GLY ALA CYS SER THR CYS ALA GLY LYS ILE THR SEQRES 5 A 96 ALA GLY SER VAL ASP GLN SER ASP GLN SER PHE LEU ASP SEQRES 6 A 96 ASP ASP GLN ILE GLU ALA GLY TYR VAL LEU THR CYS VAL SEQRES 7 A 96 ALA TYR PRO THR SER ASP CYS THR ILE GLU THR HIS LYS SEQRES 8 A 96 GLU GLU ASP LEU TYR HET GA A 150 1 HETNAM GA GALLIUM (III) ION FORMUL 2 GA GA 3+ HELIX 1 1 TYR A 23 GLY A 32 1 10 HELIX 2 2 ASP A 66 GLY A 72 1 7 HELIX 3 3 CYS A 77 ALA A 79 5 3 SHEET 1 A 3 GLY A 12 CYS A 18 0 SHEET 2 A 3 TYR A 3 THR A 9 -1 N VAL A 5 O ILE A 16 SHEET 3 A 3 CYS A 85 GLU A 88 1 O CYS A 85 N LYS A 6 SHEET 1 B 2 ALA A 48 LYS A 50 0 SHEET 2 B 2 TYR A 73 LEU A 75 -1 O VAL A 74 N GLY A 49 LINK SG CYS A 44 GA GA A 150 1555 1555 2.42 LINK SG CYS A 47 GA GA A 150 1555 1555 2.42 LINK SG CYS A 77 GA GA A 150 1555 1555 2.43 LINK SG CYS A 39 GA GA A 150 1555 1555 2.43 SITE 1 AC1 4 LEU A 25 SER A 38 GLY A 42 ALA A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 160 0 1 3 5 0 1 6 0 0 0 8 END