HEADER VIRAL PROTEIN 28-AUG-08 2K7Y TITLE SOLUTION FOLD OF HIV-1 VIRUS PROTEIN U CYTOPLASMIC DOMAIN IN TITLE 2 THE PRESENCE OF DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VPU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VPU CYTOPLASMIC DOMAIN; COMPND 5 SYNONYM: VIRAL PROTEIN U, U ORF PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11691; SOURCE 5 STRAIN: HV1S1; SOURCE 6 GENE: VPU; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS PROTEIN, AIDS, APOPTOSIS, HOST-VIRUS INTERACTION, ION KEYWDS 2 TRANSPORT, IONIC CHANNEL, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 3 TRANSMEMBRANE, TRANSPORT, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.WITTLICH,B.W.KOENIG,D.WILLBOLD REVDAT 2 09-FEB-10 2K7Y 1 JRNL REVDAT 1 10-NOV-09 2K7Y 0 JRNL AUTH M.WITTLICH,B.W.KOENIG,M.STOLDT,H.SCHMIDT,D.WILLBOLD JRNL TITL NMR STRUCTURAL CHARACTERIZATION OF HIV-1 VIRUS JRNL TITL 2 PROTEIN U CYTOPLASMIC DOMAIN IN THE PRESENCE OF JRNL TITL 3 DODECYLPHOSPHATIDYLCHOLINE MICELLES JRNL REF FEBS J. V. 276 6560 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19804408 JRNL DOI 10.1111/J.1742-4658.2009.07363.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : RADAR REMARK 3 AUTHORS : HERRMANN, GUNTERT, WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K7Y COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB100789. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 VPUCYT, 100 MM [U-100% 2H] REMARK 210 DPC, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM SODIUM PHOSPHATE, 0.02 REMARK 210 W/V SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D C(CO)NH; 3D HNCACB; REMARK 210 3D HN(CO)CA; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNHA; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4A.5, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 47 H ALA A 50 1.49 REMARK 500 HD1 HIS A 72 O ASP A 80 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 53 -47.65 -138.82 REMARK 500 1 ASN A 55 -29.67 163.60 REMARK 500 1 SER A 57 -40.42 -169.64 REMARK 500 1 GLU A 63 -35.29 -38.74 REMARK 500 1 VAL A 68 -67.96 -92.95 REMARK 500 1 VAL A 78 55.16 39.42 REMARK 500 1 ASP A 80 60.70 -152.17 REMARK 500 2 ILE A 39 -46.25 -132.52 REMARK 500 2 ARG A 49 -29.44 -39.34 REMARK 500 2 ASP A 52 44.19 -86.49 REMARK 500 2 SER A 53 -26.42 159.92 REMARK 500 2 ASN A 55 -30.23 -39.99 REMARK 500 2 GLU A 56 49.83 -82.25 REMARK 500 2 SER A 57 -44.36 -137.04 REMARK 500 2 GLU A 58 23.04 -144.67 REMARK 500 2 ASP A 60 -75.31 65.77 REMARK 500 2 GLN A 61 -35.54 -38.92 REMARK 500 2 GLU A 62 -148.45 -60.11 REMARK 500 2 GLU A 63 -57.49 72.78 REMARK 500 2 GLU A 69 -75.67 -107.82 REMARK 500 2 ARG A 70 -174.13 -61.24 REMARK 500 2 ASP A 77 59.86 -116.78 REMARK 500 2 ASP A 80 68.88 -68.94 REMARK 500 3 SER A 53 -34.29 176.57 REMARK 500 3 GLU A 56 34.83 -87.80 REMARK 500 3 GLU A 58 26.93 -160.23 REMARK 500 3 ASP A 60 -61.07 70.23 REMARK 500 3 GLU A 69 -73.12 -100.50 REMARK 500 3 VAL A 78 36.62 39.27 REMARK 500 3 ASP A 80 63.49 -69.82 REMARK 500 4 SER A 38 -39.14 -179.39 REMARK 500 4 ASP A 52 42.85 -86.15 REMARK 500 4 SER A 53 -28.38 162.94 REMARK 500 4 ASN A 55 -25.44 151.70 REMARK 500 4 GLU A 58 -55.80 -123.75 REMARK 500 4 ASP A 60 -87.46 -164.74 REMARK 500 4 GLU A 62 -148.85 -60.00 REMARK 500 4 GLU A 63 -59.07 69.20 REMARK 500 4 VAL A 68 -73.39 -88.77 REMARK 500 4 ARG A 70 -163.00 -70.30 REMARK 500 4 LEU A 73 32.66 39.96 REMARK 500 4 ASP A 77 57.62 -112.73 REMARK 500 5 ILE A 39 -47.15 -135.36 REMARK 500 5 ASN A 55 -54.13 79.83 REMARK 500 5 SER A 57 -43.52 -155.05 REMARK 500 5 GLU A 58 25.38 -147.61 REMARK 500 5 ASP A 60 -61.15 69.37 REMARK 500 5 GLU A 69 -71.47 -123.62 REMARK 500 5 ARG A 70 -175.22 -52.29 REMARK 500 5 ASP A 79 53.19 38.79 REMARK 500 REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K7Y A 39 81 UNP P19554 VPU_HV1S1 39 81 SEQADV 2K7Y GLY A 37 UNP P19554 EXPRESSION TAG SEQADV 2K7Y SER A 38 UNP P19554 EXPRESSION TAG SEQRES 1 A 45 GLY SER ILE ASP ARG LEU ILE ASP ARG ILE THR GLU ARG SEQRES 2 A 45 ALA GLU ASP SER GLY ASN GLU SER GLU GLY ASP GLN GLU SEQRES 3 A 45 GLU LEU SER ALA LEU VAL GLU ARG GLY HIS LEU ALA PRO SEQRES 4 A 45 TRP ASP VAL ASP ASP LEU HELIX 1 1 ILE A 39 GLU A 48 1 10 HELIX 2 2 GLN A 61 ARG A 70 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 133 0 0 2 0 0 0 6 0 0 0 4 END