HEADER LIPOPROTEIN 14-MAR-08 2K1S TITLE SOLUTION NMR STRUCTURE OF THE FOLDED C-TERMINAL FRAGMENT OF YIAD FROM TITLE 2 ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 ER553. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INNER MEMBRANE LIPOPROTEIN YIAD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RESIDUES 79-219; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YIAD, B3552, JW5657; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ABBABABAB, OMPA, LIPOPROTEIN, ALPHA BETA, INNER MEMBRANE, MEMBRANE, KEYWDS 2 PALMITATE, TRANSMEMBRANE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,L.ZHAO,K.HAMILTON,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN, AUTHOR 2 G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 19-FEB-20 2K1S 1 REMARK SEQADV REVDAT 3 13-JUL-11 2K1S 1 VERSN REVDAT 2 24-FEB-09 2K1S 1 VERSN REVDAT 1 13-MAY-08 2K1S 0 JRNL AUTH T.A.RAMELOT,L.ZHAO,K.HAMILTON,M.MAGLAQUI,R.XIAO,J.LIU, JRNL AUTH 2 M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE FOLDED C-TERMINAL FRAGMENT OF JRNL TITL 2 YIAD FROM ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET ER553. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE LINUX9, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH AND CNS WATER REFINEMENT REMARK 4 REMARK 4 2K1S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100567. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.9 MM [U-100% 13C; U-100% 15N] REMARK 210 YIAD PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.3 MM [U-5% 13C; U-100% 15N] REMARK 210 YIAD PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.9 MM [U-100% 13C; U-100% 15N] REMARK 210 YIAD PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D HCCH-COSY; REMARK 210 4D CC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1, REMARK 210 AUTOSTRUCTURE 2.1.1, X-PLOR NIH REMARK 210 2.15.0, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 9 OE1 GLU A 62 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 2 -44.43 74.78 REMARK 500 1 ASP A 39 -77.30 -75.64 REMARK 500 1 SER A 40 -71.81 -95.82 REMARK 500 1 SER A 41 -42.79 -155.21 REMARK 500 1 ALA A 43 95.46 -66.86 REMARK 500 1 THR A 74 148.31 -171.42 REMARK 500 1 PRO A 115 34.77 -78.44 REMARK 500 1 ALA A 116 -62.51 -109.53 REMARK 500 1 LEU A 141 109.47 -55.59 REMARK 500 1 GLU A 143 95.42 58.98 REMARK 500 2 MET A 3 -55.64 74.03 REMARK 500 2 MET A 14 32.03 -88.22 REMARK 500 2 ARG A 15 106.29 -56.30 REMARK 500 2 ASP A 26 -44.44 74.03 REMARK 500 2 SER A 42 -173.27 56.06 REMARK 500 2 ALA A 43 -49.99 71.01 REMARK 500 2 PRO A 64 33.40 -88.40 REMARK 500 2 ASP A 75 -157.36 -104.89 REMARK 500 2 PRO A 115 35.91 -76.42 REMARK 500 2 ASN A 117 71.00 54.59 REMARK 500 2 HIS A 147 -94.60 -128.46 REMARK 500 3 PHE A 38 -157.66 -113.01 REMARK 500 3 PRO A 64 29.15 -79.83 REMARK 500 3 THR A 74 119.66 175.93 REMARK 500 3 SER A 76 74.52 -69.90 REMARK 500 3 PRO A 115 33.30 -81.07 REMARK 500 3 SER A 121 106.90 -56.20 REMARK 500 3 LEU A 141 -90.15 -83.44 REMARK 500 3 LEU A 142 -157.02 57.15 REMARK 500 3 GLU A 143 -167.39 62.87 REMARK 500 3 HIS A 144 -64.78 70.83 REMARK 500 4 MET A 3 -39.17 75.04 REMARK 500 4 SER A 41 -169.34 -126.67 REMARK 500 4 SER A 42 -163.03 61.87 REMARK 500 4 THR A 74 -166.06 -171.68 REMARK 500 4 ASP A 75 -163.96 -113.52 REMARK 500 4 LEU A 113 86.92 63.34 REMARK 500 4 PRO A 115 41.99 -84.56 REMARK 500 4 ASN A 117 87.33 69.12 REMARK 500 4 HIS A 146 -70.50 -90.06 REMARK 500 4 HIS A 147 -97.87 55.89 REMARK 500 4 HIS A 148 -52.31 167.01 REMARK 500 5 ASP A 39 -86.17 -48.68 REMARK 500 5 SER A 40 -65.58 -98.71 REMARK 500 5 SER A 41 18.89 -159.38 REMARK 500 5 ASN A 117 88.52 64.22 REMARK 500 5 HIS A 144 -70.13 -141.96 REMARK 500 5 HIS A 145 52.98 39.46 REMARK 500 5 HIS A 146 -96.21 60.81 REMARK 500 5 HIS A 147 94.19 177.50 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER553 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15683 RELATED DB: BMRB DBREF 2K1S A 1 141 UNP P37665 YIAD_ECOLI 79 219 SEQADV 2K1S LEU A 142 UNP P37665 EXPRESSION TAG SEQADV 2K1S GLU A 143 UNP P37665 EXPRESSION TAG SEQADV 2K1S HIS A 144 UNP P37665 EXPRESSION TAG SEQADV 2K1S HIS A 145 UNP P37665 EXPRESSION TAG SEQADV 2K1S HIS A 146 UNP P37665 EXPRESSION TAG SEQADV 2K1S HIS A 147 UNP P37665 EXPRESSION TAG SEQADV 2K1S HIS A 148 UNP P37665 EXPRESSION TAG SEQADV 2K1S HIS A 149 UNP P37665 EXPRESSION TAG SEQRES 1 A 149 TYR TYR MET ASP VAL GLN GLU ALA LYS LEU ARG ASP LYS SEQRES 2 A 149 MET ARG GLY THR GLY VAL SER VAL THR ARG SER GLY ASP SEQRES 3 A 149 ASN ILE ILE LEU ASN MET PRO ASN ASN VAL THR PHE ASP SEQRES 4 A 149 SER SER SER ALA THR LEU LYS PRO ALA GLY ALA ASN THR SEQRES 5 A 149 LEU THR GLY VAL ALA MET VAL LEU LYS GLU TYR PRO LYS SEQRES 6 A 149 THR ALA VAL ASN VAL ILE GLY TYR THR ASP SER THR GLY SEQRES 7 A 149 GLY HIS ASP LEU ASN MET ARG LEU SER GLN GLN ARG ALA SEQRES 8 A 149 ASP SER VAL ALA SER ALA LEU ILE THR GLN GLY VAL ASP SEQRES 9 A 149 ALA SER ARG ILE ARG THR GLN GLY LEU GLY PRO ALA ASN SEQRES 10 A 149 PRO ILE ALA SER ASN SER THR ALA GLU GLY LYS ALA GLN SEQRES 11 A 149 ASN ARG ARG VAL GLU ILE THR LEU SER PRO LEU LEU GLU SEQRES 12 A 149 HIS HIS HIS HIS HIS HIS HELIX 1 1 MET A 3 MET A 14 1 12 HELIX 2 2 ASN A 34 PHE A 38 1 5 HELIX 3 3 LYS A 46 TYR A 63 1 18 HELIX 4 4 GLY A 79 GLY A 102 1 24 HELIX 5 5 ASP A 104 SER A 106 5 3 HELIX 6 6 THR A 124 ARG A 132 1 9 SHEET 1 A 5 SER A 20 SER A 24 0 SHEET 2 A 5 ASN A 27 PRO A 33 -1 O ILE A 29 N THR A 22 SHEET 3 A 5 ARG A 133 PRO A 140 -1 O VAL A 134 N MET A 32 SHEET 4 A 5 THR A 66 TYR A 73 -1 N ALA A 67 O SER A 139 SHEET 5 A 5 ILE A 108 GLY A 112 1 O ARG A 109 N VAL A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 172 0 0 6 5 0 0 6 0 0 0 12 END