HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JAN-08 2K07 TITLE SOLUTION NMR STRUCTURE OF HUMAN E2-LIKE UBIQUITIN-FOLD TITLE 2 MODIFIER CONJUGATING ENZYME 1 (UFC1). NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET HR41 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UFM1-CONJUGATING ENZYME 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UFC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS UFC1, UBIQUITIN CONJUGATING ENZYME, E2, UFM1, POLYMORPHISM, KEYWDS 2 UBL CONJUGATION PATHWAY, STRUCTURAL GENOMICS, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,A.ELETSKY,H.S.ATREYA,J.M.ARAMINI,R.XIAO,T.ACTON, AUTHOR 2 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 3 29-SEP-09 2K07 1 JRNL REVDAT 2 24-FEB-09 2K07 1 VERSN REVDAT 1 19-FEB-08 2K07 0 SPRSDE 19-FEB-08 2K07 1YWZ JRNL AUTH G.LIU,F.FOROUHAR,A.ELETSKY,H.S.ATREYA,J.M.ARAMINI, JRNL AUTH 2 R.XIAO,Y.J.HUANG,M.ABASHIDZE,J.SEETHARAMAN,J.LIU, JRNL AUTH 3 B.ROST,T.ACTON,G.T.MONTELIONE,J.F.HUNT,T.SZYPERSKI JRNL TITL NMR AND X-RAY STRUCTURES OF HUMAN E2-LIKE JRNL TITL 2 UBIQUITIN-FOLD MODIFIER CONJUGATING ENZYME 1 (UFC1) JRNL TITL 3 REVEAL STRUCTURAL AND FUNCTIONAL CONSERVATION IN JRNL TITL 4 THE METAZOAN UFM1-UBA5-UFC1 UBIQUINATION PATHWAY. JRNL REF J.STRUCT.FUNCT.GENOM. V. 10 127 2009 JRNL REFN ISSN 1345-711X JRNL PMID 19101823 JRNL DOI 10.1007/S10969-008-9054-7 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CYANA 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K07 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB100510. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN UFC1, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; SIMULTANEOUS REMARK 210 HETERONUCLEAR RESOLVED [1H,1H] REMARK 210 -NOESY; GFT (4,3)D HNNCABCA; REMARK 210 GFT (4,3)D CABCA(CO)NHN; GFT REMARK 210 (4,3)D HABCAB(CO)NHN; GFT (4, REMARK 210 3) HCCH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, AUTOSTRUCTURE REMARK 210 2.2.1, AUTOASSIGN 2.1, XEASY REMARK 210 1.3.1.3, NMRPIPE 2.3, VNMR REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING, DISTANCE GEOMETRY, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -161.02 -102.73 REMARK 500 1 ASN A 19 81.13 46.25 REMARK 500 1 TRP A 53 -68.69 -104.94 REMARK 500 1 ASP A 74 -85.95 68.30 REMARK 500 1 PRO A 130 -120.08 -96.72 REMARK 500 1 HIS A 161 41.41 -152.24 REMARK 500 1 CYS A 165 -43.23 -137.82 REMARK 500 1 ASN A 166 95.04 59.68 REMARK 500 1 GLN A 167 -29.98 72.49 REMARK 500 1 LEU A 168 -71.00 -60.61 REMARK 500 1 GLU A 169 -75.31 -84.76 REMARK 500 1 HIS A 172 93.61 -64.68 REMARK 500 1 HIS A 173 99.07 -172.65 REMARK 500 2 PRO A 14 151.20 -45.52 REMARK 500 2 LEU A 75 -38.64 72.65 REMARK 500 2 THR A 89 40.50 -83.19 REMARK 500 2 ILE A 97 116.24 65.95 REMARK 500 2 LYS A 108 35.81 -96.19 REMARK 500 2 PRO A 130 -153.33 -89.05 REMARK 500 2 HIS A 161 95.78 -67.44 REMARK 500 3 ASP A 3 73.16 58.40 REMARK 500 3 LEU A 75 -20.03 75.36 REMARK 500 3 ASP A 103 109.64 -50.86 REMARK 500 3 LYS A 108 -29.56 75.31 REMARK 500 3 PRO A 130 -152.88 -93.36 REMARK 500 3 LYS A 131 -5.96 77.21 REMARK 500 4 LEU A 75 -0.60 70.11 REMARK 500 4 ARG A 111 82.18 -156.49 REMARK 500 4 PRO A 130 -147.55 -90.43 REMARK 500 4 LYS A 162 -158.05 -135.96 REMARK 500 5 ALA A 20 -65.50 -140.45 REMARK 500 5 ASN A 51 72.96 -118.39 REMARK 500 5 ARG A 111 84.14 -66.60 REMARK 500 5 PRO A 130 -158.25 -89.98 REMARK 500 5 CYS A 165 87.03 55.13 REMARK 500 6 TRP A 53 -78.78 -88.79 REMARK 500 6 LEU A 75 -4.89 71.92 REMARK 500 6 PRO A 130 -159.47 -84.29 REMARK 500 6 LYS A 162 -71.56 -102.25 REMARK 500 6 LYS A 164 -79.01 -99.97 REMARK 500 7 ALA A 2 -156.00 -118.30 REMARK 500 7 PRO A 22 2.39 -69.29 REMARK 500 7 PHE A 66 86.06 -152.36 REMARK 500 7 LEU A 75 -33.43 74.46 REMARK 500 7 TYR A 110 95.55 64.17 REMARK 500 7 PRO A 130 -154.70 -95.98 REMARK 500 7 CYS A 165 50.74 -95.39 REMARK 500 7 GLN A 167 135.91 -178.90 REMARK 500 8 ALA A 107 -154.80 -66.99 REMARK 500 8 GLN A 160 105.10 -59.88 REMARK 500 8 GLU A 163 60.95 61.88 REMARK 500 8 CYS A 165 102.14 59.61 REMARK 500 8 ASN A 166 -62.93 -102.62 REMARK 500 9 VAL A 99 86.58 63.52 REMARK 500 9 LYS A 108 -168.49 -166.15 REMARK 500 9 MET A 109 100.10 69.51 REMARK 500 9 ASN A 128 70.53 -105.16 REMARK 500 9 PRO A 130 -139.83 -87.92 REMARK 500 9 LYS A 131 -7.62 75.54 REMARK 500 9 GLU A 163 89.67 67.62 REMARK 500 9 GLN A 167 100.54 -59.40 REMARK 500 9 HIS A 171 108.83 -35.98 REMARK 500 9 HIS A 172 -37.27 -136.69 REMARK 500 10 ALA A 2 -20.20 147.03 REMARK 500 10 TRP A 53 -0.25 -143.33 REMARK 500 10 PRO A 130 -164.65 -77.61 REMARK 500 10 LYS A 131 -9.87 73.66 REMARK 500 10 GLU A 163 109.08 -50.50 REMARK 500 10 GLN A 167 49.44 -80.56 REMARK 500 11 ALA A 20 -58.08 -136.08 REMARK 500 11 ALA A 98 -78.00 -96.98 REMARK 500 11 VAL A 99 75.79 51.69 REMARK 500 11 ALA A 107 -35.23 71.70 REMARK 500 11 PRO A 130 -132.45 -81.92 REMARK 500 11 LYS A 131 -45.00 70.34 REMARK 500 11 GLN A 167 90.27 -69.83 REMARK 500 12 LEU A 75 -6.95 75.40 REMARK 500 12 ALA A 98 -62.72 -95.38 REMARK 500 12 VAL A 99 83.15 60.39 REMARK 500 12 ASP A 103 92.62 -59.89 REMARK 500 12 ALA A 107 -164.08 -160.47 REMARK 500 12 PRO A 130 -158.30 -86.35 REMARK 500 12 LYS A 131 -0.55 75.77 REMARK 500 12 HIS A 161 127.51 -171.80 REMARK 500 13 ASP A 3 79.46 52.09 REMARK 500 13 ASN A 51 76.62 -114.08 REMARK 500 13 LEU A 75 -3.75 71.84 REMARK 500 13 ASP A 103 89.32 -69.29 REMARK 500 13 ALA A 107 -168.13 -170.70 REMARK 500 13 MET A 109 98.69 65.63 REMARK 500 13 ARG A 111 -81.50 -120.01 REMARK 500 13 PRO A 130 -152.38 -81.48 REMARK 500 13 LYS A 131 -20.67 76.02 REMARK 500 13 CYS A 165 86.20 61.85 REMARK 500 14 ASP A 74 -85.80 67.65 REMARK 500 14 ARG A 111 16.02 50.32 REMARK 500 14 LEU A 117 -82.20 -81.90 REMARK 500 14 PRO A 130 -146.19 -95.60 REMARK 500 15 THR A 18 97.17 -68.32 REMARK 500 15 ALA A 20 -37.39 -146.97 REMARK 500 15 ASP A 74 74.07 48.08 REMARK 500 15 LEU A 75 -33.52 72.65 REMARK 500 15 PRO A 130 -149.64 -85.03 REMARK 500 15 LYS A 164 -76.10 -126.82 REMARK 500 16 PRO A 14 151.99 -49.30 REMARK 500 16 THR A 18 -74.80 -66.13 REMARK 500 16 ALA A 20 -84.49 -81.59 REMARK 500 16 ASP A 74 62.93 66.83 REMARK 500 16 LEU A 75 -13.12 68.57 REMARK 500 16 ASP A 103 106.39 -58.75 REMARK 500 16 TYR A 110 -72.99 -109.22 REMARK 500 16 PRO A 130 -163.07 -79.12 REMARK 500 16 LYS A 131 -18.53 72.81 REMARK 500 17 ASP A 3 135.15 70.34 REMARK 500 17 ASN A 51 60.15 -112.87 REMARK 500 17 LEU A 117 -80.40 -77.65 REMARK 500 17 PRO A 130 -142.25 -97.11 REMARK 500 17 GLN A 160 80.26 75.32 REMARK 500 17 LYS A 162 162.50 179.47 REMARK 500 18 PRO A 14 151.22 -49.99 REMARK 500 18 ALA A 20 -55.17 -159.07 REMARK 500 18 ASP A 74 -85.02 64.44 REMARK 500 18 ALA A 98 -74.81 -92.62 REMARK 500 18 VAL A 99 82.38 61.49 REMARK 500 18 ARG A 111 -50.18 72.38 REMARK 500 18 PRO A 130 -146.61 -86.51 REMARK 500 18 LYS A 131 -37.61 72.89 REMARK 500 18 GLU A 149 11.16 -141.81 REMARK 500 18 LYS A 162 -82.41 -77.21 REMARK 500 18 CYS A 165 -13.21 70.13 REMARK 500 19 ALA A 2 40.55 -89.83 REMARK 500 19 LEU A 75 -22.46 73.34 REMARK 500 19 THR A 106 -164.74 -108.27 REMARK 500 19 ASN A 166 29.25 -75.85 REMARK 500 20 PRO A 22 3.32 -67.15 REMARK 500 20 ASP A 74 -85.95 64.53 REMARK 500 20 LYS A 105 -38.00 -133.85 REMARK 500 20 ALA A 107 -154.32 -74.10 REMARK 500 20 ARG A 111 109.47 -51.85 REMARK 500 20 PRO A 130 -151.64 -88.59 REMARK 500 20 LYS A 131 36.66 75.24 REMARK 500 20 CYS A 165 95.55 -68.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR41 RELATED DB: TARGETDB REMARK 900 RELATED ID: 6546 RELATED DB: BMRB DBREF 2K07 A 1 167 UNP Q9Y3C8 UFC1_HUMAN 1 167 SEQADV 2K07 LEU A 168 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 GLU A 169 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 HIS A 170 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 HIS A 171 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 HIS A 172 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 HIS A 173 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 HIS A 174 UNP Q9Y3C8 EXPRESSION TAG SEQADV 2K07 HIS A 175 UNP Q9Y3C8 EXPRESSION TAG SEQRES 1 A 175 MET ALA ASP GLU ALA THR ARG ARG VAL VAL SER GLU ILE SEQRES 2 A 175 PRO VAL LEU LYS THR ASN ALA GLY PRO ARG ASP ARG GLU SEQRES 3 A 175 LEU TRP VAL GLN ARG LEU LYS GLU GLU TYR GLN SER LEU SEQRES 4 A 175 ILE ARG TYR VAL GLU ASN ASN LYS ASN ALA ASP ASN ASP SEQRES 5 A 175 TRP PHE ARG LEU GLU SER ASN LYS GLU GLY THR ARG TRP SEQRES 6 A 175 PHE GLY LYS CYS TRP TYR ILE HIS ASP LEU LEU LYS TYR SEQRES 7 A 175 GLU PHE ASP ILE GLU PHE ASP ILE PRO ILE THR TYR PRO SEQRES 8 A 175 THR THR ALA PRO GLU ILE ALA VAL PRO GLU LEU ASP GLY SEQRES 9 A 175 LYS THR ALA LYS MET TYR ARG GLY GLY LYS ILE CYS LEU SEQRES 10 A 175 THR ASP HIS PHE LYS PRO LEU TRP ALA ARG ASN VAL PRO SEQRES 11 A 175 LYS PHE GLY LEU ALA HIS LEU MET ALA LEU GLY LEU GLY SEQRES 12 A 175 PRO TRP LEU ALA VAL GLU ILE PRO ASP LEU ILE GLN LYS SEQRES 13 A 175 GLY VAL ILE GLN HIS LYS GLU LYS CYS ASN GLN LEU GLU SEQRES 14 A 175 HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 3 GLU A 12 1 10 HELIX 2 2 ASP A 24 ALA A 49 1 26 HELIX 3 3 HIS A 120 VAL A 129 1 10 HELIX 4 4 GLY A 133 GLY A 141 1 9 HELIX 5 5 GLY A 141 LYS A 156 1 16 SHEET 1 A 3 PHE A 54 SER A 58 0 SHEET 2 A 3 ARG A 64 HIS A 73 -1 O PHE A 66 N GLU A 57 SHEET 3 A 3 LEU A 76 ASP A 85 -1 O PHE A 80 N CYS A 69 CISPEP 1 TYR A 90 PRO A 91 1 3.72 CISPEP 2 VAL A 129 PRO A 130 1 2.67 CISPEP 3 TYR A 90 PRO A 91 2 -2.23 CISPEP 4 VAL A 129 PRO A 130 2 1.02 CISPEP 5 TYR A 90 PRO A 91 3 0.16 CISPEP 6 VAL A 129 PRO A 130 3 2.21 CISPEP 7 TYR A 90 PRO A 91 4 -1.25 CISPEP 8 VAL A 129 PRO A 130 4 5.78 CISPEP 9 TYR A 90 PRO A 91 5 2.13 CISPEP 10 VAL A 129 PRO A 130 5 -0.20 CISPEP 11 TYR A 90 PRO A 91 6 1.12 CISPEP 12 VAL A 129 PRO A 130 6 6.49 CISPEP 13 TYR A 90 PRO A 91 7 0.59 CISPEP 14 VAL A 129 PRO A 130 7 1.87 CISPEP 15 TYR A 90 PRO A 91 8 -0.13 CISPEP 16 VAL A 129 PRO A 130 8 3.88 CISPEP 17 TYR A 90 PRO A 91 9 1.53 CISPEP 18 VAL A 129 PRO A 130 9 1.03 CISPEP 19 TYR A 90 PRO A 91 10 -2.68 CISPEP 20 VAL A 129 PRO A 130 10 7.17 CISPEP 21 TYR A 90 PRO A 91 11 1.06 CISPEP 22 VAL A 129 PRO A 130 11 4.14 CISPEP 23 TYR A 90 PRO A 91 12 0.37 CISPEP 24 VAL A 129 PRO A 130 12 0.19 CISPEP 25 TYR A 90 PRO A 91 13 -0.10 CISPEP 26 VAL A 129 PRO A 130 13 3.11 CISPEP 27 TYR A 90 PRO A 91 14 -1.33 CISPEP 28 VAL A 129 PRO A 130 14 5.13 CISPEP 29 TYR A 90 PRO A 91 15 1.83 CISPEP 30 VAL A 129 PRO A 130 15 1.69 CISPEP 31 TYR A 90 PRO A 91 16 0.64 CISPEP 32 VAL A 129 PRO A 130 16 2.09 CISPEP 33 TYR A 90 PRO A 91 17 2.71 CISPEP 34 VAL A 129 PRO A 130 17 4.53 CISPEP 35 TYR A 90 PRO A 91 18 -1.13 CISPEP 36 VAL A 129 PRO A 130 18 5.87 CISPEP 37 TYR A 90 PRO A 91 19 2.54 CISPEP 38 VAL A 129 PRO A 130 19 4.23 CISPEP 39 TYR A 90 PRO A 91 20 1.15 CISPEP 40 VAL A 129 PRO A 130 20 6.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 220 0 0 5 3 0 0 6 0 0 0 14 END