HEADER RNA/RNA 13-DEC-07 2JYJ TITLE RE-REFINING THE TETRALOOP-RECEPTOR RNA-RNA COMPLEX USING TITLE 2 NMR-DERIVED RESTRAINTS AND XPLOR-NIH (2.18) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (43-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA STRUCTURE, RNA/RNA COMPLEX, TETRALOOP-RECEPTOR, GAAA- KEYWDS 2 TETRALOOP, RNA GLOBAL STRUCTURE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.ZUO,J.WANG,T.R.FOSTER,C.D.SCHWIETERS,D.M.TIEDE, AUTHOR 2 S.E.BUTCHER,Y.WANG REVDAT 2 24-FEB-09 2JYJ 1 VERSN REVDAT 1 07-OCT-08 2JYJ 0 JRNL AUTH J.H.DAVIS,M.TONELLI,L.G.SCOTT,L.JAEGER, JRNL AUTH 2 J.R.WILLIAMSON,S.E.BUTCHER JRNL TITL RNA HELICAL PACKING IN SOLUTION: NMR STRUCTURE OF JRNL TITL 2 A 30 KDA GAAA TETRALOOP-RECEPTOR COMPLEX. JRNL REF J.MOL.BIOL. V. 351 371 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16002091 JRNL DOI 10.1016/J.JMB.2005.05.069 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.18 REMARK 3 AUTHORS : SCHWIETERS, C.D. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS ENSEMBLE OF THE STRUCTURES WERE REMARK 3 RE-REFINED WITH NMR-DERIVED RESTRAINTS. THE ORIGINAL REMARK 3 REFINEMENTS HAVE BEEN PUBLISHED IN JMB (2005, 351(2), PP351- REMARK 3 82). WE RE-REFINED THE STRUCTURES OF THE TETRALOOP-RECEPTOR REMARK 3 RNA/RNA COMPLEX USING THE RESTRAINT FILES WHOSE FORMATS ARE REMARK 3 CONSISTENT WITH XPLOR-NIH. NO SAXS DATA WAS USED IN THIS REMARK 3 REFINEMENT. REMARK 4 REMARK 4 2JYJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB100450. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 8 MG/ML (W/V) TETRALOOP- REMARK 210 RECEPTOR RNA/RNA COMPLEX, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JYH RELATED DB: PDB REMARK 900 RIGID-BODY REFINEMENT USING SAXS REMARK 900 RELATED ID: 2JYF RELATED DB: PDB REMARK 900 GLOBAL REFINEMENT USING SAXS DBREF 2JYJ A 1 43 PDB 2JYJ 2JYJ 1 43 DBREF 2JYJ B 44 86 PDB 2JYJ 2JYJ 44 86 SEQRES 1 A 43 G G G A U A U G G A A G A SEQRES 2 A 43 A C C G G G G A A A C U U SEQRES 3 A 43 G G U U C U U C C U A A G SEQRES 4 A 43 U C C U SEQRES 1 B 43 G G G A U A U G G A A G A SEQRES 2 B 43 A C C G G G G A A A C U U SEQRES 3 B 43 G G U U C U U C C U A A G SEQRES 4 B 43 U C C U CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 60 0 0 0 0 0 0 6 0 0 0 8 END