HEADER LIPOPROTEIN 31-OCT-07 2JWY TITLE SOLUTION NMR STRUCTURE OF UNCHARACTERIZED LIPOPROTEIN YAJI FROM TITLE 2 ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER540 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED LIPOPROTEIN YAJI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YAJI, B0412, JW5056; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS LIPOPROTEIN, YAJI, STRUCTURAL GENOMICS, GFT NMR, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, NESG, MEMBRANE, PALMITATE, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,R.XIAO,C.CHEN,J.LIU,M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 2 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 19-FEB-20 2JWY 1 REMARK SEQADV REVDAT 3 13-JUL-11 2JWY 1 VERSN REVDAT 2 24-FEB-09 2JWY 1 VERSN REVDAT 1 20-NOV-07 2JWY 0 JRNL AUTH G.LIU,R.XIAO,G.SWAPNA,T.B.ACTON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF UNCHARACTERIZED LIPOPROTEIN YAJI JRNL TITL 2 FROM ESCHERICHIA COLI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JWY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000100394. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.77 MM [U-100% 13C; U-100% 15N] REMARK 210 LIPOPROTEIN YAJI, 93% H2O/7% D2O; REMARK 210 0.77 MM [U-10% 13C; U-99% 15N] REMARK 210 LIPOPROTEIN YAJI, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D SIMULTANEOUS CN-NOESY; 2D 1H REMARK 210 -15N HSQC; 3D HNCO; 4,3D GFT REMARK 210 CABCACONHN; 4,3D GFT HNNCABCA; 4, REMARK 210 3D GFT HCCH; 4,3D GFT REMARK 210 HABCABCONHN; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, AUTOSTRUCTURE 2.1.1, REMARK 210 XEASY 1.3.1, NMRPIPE 2.3, REMARK 210 TOPSPIN 1.3, VNMR, AUTOASSIGN REMARK 210 2.4.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 10 93.14 -69.30 REMARK 500 1 GLN A 19 94.36 -59.32 REMARK 500 1 ASP A 154 73.63 54.53 REMARK 500 1 MET A 159 30.06 37.54 REMARK 500 2 SER A 15 123.14 -170.86 REMARK 500 2 LYS A 52 77.31 -67.52 REMARK 500 2 PRO A 91 106.96 -52.82 REMARK 500 2 LEU A 128 -169.10 -126.09 REMARK 500 2 SER A 131 82.59 -65.89 REMARK 500 2 MET A 159 -10.60 70.45 REMARK 500 2 HIS A 167 92.62 69.78 REMARK 500 3 GLN A 4 145.69 -173.42 REMARK 500 3 ASN A 18 77.90 -68.17 REMARK 500 4 GLU A 20 -158.15 -91.74 REMARK 500 4 LYS A 52 75.05 -64.56 REMARK 500 4 ILE A 155 94.02 -68.04 REMARK 500 4 HIS A 163 94.65 -165.56 REMARK 500 5 GLN A 23 106.58 -51.24 REMARK 500 5 SER A 43 102.90 -160.78 REMARK 500 5 LYS A 52 77.89 -66.84 REMARK 500 5 SER A 131 95.46 -66.93 REMARK 500 5 HIS A 167 -30.08 74.20 REMARK 500 6 HIS A 12 98.26 -166.15 REMARK 500 6 GLN A 19 -154.34 -88.43 REMARK 500 6 ASN A 25 109.06 52.14 REMARK 500 6 LYS A 52 83.67 -64.39 REMARK 500 6 ILE A 155 97.33 -64.53 REMARK 500 6 HIS A 167 90.29 73.94 REMARK 500 7 HIS A 12 117.77 -168.85 REMARK 500 7 ASN A 18 -164.48 -104.75 REMARK 500 7 GLN A 23 105.51 66.42 REMARK 500 7 LYS A 52 88.41 -63.43 REMARK 500 7 HIS A 164 69.90 63.18 REMARK 500 7 HIS A 167 88.20 178.82 REMARK 500 8 GLN A 3 14.58 55.95 REMARK 500 8 SER A 5 99.23 -64.80 REMARK 500 8 ASN A 18 -79.36 -117.25 REMARK 500 8 GLN A 19 -168.22 -167.96 REMARK 500 8 GLN A 23 -175.57 -64.19 REMARK 500 8 LYS A 52 80.95 -66.47 REMARK 500 8 ILE A 71 104.13 -59.22 REMARK 500 8 ILE A 155 94.32 -63.86 REMARK 500 8 GLU A 162 -81.45 -84.29 REMARK 500 8 HIS A 166 87.69 65.19 REMARK 500 8 HIS A 167 39.66 -155.63 REMARK 500 9 GLU A 20 -175.61 -65.85 REMARK 500 9 LYS A 52 27.29 -79.61 REMARK 500 9 ILE A 71 96.62 -64.03 REMARK 500 9 GLN A 105 41.81 -92.25 REMARK 500 9 HIS A 167 79.52 -158.53 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER540 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15542 RELATED DB: BMRB DBREF 2JWY A 2 160 UNP P46122 YAJI_ECOLI 21 179 SEQADV 2JWY MET A 1 UNP P46122 EXPRESSION TAG SEQADV 2JWY LEU A 161 UNP P46122 EXPRESSION TAG SEQADV 2JWY GLU A 162 UNP P46122 EXPRESSION TAG SEQADV 2JWY HIS A 163 UNP P46122 EXPRESSION TAG SEQADV 2JWY HIS A 164 UNP P46122 EXPRESSION TAG SEQADV 2JWY HIS A 165 UNP P46122 EXPRESSION TAG SEQADV 2JWY HIS A 166 UNP P46122 EXPRESSION TAG SEQADV 2JWY HIS A 167 UNP P46122 EXPRESSION TAG SEQADV 2JWY HIS A 168 UNP P46122 EXPRESSION TAG SEQRES 1 A 168 MET VAL GLN GLN SER GLU VAL ARG GLN MET LYS HIS SER SEQRES 2 A 168 VAL SER THR LEU ASN GLN GLU MET THR GLN LEU ASN GLN SEQRES 3 A 168 GLU THR VAL LYS ILE THR GLN GLN ASN ARG LEU ASN ALA SEQRES 4 A 168 LYS SER SER SER GLY VAL TYR LEU LEU PRO GLY ALA LYS SEQRES 5 A 168 THR PRO ALA ARG LEU GLU SER GLN ILE GLY THR LEU ARG SEQRES 6 A 168 MET SER LEU VAL ASN ILE THR PRO ASP ALA ASP GLY THR SEQRES 7 A 168 THR LEU THR LEU ARG ILE GLN GLY GLU SER ASN ASP PRO SEQRES 8 A 168 LEU PRO ALA PHE SER GLY THR VAL GLU TYR GLY GLN ILE SEQRES 9 A 168 GLN GLY THR ILE ASP ASN PHE GLN GLU ILE ASN VAL GLN SEQRES 10 A 168 ASN GLN LEU ILE ASN ALA PRO ALA SER VAL LEU ALA PRO SEQRES 11 A 168 SER ASP VAL ASP ILE PRO LEU GLN LEU LYS GLY ILE SER SEQRES 12 A 168 VAL ASP GLN LEU GLY PHE VAL ARG ILE HIS ASP ILE GLN SEQRES 13 A 168 PRO VAL MET GLN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 25 SER A 41 1 17 HELIX 2 2 SER A 143 LEU A 147 5 5 SHEET 1 A 4 VAL A 45 LEU A 47 0 SHEET 2 A 4 PHE A 149 PRO A 157 -1 O ILE A 152 N VAL A 45 SHEET 3 A 4 PHE A 95 ILE A 104 -1 N SER A 96 O GLN A 156 SHEET 4 A 4 GLU A 113 ALA A 123 -1 O ILE A 114 N GLN A 103 SHEET 1 B 4 ALA A 55 GLU A 58 0 SHEET 2 B 4 THR A 63 PRO A 73 -1 O LEU A 64 N LEU A 57 SHEET 3 B 4 THR A 78 GLY A 86 -1 O GLN A 85 N ARG A 65 SHEET 4 B 4 ASP A 132 LEU A 139 -1 O LEU A 137 N LEU A 80 CISPEP 1 ALA A 129 PRO A 130 1 -0.19 CISPEP 2 ALA A 129 PRO A 130 2 -1.33 CISPEP 3 ALA A 129 PRO A 130 3 0.00 CISPEP 4 ALA A 129 PRO A 130 4 1.04 CISPEP 5 ALA A 129 PRO A 130 5 -1.89 CISPEP 6 ALA A 129 PRO A 130 6 0.48 CISPEP 7 ALA A 129 PRO A 130 7 -3.80 CISPEP 8 ALA A 129 PRO A 130 8 2.17 CISPEP 9 ALA A 129 PRO A 130 9 0.72 CISPEP 10 ALA A 129 PRO A 130 10 -1.74 CISPEP 11 ALA A 129 PRO A 130 11 -1.40 CISPEP 12 ALA A 129 PRO A 130 12 -0.89 CISPEP 13 ALA A 129 PRO A 130 13 -1.84 CISPEP 14 ALA A 129 PRO A 130 14 0.89 CISPEP 15 ALA A 129 PRO A 130 15 -0.24 CISPEP 16 ALA A 129 PRO A 130 16 -2.02 CISPEP 17 ALA A 129 PRO A 130 17 1.01 CISPEP 18 ALA A 129 PRO A 130 18 -0.96 CISPEP 19 ALA A 129 PRO A 130 19 -1.70 CISPEP 20 ALA A 129 PRO A 130 20 -2.54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 148 0 0 2 8 0 0 6 0 0 0 13 END