HEADER TRANSFERASE 06-AUG-07 2JTS TITLE RHODANESE WITH ANIONS FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE SHOCK PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 GENE: PSPE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS SOLUTION STRUCTURE RHODANESE ANIONS, STRESS RESPONSE, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR C.JIN,H.LI REVDAT 2 24-FEB-09 2JTS 1 VERSN REVDAT 1 17-JUN-08 2JTS 0 JRNL AUTH H.LI,F.YANG,X.KANG,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURES AND BACKBONE DYNAMICS OF JRNL TITL 2 ESCHERICHIA COLI RHODANESE PSPE IN ITS SULFUR-FREE JRNL TITL 3 AND PERSULFIDE-INTERMEDIATE FORMS: IMPLICATIONS JRNL TITL 4 FOR THE CATALYTIC MECHANISM OF RHODANESE. JRNL REF BIOCHEMISTRY V. 47 4377 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18355042 JRNL DOI 10.1021/BI800039N REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JTS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB100280. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.06 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] REMARK 210 RHODANESE, 30 MM SODIUM REMARK 210 PHOSPHATE, 40 MM DTT, 30 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, 2D 1H-15N HSQC, 3D REMARK 210 CBCA(CO)NH, 3D C(CO)NH, 3D REMARK 210 HNCO, 3D HNCA, 3D HNCACB, 3D REMARK 210 HBHA(CO)NH, 3D HN(CO)CA, 3D REMARK 210 HCCH-TOCSY, 3D 1H-15N TOCSY, REMARK 210 3D HCCH-COSY, 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, DYANA, MOLMOL, REMARK 210 NMRPIPE, NMRVIEW, SANE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP A 4 CD1 - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 TRP A 4 NE1 - CE2 - CZ2 ANGL. DEV. = -12.0 DEGREES REMARK 500 1 TRP A 4 NE1 - CE2 - CD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 1 TRP A 4 CG - CD2 - CE3 ANGL. DEV. = -15.1 DEGREES REMARK 500 1 TRP A 4 CZ3 - CH2 - CZ2 ANGL. DEV. = -8.4 DEGREES REMARK 500 1 TRP A 4 CH2 - CZ2 - CE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 1 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 1 TYR A 13 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 1 TYR A 13 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 ARG A 32 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 1 ARG A 32 NH1 - CZ - NH2 ANGL. DEV. = 10.6 DEGREES REMARK 500 1 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -13.8 DEGREES REMARK 500 1 TYR A 47 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 ARG A 52 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 1 ARG A 52 NH1 - CZ - NH2 ANGL. DEV. = 10.2 DEGREES REMARK 500 1 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -13.4 DEGREES REMARK 500 1 TYR A 66 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 1 TYR A 66 CB - CG - CD2 ANGL. DEV. = -11.4 DEGREES REMARK 500 1 TYR A 66 CG - CD1 - CE1 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 LYS A 76 CG - CD - CE ANGL. DEV. = -22.1 DEGREES REMARK 500 2 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 4 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 5 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 12 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 GLU A 16 149.37 -173.83 REMARK 500 2 ARG A 32 -27.84 -140.94 REMARK 500 3 GLN A 15 -71.29 -81.69 REMARK 500 3 PRO A 38 -9.76 -58.18 REMARK 500 3 ARG A 52 -45.80 -137.26 REMARK 500 3 TYR A 66 158.41 -46.24 REMARK 500 3 HIS A 68 23.86 -147.92 REMARK 500 4 ARG A 8 -162.84 -109.56 REMARK 500 4 CYS A 48 -139.34 -130.01 REMARK 500 5 GLN A 15 -36.47 -132.08 REMARK 500 5 THR A 67 -40.72 -136.33 REMARK 500 6 ALA A 36 -51.08 -134.74 REMARK 500 6 THR A 67 -44.59 -140.90 REMARK 500 6 ALA A 79 27.39 -78.57 REMARK 500 7 ALA A 50 0.74 53.85 REMARK 500 8 VAL A 7 52.53 -114.60 REMARK 500 9 GLU A 31 -53.42 -122.06 REMARK 500 9 ALA A 36 -38.14 -130.08 REMARK 500 9 ARG A 52 -53.87 -144.15 REMARK 500 10 GLN A 19 96.71 -69.99 REMARK 500 13 ALA A 79 26.43 -76.27 REMARK 500 15 GLN A 15 -33.82 -131.76 REMARK 500 15 HIS A 68 31.58 -141.32 REMARK 500 16 ARG A 8 -169.12 -110.27 REMARK 500 16 THR A 67 -37.01 -137.95 REMARK 500 16 HIS A 68 34.87 -142.67 REMARK 500 17 VAL A 7 35.86 -98.85 REMARK 500 17 CYS A 48 -139.56 -133.52 REMARK 500 17 ALA A 50 -39.31 -151.83 REMARK 500 18 THR A 67 -34.95 -138.47 REMARK 500 19 ARG A 8 -168.43 -100.21 REMARK 500 19 MET A 64 0.19 -69.91 REMARK 500 21 PRO A 38 21.77 -74.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 66 0.27 SIDE_CHAIN REMARK 500 8 TYR A 47 0.09 SIDE_CHAIN REMARK 500 10 TYR A 66 0.07 SIDE_CHAIN REMARK 500 15 TYR A 66 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JTQ RELATED DB: PDB REMARK 900 RELATED ID: 2JTR RELATED DB: PDB DBREF 2JTS A 1 85 UNP P23857 PSPE_ECOLI 20 104 SEQRES 1 A 85 ALA GLU HIS TRP ILE ASP VAL ARG VAL PRO GLU GLN TYR SEQRES 2 A 85 GLN GLN GLU HIS VAL GLN GLY ALA ILE ASN ILE PRO LEU SEQRES 3 A 85 LYS GLU VAL LYS GLU ARG ILE ALA THR ALA VAL PRO ASP SEQRES 4 A 85 LYS ASN ASP THR VAL LYS VAL TYR CYS ASN ALA GLY ARG SEQRES 5 A 85 GLN SER GLY GLN ALA LYS GLU ILE LEU SER GLU MET GLY SEQRES 6 A 85 TYR THR HIS VAL GLU ASN ALA GLY GLY LEU LYS ASP ILE SEQRES 7 A 85 ALA MET PRO LYS VAL LYS GLY HELIX 1 1 VAL A 9 GLU A 16 1 8 HELIX 2 2 GLU A 28 VAL A 37 1 10 HELIX 3 3 GLY A 51 GLY A 65 1 15 SHEET 1 A 4 ALA A 21 ASN A 23 0 SHEET 2 A 4 GLU A 2 ASP A 6 1 N ASP A 6 O ILE A 22 SHEET 3 A 4 THR A 43 CYS A 48 1 O LYS A 45 N HIS A 3 SHEET 4 A 4 VAL A 69 GLY A 74 1 O GLU A 70 N VAL A 46 SHEET 1 B 2 HIS A 17 VAL A 18 0 SHEET 2 B 2 LYS A 82 VAL A 83 -1 O VAL A 83 N HIS A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 177 0 0 3 6 0 0 6 0 0 0 7 END