HEADER SIGNALING PROTEIN 18-JUL-07 2JT4 TITLE SOLUTION STRUCTURE OF THE SLA1 SH3-3-UBIQUITIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSKELETON ASSEMBLY CONTROL PROTEIN SLA1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: SH3 DOMAIN SEQUENCE DATABASE RESIDUES 350-420; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SLA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: UBI1, RPL40A; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS ENDOCYTOSIS, MONOUBIQUITIN SIGNALING, UBIQUITIN-BINDING KEYWDS 2 MOTIF, SH3, UBIQUITIN, ACTIN-BINDING, CYTOPLASM, KEYWDS 3 CYTOSKELETON, PHOSPHORYLATION, SH3 DOMAIN, DNA DAMAGE, DNA KEYWDS 4 REPAIR, NUCLEUS, UBL CONJUGATION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.HE,I.RADHAKRISHNAN REVDAT 2 24-FEB-09 2JT4 1 VERSN REVDAT 1 25-SEP-07 2JT4 0 JRNL AUTH Y.HE,L.HICKE,I.RADHAKRISHNAN JRNL TITL STRUCTURAL BASIS FOR UBIQUITIN RECOGNITION BY SH3 JRNL TITL 2 DOMAINS JRNL REF J.MOL.BIOL. V. 373 190 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17765920 JRNL DOI 10.1016/J.JMB.2007.07.074 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JT4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB100256. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-98% 13C; U-98% 15N] REMARK 210 SH3, 0.9 MM UBIQUITIN, 90% REMARK 210 H2O/10% D2O; 0.9 MM [U-98% REMARK 210 13C; U-98% 15N] UBIQUITIN, 0.9 REMARK 210 MM SH3, 90% H2O/10% D2O; 0.9 REMARK 210 MM [U-98% 13C; U-98% 15N] SH3, REMARK 210 0.9 MM UBIQUITIN, 100% D2O; REMARK 210 0.9 MM [U-98% 13C; U-98% 15N] REMARK 210 UBIQUITIN, 0.9 MM SH3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB, 3D C(CO)NH-TOCSY, REMARK 210 3D HNCO, 3D H(CCO)NH-TOCSY, 3D REMARK 210 15N-EDITED NOESY, 3D HCCH- REMARK 210 COSY, 3D HCCH-TOCSY, 3D 13C- REMARK 210 EDITED NOESY, 3D 13C-FILTERED, REMARK 210 13C-EDITED NOESY, 2D 15N,13C- REMARK 210 DOUBLE-HALF-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, FELIX, NMRVIEW, ARIA, REMARK 210 CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT ENERGIES, RESTRAINT REMARK 210 VIOLATIONS AND RMS DEVIATIONS REMARK 210 FROM IDEAL COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 65 -42.86 70.14 REMARK 500 1 ASP A 66 -71.73 -49.33 REMARK 500 2 SER A 5 -64.10 -100.10 REMARK 500 2 SER A 50 -62.47 -149.93 REMARK 500 2 ARG A 65 -23.53 73.75 REMARK 500 2 ASP A 66 138.06 71.92 REMARK 500 2 LYS A 67 29.24 -159.37 REMARK 500 2 VAL B 17 -157.98 -127.17 REMARK 500 2 LEU B 73 23.32 -78.01 REMARK 500 3 SER A 3 86.46 63.16 REMARK 500 3 SER A 39 -89.88 -106.30 REMARK 500 3 LYS A 40 -55.04 165.17 REMARK 500 3 ARG A 65 -71.33 -56.48 REMARK 500 3 ASP A 66 4.85 -151.48 REMARK 500 3 HIS A 69 -174.62 63.71 REMARK 500 3 LYS B 33 -72.73 -77.98 REMARK 500 4 SER A 3 -166.72 65.41 REMARK 500 4 GLU A 18 -33.97 -130.87 REMARK 500 4 ASP A 41 -63.44 -120.71 REMARK 500 4 ARG A 65 -64.24 -103.99 REMARK 500 4 LYS B 33 -60.92 -107.82 REMARK 500 4 ALA B 46 17.22 58.53 REMARK 500 4 ARG B 74 80.71 43.93 REMARK 500 5 LYS A 4 83.13 64.69 REMARK 500 5 LYS A 6 -167.30 62.74 REMARK 500 5 ASP A 49 -70.73 -62.84 REMARK 500 5 ARG A 65 -54.58 -163.91 REMARK 500 5 ASP A 66 -173.16 -170.47 REMARK 500 5 THR A 70 93.90 49.16 REMARK 500 5 LYS B 33 -63.05 -92.68 REMARK 500 5 ASN B 60 71.69 58.86 REMARK 500 5 LEU B 73 90.76 -67.48 REMARK 500 6 ALA A 2 -44.65 -136.10 REMARK 500 6 SER A 3 85.99 51.58 REMARK 500 6 LYS A 4 89.42 63.47 REMARK 500 6 LYS A 37 27.27 -141.71 REMARK 500 6 LYS A 40 -69.45 70.17 REMARK 500 6 ASP A 66 -87.99 65.84 REMARK 500 6 LYS A 67 -7.47 -147.22 REMARK 500 6 LYS A 68 115.99 69.45 REMARK 500 7 LYS A 4 -75.27 -142.20 REMARK 500 7 SER A 5 -49.56 -145.77 REMARK 500 7 GLU A 18 -41.28 -141.62 REMARK 500 7 ARG A 65 -82.15 -140.68 REMARK 500 7 ASN B 60 90.92 63.27 REMARK 500 8 ALA A 2 94.76 63.31 REMARK 500 8 LEU A 34 -78.27 -76.37 REMARK 500 8 LYS A 37 -62.72 -94.51 REMARK 500 8 VAL A 64 49.48 -82.47 REMARK 500 8 LYS A 68 94.33 63.21 REMARK 500 8 HIS A 69 -79.66 -163.45 REMARK 500 8 THR A 70 76.20 48.86 REMARK 500 8 ALA B 46 19.49 59.37 REMARK 500 8 ARG B 74 -66.54 67.63 REMARK 500 9 LYS A 37 21.74 -148.20 REMARK 500 9 LYS A 40 -64.96 67.23 REMARK 500 9 ARG A 65 -89.93 -141.40 REMARK 500 9 ASP A 66 -158.84 -146.38 REMARK 500 9 LYS A 67 -51.49 77.97 REMARK 500 9 LYS B 33 -70.07 -82.72 REMARK 500 10 ASP A 49 -71.62 -62.85 REMARK 500 10 ARG A 65 76.46 -169.48 REMARK 500 10 LYS A 67 76.83 52.15 REMARK 500 10 LYS B 33 -64.89 -90.64 REMARK 500 10 PRO B 37 121.44 -37.37 REMARK 500 11 ALA A 2 177.40 63.75 REMARK 500 11 LEU A 34 -77.16 -94.07 REMARK 500 11 ASP A 41 -71.46 -140.70 REMARK 500 11 ARG A 65 -86.47 -99.88 REMARK 500 11 LYS A 67 100.86 66.59 REMARK 500 11 THR A 70 -98.26 46.60 REMARK 500 11 GLU B 51 -85.48 -68.95 REMARK 500 11 ASP B 52 -58.66 -179.07 REMARK 500 11 LEU B 73 86.68 55.60 REMARK 500 12 SER A 3 168.17 78.12 REMARK 500 12 LYS A 4 -75.16 -173.47 REMARK 500 12 LYS A 6 148.56 71.27 REMARK 500 12 ARG A 65 -26.73 160.25 REMARK 500 12 ASP A 66 -0.38 79.19 REMARK 500 12 THR A 70 -21.72 -169.62 REMARK 500 12 LEU B 73 26.42 -73.95 REMARK 500 12 ARG B 74 103.91 64.00 REMARK 500 13 ALA A 2 100.82 68.21 REMARK 500 13 ASP A 41 -52.82 -127.95 REMARK 500 13 ARG A 65 -65.08 -133.16 REMARK 500 13 ASP A 66 116.23 171.19 REMARK 500 13 LYS A 67 177.41 59.25 REMARK 500 13 ASN B 60 68.50 64.89 REMARK 500 14 SER A 3 35.66 -81.11 REMARK 500 14 SER A 39 -81.07 -125.00 REMARK 500 14 LYS A 40 -54.67 -175.79 REMARK 500 14 GLN B 41 99.71 -68.09 REMARK 500 14 LEU B 73 30.14 -82.98 REMARK 500 15 SER A 3 172.58 65.82 REMARK 500 15 LYS A 4 -48.41 -131.20 REMARK 500 15 SER A 5 -57.51 -139.89 REMARK 500 15 ASP A 66 -61.89 -160.12 REMARK 500 15 ASN B 60 76.96 60.28 REMARK 500 15 ARG B 74 -67.57 65.68 REMARK 500 16 SER A 5 138.87 73.56 REMARK 500 16 ASP A 66 -84.23 178.68 REMARK 500 16 LYS A 67 95.01 -163.55 REMARK 500 16 LYS B 33 -69.37 -91.02 REMARK 500 16 LEU B 73 85.76 63.02 REMARK 500 17 LEU A 34 -74.16 -98.16 REMARK 500 17 ASP A 36 -58.17 -122.00 REMARK 500 17 ASP A 66 -37.80 72.13 REMARK 500 17 LYS B 33 -77.48 -74.38 REMARK 500 17 ASN B 60 67.98 60.91 REMARK 500 17 ARG B 74 87.49 58.41 REMARK 500 18 LYS A 4 34.48 -97.35 REMARK 500 18 SER A 5 90.58 48.05 REMARK 500 18 LEU A 34 -74.73 -80.02 REMARK 500 18 ASP A 36 -62.85 -128.53 REMARK 500 18 ASP A 41 -51.67 -124.89 REMARK 500 18 ASP A 66 -12.72 -166.11 REMARK 500 18 LYS A 67 161.19 76.65 REMARK 500 18 HIS A 69 -90.00 -127.39 REMARK 500 18 ALA B 46 18.47 58.69 REMARK 500 19 SER A 3 108.87 68.83 REMARK 500 19 LYS A 4 108.34 70.67 REMARK 500 19 LEU A 34 -76.50 -92.52 REMARK 500 19 ASP A 66 100.22 67.47 REMARK 500 19 LYS A 67 77.00 68.13 REMARK 500 19 LEU B 73 100.33 -55.05 REMARK 500 20 ALA A 2 119.94 -161.86 REMARK 500 20 LYS A 4 81.17 59.61 REMARK 500 20 LYS A 6 35.50 -89.82 REMARK 500 20 LYS A 7 133.28 64.39 REMARK 500 20 ARG A 65 -50.38 -164.00 REMARK 500 20 HIS A 69 33.21 -86.11 REMARK 500 20 ARG B 74 -69.18 71.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 650 THE AUTHORS STATE THAT THESE RECORDS REFLECT CONSENSUS REMARK 650 START AND END RESIDUES IN THE 20 NMR MODELS. REMARK 650 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 700 THE AUTHORS STATE THAT THESE RECORDS REFLECT CONSENSUS REMARK 700 START AND END RESIDUES IN THE 20 NMR MODELS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 RELATED ID: 1Z9Z RELATED DB: PDB DBREF 2JT4 A 1 71 UNP P32790 SLA1_YEAST 350 420 DBREF 2JT4 B 1 76 UNP P61864 UBIQ_YEAST 1 76 SEQRES 1 A 71 MET ALA SER LYS SER LYS LYS ARG GLY ILE VAL GLN TYR SEQRES 2 A 71 ASP PHE MET ALA GLU SER GLN ASP GLU LEU THR ILE LYS SEQRES 3 A 71 SER GLY ASP LYS VAL TYR ILE LEU ASP ASP LYS LYS SER SEQRES 4 A 71 LYS ASP TRP TRP MET CYS GLN LEU VAL ASP SER GLY LYS SEQRES 5 A 71 SER GLY LEU VAL PRO ALA GLN PHE ILE GLU PRO VAL ARG SEQRES 6 A 71 ASP LYS LYS HIS THR GLU SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU SER SER ASP THR ILE ASP ASN VAL SEQRES 3 B 76 LYS SER LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 ILE B 23 LYS B 33 1 11 SHEET 1 A 5 SER A 53 PRO A 57 0 SHEET 2 A 5 TRP A 42 LEU A 47 -1 N TRP A 43 O VAL A 56 SHEET 3 A 5 LYS A 30 ASP A 35 -1 N TYR A 32 O GLN A 46 SHEET 4 A 5 LYS A 7 VAL A 11 -1 N LYS A 7 O ILE A 33 SHEET 5 A 5 ILE A 61 PRO A 63 -1 O GLU A 62 N ILE A 10 SHEET 1 B 5 THR B 12 GLU B 16 0 SHEET 2 B 5 GLN B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 B 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 B 5 LYS B 48 LEU B 50 -1 O LYS B 48 N PHE B 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 229 0 0 1 10 0 0 6 0 0 0 12 END