HEADER HYDROLASE 26-JAN-07 2JNK TITLE SOLUTION STRUCTURE OF A DOCKERIN-CONTAINING MODULAR PAIR FROM A FAMILY TITLE 2 84 GLYCOSIDE HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONONGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1498-1628; COMPND 5 SYNONYM: HYALURONIDASE, MU TOXIN; COMPND 6 EC: 3.2.1.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: NAGH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21B KEYWDS CALCIUM-BINDING, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.CHITAYAT,J.J.ADAMS,E.A.BAYER,S.P.SMITH REVDAT 5 05-FEB-20 2JNK 1 SEQADV REVDAT 4 21-DEC-16 2JNK 1 TITLE VERSN REVDAT 3 24-FEB-09 2JNK 1 VERSN REVDAT 2 21-OCT-08 2JNK 1 JRNL REVDAT 1 29-JAN-08 2JNK 0 JRNL AUTH S.CHITAYAT,J.J.ADAMS,H.S.FURNESS,E.A.BAYER,S.P.SMITH JRNL TITL THE SOLUTION STRUCTURE OF THE C-TERMINAL MODULAR PAIR FROM JRNL TITL 2 CLOSTRIDIUM PERFRINGENS MU-TOXIN REVEALS A NONCELLULOSOMAL JRNL TITL 3 DOCKERIN MODULE JRNL REF J.MOL.BIOL. V. 381 1202 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18602403 JRNL DOI 10.1016/J.JMB.2008.06.050 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.2.2, CNS REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1000 MOLECULAR DYNAMIC STEPS REMARK 4 REMARK 4 2JNK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000100056. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 25 MM HEPES, 50 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCLIUM REMARK 210 CHLORIDE, 0.5 MM DSS, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D HNHA; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2, NMRPIPE, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 35 H VAL A 39 1.46 REMARK 500 O THR A 38 H ASN A 42 1.50 REMARK 500 O LEU A 16 H SER A 20 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -170.15 -60.32 REMARK 500 1 PHE A 24 40.86 168.61 REMARK 500 1 ASN A 25 177.07 179.09 REMARK 500 1 HIS A 30 -72.61 -78.98 REMARK 500 1 ALA A 53 44.77 -75.78 REMARK 500 1 THR A 54 -124.74 -86.18 REMARK 500 1 GLU A 78 122.31 -14.14 REMARK 500 1 GLU A 79 -22.98 -38.04 REMARK 500 1 ASP A 91 -41.63 -167.79 REMARK 500 1 ALA A 96 -40.40 -162.78 REMARK 500 1 MET A 97 -74.67 -90.16 REMARK 500 1 ILE A 102 99.65 40.35 REMARK 500 1 ASN A 107 64.46 -107.75 REMARK 500 1 LEU A 112 -28.90 -39.16 REMARK 500 1 LYS A 114 32.51 70.90 REMARK 500 1 SER A 117 109.89 -175.70 REMARK 500 1 ASP A 119 -156.17 -135.08 REMARK 500 1 PHE A 125 -74.27 -56.30 REMARK 500 1 HIS A 135 40.03 -144.50 REMARK 500 1 HIS A 137 -64.68 -169.58 REMARK 500 1 HIS A 138 -175.80 -171.35 REMARK 500 1 HIS A 139 152.61 61.80 REMARK 500 2 LYS A 3 44.67 -94.20 REMARK 500 2 PHE A 24 40.82 173.85 REMARK 500 2 HIS A 30 -70.54 -76.92 REMARK 500 2 LYS A 31 143.74 -172.64 REMARK 500 2 LYS A 34 -12.32 -48.52 REMARK 500 2 ASP A 35 -69.82 -95.96 REMARK 500 2 ALA A 53 49.32 -76.95 REMARK 500 2 THR A 54 -126.68 -92.90 REMARK 500 2 SER A 74 43.99 -108.56 REMARK 500 2 LEU A 76 48.78 -75.29 REMARK 500 2 GLU A 78 121.49 -11.85 REMARK 500 2 GLU A 79 -23.44 -36.67 REMARK 500 2 SER A 80 37.32 -141.21 REMARK 500 2 ASP A 91 -70.92 174.13 REMARK 500 2 ALA A 96 -29.41 -158.72 REMARK 500 2 MET A 97 -75.03 -90.12 REMARK 500 2 ILE A 102 99.29 38.01 REMARK 500 2 THR A 106 -78.85 -101.85 REMARK 500 2 LYS A 114 31.37 76.52 REMARK 500 2 SER A 117 115.50 -178.06 REMARK 500 2 ASP A 119 -146.97 -134.61 REMARK 500 2 HIS A 136 93.99 -68.38 REMARK 500 2 HIS A 137 95.40 59.50 REMARK 500 2 HIS A 138 32.08 -154.62 REMARK 500 3 LYS A 3 49.21 -109.11 REMARK 500 3 PHE A 24 40.14 162.29 REMARK 500 3 LYS A 34 -7.30 -50.62 REMARK 500 3 ASP A 35 -69.26 -94.61 REMARK 500 REMARK 500 THIS ENTRY HAS 483 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7269 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT LIST DBREF 2JNK A 2 132 UNP P26831 NAGH_CLOPE 1498 1628 SEQADV 2JNK MET A 1 UNP P26831 EXPRESSION TAG SEQADV 2JNK LEU A 133 UNP P26831 EXPRESSION TAG SEQADV 2JNK GLU A 134 UNP P26831 EXPRESSION TAG SEQADV 2JNK HIS A 135 UNP P26831 EXPRESSION TAG SEQADV 2JNK HIS A 136 UNP P26831 EXPRESSION TAG SEQADV 2JNK HIS A 137 UNP P26831 EXPRESSION TAG SEQADV 2JNK HIS A 138 UNP P26831 EXPRESSION TAG SEQADV 2JNK HIS A 139 UNP P26831 EXPRESSION TAG SEQADV 2JNK HIS A 140 UNP P26831 EXPRESSION TAG SEQRES 1 A 140 MET ASP LYS THR ASN LEU GLY GLU LEU ILE ASN GLN GLY SEQRES 2 A 140 LYS SER LEU LEU ASP GLU SER VAL GLU GLY PHE ASN VAL SEQRES 3 A 140 GLY GLU TYR HIS LYS GLY ALA LYS ASP GLY LEU THR VAL SEQRES 4 A 140 GLU ILE ASN LYS ALA GLU GLU VAL PHE ASN LYS GLU ASP SEQRES 5 A 140 ALA THR GLU GLU GLU ILE ASN LEU ALA LYS GLU SER LEU SEQRES 6 A 140 GLU GLY ALA ILE ALA ARG PHE ASN SER LEU LEU ILE GLU SEQRES 7 A 140 GLU SER THR GLY ASP PHE ASN GLY ASN GLY LYS ILE ASP SEQRES 8 A 140 ILE GLY ASP LEU ALA MET VAL SER LYS ASN ILE GLY SER SEQRES 9 A 140 THR THR ASN THR SER LEU ASP LEU ASN LYS ASP GLY SER SEQRES 10 A 140 ILE ASP GLU TYR GLU ILE SER PHE ILE ASN HIS ARG ILE SEQRES 11 A 140 LEU ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 LYS A 3 SER A 20 1 18 HELIX 2 2 ASP A 35 ASN A 49 1 15 HELIX 3 3 THR A 54 SER A 74 1 21 HELIX 4 4 MET A 97 ILE A 102 1 6 HELIX 5 5 ASP A 119 SER A 124 1 6 HELIX 6 6 ILE A 126 ASN A 132 1 7 SHEET 1 A 2 VAL A 21 GLU A 22 0 SHEET 2 A 2 GLU A 28 TYR A 29 1 O TYR A 29 N VAL A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 156 0 0 6 2 0 0 6 0 0 0 11 END