HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-06 2JN4 TITLE SOLUTION NMR STRUCTURE OF PROTEIN RP4601 FROM RHODOPSEUDOMONAS TITLE 2 PALUSTRIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RPT2; TITLE 3 ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET RP4601. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN FIXU, NIFT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: FIXU/ NIFT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC KEYWDS HYPOTHETICAL PROTEIN, RHODOPSEUDOMONAS PALUSTRIS, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,S.SRISAILAM,A.YEE,M.D.KARRA,J.A.LUKIN,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 05-FEB-20 2JN4 1 REMARK SEQADV REVDAT 3 18-JAN-12 2JN4 1 REMARK VERSN REVDAT 2 24-FEB-09 2JN4 1 VERSN REVDAT 1 23-JAN-07 2JN4 0 JRNL AUTH A.LEMAK,S.SRISAILAM,A.YEE,M.D.KARRA,J.A.LUKIN,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF A HYPOTHETICAL PROTEIN RP4601 FROM JRNL TITL 2 RHODOPSEUDOMONAS PALUSTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JN4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000100040. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 400MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C, U-100% 15N] REMARK 210 RP4601, 10MM NA ACETATE, 400MM REMARK 210 NACL, 10MM ZNSO4, 10MM DTT, 0.01 REMARK 210 NAN3, 1MM BENZAMIDINE, 90% H2O, REMARK 210 10% D2O; 0.7 MM [U-100% 13C, U- REMARK 210 100% 15N] RP4601, 10MM NA REMARK 210 ACETATE, 400MM NACL, 10MM ZNSO4, REMARK 210 10MM DTT, 0.01 NAN3, 1MM REMARK 210 BENZAMIDINE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D CBCA(CO)NH; 3D H(CCO) REMARK 210 NH; HBHACBCACONH 4D PROJECTION REMARK 210 RECONSTRUCTION; HCCCCONH TOCSY REMARK 210 4D PROJECTION RECONSTRUCTION; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HN(COCA)CB; 3D HCCH-TOCSY (H- REMARK 210 TOCSY); HCCH-TOCSY (C-TOCSY) REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.6, SPARKY 3.106, CYANA REMARK 210 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 31 -31.49 -38.39 REMARK 500 1 LEU A 33 -71.74 176.65 REMARK 500 1 PRO A 49 -4.65 -59.38 REMARK 500 1 ALA A 50 89.77 71.07 REMARK 500 1 ALA A 52 79.00 56.53 REMARK 500 2 LEU A 33 -76.37 176.82 REMARK 500 2 MET A 51 -71.36 -98.75 REMARK 500 3 LYS A 19 15.39 -144.38 REMARK 500 3 ASP A 20 29.98 42.03 REMARK 500 3 LEU A 33 -71.71 -175.25 REMARK 500 4 ALA A 9 -93.79 54.85 REMARK 500 4 LEU A 33 -72.46 -178.43 REMARK 500 4 ALA A 52 95.08 -163.21 REMARK 500 4 THR A 55 120.82 -28.51 REMARK 500 5 LEU A 33 -67.25 172.42 REMARK 500 6 ALA A 9 107.17 -49.54 REMARK 500 6 THR A 10 -41.02 67.79 REMARK 500 6 LEU A 33 -70.48 170.20 REMARK 500 6 MET A 51 -74.37 -87.99 REMARK 500 7 ALA A 9 -74.11 -47.21 REMARK 500 7 ALA A 32 -71.83 -68.11 REMARK 500 7 LEU A 33 -63.23 -179.45 REMARK 500 7 ASP A 54 79.47 -116.37 REMARK 500 7 ARG A 64 105.69 -162.21 REMARK 500 8 THR A 10 76.27 -110.27 REMARK 500 8 LEU A 33 -69.21 174.57 REMARK 500 8 ALA A 50 80.44 -64.69 REMARK 500 9 ALA A 9 104.59 -56.27 REMARK 500 9 THR A 10 -52.96 67.75 REMARK 500 9 LEU A 33 -72.63 178.70 REMARK 500 9 MET A 51 -152.39 -135.37 REMARK 500 10 ALA A 9 107.26 -47.65 REMARK 500 10 THR A 10 -41.38 66.92 REMARK 500 10 LEU A 33 -75.55 -177.94 REMARK 500 10 MET A 51 -63.72 -95.08 REMARK 500 10 THR A 55 88.38 41.63 REMARK 500 10 PRO A 58 94.70 -67.67 REMARK 500 11 THR A 10 -32.66 -146.75 REMARK 500 11 ALA A 17 -70.58 -57.49 REMARK 500 11 LEU A 33 -67.89 -176.05 REMARK 500 11 ALA A 50 90.49 -69.77 REMARK 500 12 ALA A 9 -91.03 -170.75 REMARK 500 12 LEU A 33 -68.46 178.89 REMARK 500 12 MET A 51 -79.60 -113.00 REMARK 500 12 PRO A 58 95.71 -68.35 REMARK 500 13 THR A 8 131.35 -177.41 REMARK 500 13 LEU A 33 -71.71 -178.39 REMARK 500 13 PRO A 49 71.22 -65.34 REMARK 500 13 ALA A 50 89.05 36.90 REMARK 500 13 MET A 51 -169.02 -129.62 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RPT2 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15085 RELATED DB: BMRB DBREF 2JN4 A 1 66 UNP Q6N0Y6 Q6N0Y6_RHOPA 1 66 SEQADV 2JN4 MET A -20 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 GLY A -19 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 SER A -18 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 SER A -17 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 HIS A -16 UNP Q6N0Y6 EXPRESSION TAG SEQADV 2JN4 HIS A -15 UNP Q6N0Y6 EXPRESSION TAG SEQADV 2JN4 HIS A -14 UNP Q6N0Y6 EXPRESSION TAG SEQADV 2JN4 HIS A -13 UNP Q6N0Y6 EXPRESSION TAG SEQADV 2JN4 HIS A -12 UNP Q6N0Y6 EXPRESSION TAG SEQADV 2JN4 HIS A -11 UNP Q6N0Y6 EXPRESSION TAG SEQADV 2JN4 SER A -10 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 SER A -9 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 GLY A -8 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 ARG A -7 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 GLU A -6 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 ASN A -5 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 LEU A -4 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 TYR A -3 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 PHE A -2 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 GLN A -1 UNP Q6N0Y6 CLONING ARTIFACT SEQADV 2JN4 GLY A 0 UNP Q6N0Y6 CLONING ARTIFACT SEQRES 1 A 87 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 87 ARG GLU ASN LEU TYR PHE GLN GLY MET LYS VAL MET ILE SEQRES 3 A 87 ARG LYS THR ALA THR GLY HIS SER ALA TYR VAL ALA LYS SEQRES 4 A 87 LYS ASP LEU GLU GLU LEU ILE VAL GLU MET GLU ASN PRO SEQRES 5 A 87 ALA LEU TRP GLY GLY LYS VAL THR LEU ALA ASN GLY TRP SEQRES 6 A 87 GLN LEU GLU LEU PRO ALA MET ALA ALA ASP THR PRO LEU SEQRES 7 A 87 PRO ILE THR VAL GLU ALA ARG LYS LEU SHEET 1 A 6 GLN A 45 GLU A 47 0 SHEET 2 A 6 LYS A 37 LEU A 40 -1 N VAL A 38 O LEU A 46 SHEET 3 A 6 LEU A 21 MET A 28 -1 N GLU A 27 O THR A 39 SHEET 4 A 6 HIS A 12 VAL A 16 -1 N VAL A 16 O LEU A 21 SHEET 5 A 6 VAL A 3 LYS A 7 -1 N MET A 4 O TYR A 15 SHEET 6 A 6 ILE A 59 VAL A 61 -1 O VAL A 61 N VAL A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 192 0 0 0 6 0 0 6 0 0 0 7 END