HEADER PSEUDOMONAS SP.LDC-5 19-AUG-06 2J3B TITLE THEORTICAL MODEL OF UV MUTANT OF (UV-B)PSEUDOMONAS SP.LDC-5 TITLE 2 PHAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAC2 POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA BETA HYDROLASE FOLD BINDING DOMAIN; COMPND 5 EC: 5.3.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. LDC-5; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS; SOURCE 4 STRAIN: LDC-5; SOURCE 5 VARIANT: FIELD ISOLATE; SOURCE 6 OTHER_DETAILS: MADURAI COLLECTION OF PHA ACCMULATING SOURCE 7 PSEUDOMONAS STRAINS KEYWDS PSEUDOMONAS SP.LDC-5, PHAC1 GENE, PHA SYNTHASE, PHA KEYWDS 2 ACCUMULATING PSEUDOMONAS STRAINS, HOMOLOGY MODELING UV KEYWDS 3 MUTAGENESIS, ENHANCED PRODUCTION OF PHA EXPDTA THEORETICAL MODEL AUTHOR K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI REVDAT 1 19-OCT-06 2J3B 0 JRNL AUTH K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI JRNL TITL THEORTICAL MODEL OF UV MUTANT OF (UV-B) JRNL TITL 2 PSEUDOMONAS SP. LDC-5 PHAC1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J3B COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS DEPOSITED AT EBI ON 19-AUG-2006. REMARK 100 THE EBI ID CODE IS EBI-29772. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS BUILT USING THE STRUCTURE OF ALPHA BETA REMARK 220 HYDROLASE FOLD OF GASTRIC LIPASE. THIS THEORETICAL MODEL REMARK 220 ENTRY WAS NOT ANNOTATED AND NOT VALIDATED BY THE WWPDB REMARK 220 STAFF AND THEREFORE MAY NOT CONFORM TO THE PDB FORMAT. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CD2 TYR A 39 CG2 THR A 70 0.81 REMARK 500 O LEU A 74 CB ALA A 80 1.43 REMARK 500 CE2 TYR A 39 CG2 THR A 70 1.54 REMARK 500 O ALA A 80 N LEU A 84 1.88 REMARK 500 CG TYR A 39 CG2 THR A 70 1.89 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 5 CD PRO A 5 N 0.103 REMARK 500 HIS A 10 CG HIS A 10 CD2 0.102 REMARK 500 HIS A 31 CG HIS A 31 CD2 0.102 REMARK 500 HIS A 77 CG HIS A 77 CD2 0.101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 O - C - N ANGL. DEV. =-75.0 DEGREES REMARK 500 PRO A 59 C - N - CD ANGL. DEV. =-47.7 DEGREES SEQRES 1 A 91 PRO PRO THR LYS LEU ARG HIS ASN MET LEU LYS SER GLY SEQRES 2 A 91 LEU GLN VAL PHE MET VAL SER TRP ARG ASN PRO ASP PRO SEQRES 3 A 91 ARG HIS ARG GLU TRP GLY LEU SER SER TYR VAL GLN ALA SEQRES 4 A 91 LEU GLU GLU ALA LEU ASN ALA CYS ARG SER ILE SER GLY SEQRES 5 A 91 ASN ARG ASP PRO ASN LEU MET GLY ALA CYS ALA GLY GLY SEQRES 6 A 91 LEU THR MET ALA ALA LEU GLN GLY HIS LEU GLN ALA LYS SEQRES 7 A 91 LYS GLN LEU ARG ARG VAL ARG SER ALA THR TYR LEU VAL HELIX 1 1 LYS A 7 SER A 15 1 9 HELIX 2 2 GLY A 35 SER A 37 5 3 HELIX 3 3 SER A 38 GLY A 55 1 18 HELIX 4 4 CYS A 65 HIS A 77 1 13 HELIX 5 5 HIS A 77 ARG A 85 1 9 SHEET 1 AA 2 ASN A 60 ALA A 64 0 SHEET 2 AA 2 SER A 89 LEU A 93 1 O SER A 89 N LEU A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 75 0 0 5 2 0 0 6 0 0 0 7 END