HEADER PSEUDOMONAS SP.LDC-25 17-AUG-06 2J2N TITLE THEORTICAL MODEL OF PHAC1 PROTEIN OF INDIGENOUS PSEUDOMONAS TITLE 2 SP.LDC-25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHA SYNTHASE OF LDC 25; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHA SYNTHASE; COMPND 5 EC: 5.3.1.16 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.LDC 25; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS; SOURCE 4 STRAIN: LDC 25; SOURCE 5 VARIANT: FIELD ISOLATE; SOURCE 6 OTHER_DETAILS: MADURAI COLLECTION OF PHA ACCUMULATING SOURCE 7 PSEUDOMONAS STRAINS. KEYWDS PSEUDOMONAS SP.LDC-25, PHAC1 GENE, PHA SYNTHASE, PHA KEYWDS 2 ACCUMULATING PSEUDOMONAS STRAINS, HOMOLOGY MODELING EXPDTA THEORETICAL MODEL AUTHOR K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI REVDAT 1 19-OCT-06 2J2N 0 JRNL AUTH K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI JRNL TITL THEORTICAL MODEL OF PHAC1 PROTEIN OF INDIGENOUS JRNL TITL 2 PSEUDOMONAS SP.LDC-25 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J2N COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS DEPOSITED AT EBI ON 17-AUG-2006. REMARK 100 THE EBI ID CODE IS EBI-29730. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS BUILT USING THE STRUCTURE OF ALPHA BETA REMARK 220 HYDROLASE FOLD OF GASTRIC LIPASE. THIS THEORETICAL MODEL REMARK 220 ENTRY WAS NOT ANNOTATED AND NOT VALIDATED BY THE WWPDB REMARK 220 STAFF AND THEREFORE MAY NOT CONFORM TO THE PDB FORMAT. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O THR A 270 CD GLN A 276 0.61 REMARK 500 N ASN A 191 CE3 TRP A 195 0.88 REMARK 500 O THR A 270 NE2 GLN A 276 1.13 REMARK 500 CD2 LEU A 86 CE2 TYR A 89 1.14 REMARK 500 CZ PHE A 185 O LEU A 230 1.15 REMARK 500 O VAL A 145 CD2 LEU A 239 1.30 REMARK 500 C ALA A 114 CD1 LEU A 142 1.34 REMARK 500 CB ASN A 191 CD2 TRP A 195 1.37 REMARK 500 CE2 PHE A 185 O LEU A 230 1.38 REMARK 500 OD2 ASP A 289 OG1 THR A 292 1.38 REMARK 500 O THR A 270 CG GLN A 276 1.40 REMARK 500 CA ASN A 191 CE3 TRP A 195 1.43 REMARK 500 CB ASN A 191 CE2 TRP A 195 1.43 REMARK 500 C THR A 270 CD GLN A 276 1.43 REMARK 500 CA ALA A 114 CD2 LEU A 142 1.48 REMARK 500 CA GLY A 243 CE1 PHE A 262 1.49 REMARK 500 O MET A 188 CB TRP A 195 1.52 REMARK 500 N CYS A 268 CG2 ILE A 272 1.54 REMARK 500 N ASN A 191 CD2 TRP A 195 1.61 REMARK 500 C THR A 270 CG GLN A 276 1.64 REMARK 500 O MET A 111 CD1 LEU A 139 1.68 REMARK 500 CG2 THR A 148 CB ASN A 237 1.69 REMARK 500 O ALA A 114 CD1 LEU A 142 1.70 REMARK 500 CD ARG A 189 CG2 VAL A 199 1.70 REMARK 500 CA ASN A 191 CD2 TRP A 195 1.70 REMARK 500 C VAL A 145 CD2 LEU A 239 1.71 REMARK 500 NE ARG A 189 CG2 VAL A 199 1.73 REMARK 500 O PRO A 242 CE2 PHE A 262 1.73 REMARK 500 O PRO A 242 CZ PHE A 262 1.73 REMARK 500 CG2 THR A 148 CA ASN A 237 1.74 REMARK 500 C PRO A 190 CE3 TRP A 195 1.75 REMARK 500 CB LEU A 239 CG GLU A 266 1.76 REMARK 500 O THR A 270 OE1 GLN A 276 1.78 REMARK 500 CA GLY A 286 O SER A 313 1.78 REMARK 500 CD2 LEU A 86 CD2 TYR A 89 1.79 REMARK 500 CG ARG A 189 CG2 VAL A 199 1.79 REMARK 500 OG1 THR A 236 CD PRO A 238 1.79 REMARK 500 N ALA A 114 CD1 LEU A 142 1.82 REMARK 500 CA ALA A 114 CD1 LEU A 142 1.82 REMARK 500 O PRO A 242 CD2 PHE A 262 1.82 REMARK 500 O PRO A 242 CE1 PHE A 262 1.82 REMARK 500 CA ALA A 114 CG LEU A 142 1.83 REMARK 500 CB MET A 111 CD1 LEU A 139 1.84 REMARK 500 N ALA A 114 CG LEU A 142 1.84 REMARK 500 O MET A 188 CG TRP A 195 1.84 REMARK 500 CG2 THR A 122 CB ASP A 273 1.85 REMARK 500 O ILE A 291 CD PRO A 293 1.85 REMARK 500 CA MET A 111 CD1 LEU A 139 1.86 REMARK 500 O ALA A 285 N SER A 313 1.86 REMARK 500 CB LEU A 239 CB GLU A 266 1.87 REMARK 500 O LEU A 156 OD1 ASP A 159 1.88 REMARK 500 CD1 LEU A 274 CD1 LEU A 303 1.89 REMARK 500 O CYS A 268 CG1 ILE A 272 1.90 REMARK 500 CE3 TRP A 84 CG2 THR A 88 1.91 REMARK 500 O PRO A 242 CD1 PHE A 262 1.92 REMARK 500 O PRO A 242 CG PHE A 262 1.93 REMARK 500 CA THR A 270 OE1 GLN A 276 1.93 REMARK 500 C MET A 111 CD1 LEU A 139 1.96 REMARK 500 CA CYS A 268 CG2 ILE A 272 1.98 REMARK 500 C THR A 270 OE1 GLN A 276 1.98 REMARK 500 N PRO A 271 CG GLN A 276 1.98 REMARK 500 O THR A 122 OD1 ASP A 273 1.99 REMARK 500 CB SER A 215 CE1 HIS A 290 2.04 REMARK 500 O MET A 188 CA TRP A 195 2.05 REMARK 500 CZ PHE A 185 C LEU A 230 2.10 REMARK 500 N GLY A 243 CE1 PHE A 262 2.11 REMARK 500 CB ASN A 191 CE3 TRP A 195 2.12 REMARK 500 N MET A 111 CD1 LEU A 139 2.13 REMARK 500 O ALA A 186 CG PRO A 190 2.13 REMARK 500 C GLY A 113 CG LEU A 142 2.14 REMARK 500 O SER A 179 N MET A 181 2.14 REMARK 500 CE1 PHE A 185 CB LEU A 230 2.14 REMARK 500 O PRO A 209 OG1 THR A 212 2.14 REMARK 500 CE2 PHE A 185 C LEU A 230 2.15 REMARK 500 N CYS A 115 CD1 LEU A 142 2.16 REMARK 500 CE1 PHE A 185 O LEU A 230 2.17 REMARK 500 CB ASN A 191 CG TRP A 195 2.17 REMARK 500 OE2 GLU A 266 OD2 ASP A 273 2.17 REMARK 500 C ALA A 114 CG LEU A 142 2.18 REMARK 500 CB ASN A 191 NE1 TRP A 195 2.18 REMARK 500 N ALA A 244 CZ PHE A 262 2.18 REMARK 500 CB SER A 215 NE2 HIS A 290 2.19 REMARK 500 O ASP A 273 CG2 VAL A 277 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 59 CD PRO A 59 N 0.117 REMARK 500 HIS A 76 CG HIS A 76 CD2 0.102 REMARK 500 LEU A 93 C LYS A 94 N 0.075 REMARK 500 HIS A 127 CG HIS A 127 CD2 0.101 REMARK 500 VAL A 143 C SER A 144 N 0.090 REMARK 500 GLU A 164 C ALA A 165 N 0.117 REMARK 500 HIS A 169 CG HIS A 169 CD2 0.102 REMARK 500 PRO A 190 CD PRO A 190 N 0.086 REMARK 500 TYR A 197 C LEU A 198 N 0.098 REMARK 500 HIS A 219 CG HIS A 219 CD2 0.101 REMARK 500 HIS A 220 CG HIS A 220 CD2 0.101 REMARK 500 HIS A 227 CG HIS A 227 CD2 0.101 REMARK 500 PRO A 238 CD PRO A 238 N 0.132 REMARK 500 PRO A 251 CD PRO A 251 N 0.101 REMARK 500 THR A 250 C PRO A 251 N -0.080 REMARK 500 PRO A 271 CD PRO A 271 N 0.087 REMARK 500 HIS A 290 CG HIS A 290 CD2 0.102 REMARK 500 HIS A 302 CG HIS A 302 CD2 0.102 REMARK 500 HIS A 317 CG HIS A 317 CD2 0.102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 75 O - C - N ANGL. DEV. =-114.4 DEGREES REMARK 500 HIS A 127 O - C - N ANGL. DEV. =-29.8 DEGREES REMARK 500 ASN A 137 O - C - N ANGL. DEV. =-43.8 DEGREES REMARK 500 ASN A 191 O - C - N ANGL. DEV. =-46.4 DEGREES REMARK 500 VAL A 264 O - C - N ANGL. DEV. =-19.3 DEGREES REMARK 500 VAL A 311 O - C - N ANGL. DEV. =-19.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 171 -146.87 129.43 REMARK 500 THR A 217 58.28 123.23 SEQRES 1 A 267 ARG ARG ALA VAL ALA ARG LEU PRO ARG GLY ASP VAL VAL SEQRES 2 A 267 GLY GLY ALA GLY THR TYR VAL ARG ARG LEU ALA HIS PRO SEQRES 3 A 267 ILE GLN ALA GLN ARG GLU TRP GLY LEU SER THR TYR ILE SEQRES 4 A 267 ASP ALA LEU LYS GLU ALA VAL ASP ALA VAL LEU ALA ILE SEQRES 5 A 267 THR GLY SER LYS ASP LEU ASN MET LEU GLY ALA CYS SER SEQRES 6 A 267 GLY GLY ILE THR CYS THR ALA LEU VAL GLY HIS TYR ALA SEQRES 7 A 267 ALA VAL GLY GLU ASN LYS VAL ASN ALA LEU THR LEU LEU SEQRES 8 A 267 VAL SER VAL LEU ASP THR THR LEU ASP THR GLN VAL ALA SEQRES 9 A 267 LEU PHE VAL ASP GLU GLN THR LEU GLU ALA ALA LYS ARG SEQRES 10 A 267 HIS SER TYR GLN ALA GLY VAL LEU GLU GLY SER GLU MET SEQRES 11 A 267 ALA LYS VAL PHE ALA TRP MET ARG PRO ASN ASP LEU ILE SEQRES 12 A 267 TRP ASN TYR LEU VAL ASN ASN TYR LEU LEU GLY ASN GLU SEQRES 13 A 267 PRO PRO CYS SER THR SER CYS SER GLY THR ARG HIS HIS SEQRES 14 A 267 ALA PRO ALA SER ARG VAL HIS GLY ASP LEU ILE GLU MET SEQRES 15 A 267 PHE LYS THR ASN PRO LEU THR ARG PRO GLY ALA LEU GLU SEQRES 16 A 267 VAL CYS GLY THR PRO ILE ASP LEU LYS GLN VAL GLN CYS SEQRES 17 A 267 ASP ILE PHE SER VAL LEU GLU VAL CYS GLY THR PRO ILE SEQRES 18 A 267 ASP LEU LYS GLN VAL GLN CYS ASP ILE PHE SER VAL ALA SEQRES 19 A 267 GLY THR ALA ASP HIS ILE THR PRO TRP GLN SER CYS TYR SEQRES 20 A 267 ARG SER ALA HIS LEU PHE GLY GLY LYS ILE GLU PHE VAL SEQRES 21 A 267 LEU SER ASN SER GLY HIS ILE HELIX 1 1 ARG A 57 GLY A 65 1 9 HELIX 2 2 THR A 88 GLY A 105 1 18 HELIX 3 3 CYS A 115 HIS A 127 1 13 HELIX 4 4 TYR A 128 GLU A 133 1 6 HELIX 5 5 THR A 152 ASP A 159 5 8 HELIX 6 6 ALA A 165 SER A 170 1 6 HELIX 7 7 GLU A 180 PHE A 185 1 6 HELIX 8 8 ASN A 191 LEU A 204 1 14 HELIX 9 9 PRO A 209 SER A 211 5 3 HELIX 10 10 THR A 212 THR A 217 1 6 HELIX 11 11 ARG A 218 ALA A 221 5 4 HELIX 12 12 PRO A 222 SER A 224 5 3 HELIX 13 13 ARG A 225 LEU A 230 1 6 HELIX 14 14 ILE A 231 ASN A 237 1 7 HELIX 15 15 THR A 250 GLN A 258 1 9 HELIX 16 16 ILE A 272 VAL A 277 1 6 HELIX 17 17 PRO A 293 HIS A 302 1 10 SHEET 1 AA 3 LEU A 139 THR A 140 0 SHEET 2 AA 3 ILE A 281 ALA A 285 1 N PHE A 282 O LEU A 139 SHEET 3 AA 3 LYS A 307 LEU A 312 1 N ILE A 308 O ILE A 281 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 186 0 0 17 3 0 0 6 0 0 0 21 END