HEADER TRANSFERASE 16-AUG-06 2J26 TITLE THEORETICAL MODEL OF DEPOLYMERASE GENE OF (PHAZ) TITLE 2 PSEUDOMONAS SP.LDC-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPOLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHA DEPOLYMERASE, RESIDUES 132-168; COMPND 5 EC: 3.1.1.75 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. LDC-5; SOURCE 3 STRAIN: LDC-5; SOURCE 4 OTHER_DETAILS: MADURAI COLLECTION OF PSEUDOMONAS ISOLATES KEYWDS DEPOLYMERASE (PHAZ), PSEUDOMONAS SP.LDC-5, HOMOLOGY KEYWDS 2 MODELLING, PHA OPERON, TRANSFERASE EXPDTA THEORETICAL MODEL AUTHOR K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI REVDAT 1 17-AUG-06 2J26 0 JRNL AUTH K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI JRNL TITL THEORTICAL MODEL OF DEPOLYMERASE GENE OF (PHAZ) JRNL TITL 2 PSEUDOMONAS SP.LDC-5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J26 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-AUG-2006. REMARK 100 THE EBI ID CODE IS EBI-29712. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS BUILT USING THE ALPHA BETA HYDROLASE REMARK 220 FOLD OF LIPASE REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O LEU A 12 N ASN A 14 2.14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 4 CD PRO A 4 N 0.129 REMARK 500 HIS A 27 CG HIS A 27 CD2 0.102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 13 O - C - N ANGL. DEV. =-23.9 DEGREES REMARK 500 PRO A 23 C - N - CD ANGL. DEV. =-23.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 28 173.34 87.20 DBREF 2J26 A 4 40 UNP Q5D4Y9 Q5D4Y9_9PSED 132 168 SEQRES 1 A 37 PRO TYR ILE PHE ARG THR VAL GLN LEU ASP ASN GLN SER SEQRES 2 A 37 ILE ARG THR ALA VAL ARG PRO GLY LYS PRO HIS LEU THR SEQRES 3 A 37 PRO LEU LEU ILE PHE ASN GLY ILE GLY ALA ASN CISPEP 1 ILE A 37 GLY A 38 0 -0.59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 80 0 0 0 0 0 0 6 0 0 0 3 END