HEADER DNA BINDING PROTEIN/DNA 19-OCT-06 2ITL TITLE THE ORIGIN BINDING DOMAIN OF THE SV40 LARGE T ANTIGEN BOUND TO THE TITLE 2 FUNCTIONAL PEN PALINDROME DNA (23 BP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 24-NT PEN ELEMENT OF THE SV40 DNA ORIGIN; COMPND 3 CHAIN: W; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 24-NT PEN ELEMENT OF THE SV40 DNA ORIGIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LARGE T ANTIGEN; COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: ORIGIN BINDING DOMAIN (RESIDUES 131-259); COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 40; SOURCE 7 ORGANISM_TAXID: 10633; SOURCE 8 STRAIN: 776; SOURCE 9 GENE: LARGE T ANTIGEN; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.BOCHKAREVA,A.SEITOVA,A.BOCHKAREV REVDAT 5 24-JAN-18 2ITL 1 AUTHOR REVDAT 4 18-OCT-17 2ITL 1 REMARK REVDAT 3 24-FEB-09 2ITL 1 VERSN REVDAT 2 13-FEB-07 2ITL 1 JRNL REVDAT 1 12-DEC-06 2ITL 0 JRNL AUTH E.BOCHKAREVA,D.MARTYNOWSKI,A.SEITOVA,A.BOCHKAREV JRNL TITL STRUCTURE OF THE ORIGIN-BINDING DOMAIN OF SIMIAN VIRUS 40 JRNL TITL 2 LARGE T ANTIGEN BOUND TO DNA JRNL REF EMBO J. V. 25 5961 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 17139255 JRNL DOI 10.1038/SJ.EMBOJ.7601452 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1921 REMARK 3 NUCLEIC ACID ATOMS : 979 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2521 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3507 ; 1.460 ; 2.206 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 5.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;30.176 ;22.644 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;15.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1713 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1039 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1691 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 230 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.360 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 1.263 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1911 ; 2.045 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 2.774 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1596 ; 3.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2864 ; 3.012 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 322 ; 5.112 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2409 ; 4.055 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ITL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2IPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM DI-AMMONIUM HYDROGEN CITRATE, REMARK 280 20% PEG 3000, AND 10 MM MGCL2, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.59800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.04800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.59800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.04800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DSDNA FRAGMENT BOUND BY FOUR REMARK 300 OBDS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: W, C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.78463 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.08758 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 MET A 130 REMARK 465 LYS A 131 REMARK 465 VAL A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 254 REMARK 465 HIS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 PRO A 259 REMARK 465 GLY B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 MET B 130 REMARK 465 LYS B 131 REMARK 465 VAL B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 GLY B 250 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 LYS B 253 REMARK 465 GLU B 254 REMARK 465 HIS B 255 REMARK 465 ASP B 256 REMARK 465 PHE B 257 REMARK 465 ASN B 258 REMARK 465 PRO B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH W 98 O HOH W 109 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG W 29 C5 DG W 29 N7 0.046 REMARK 500 DG C 29 C5 DG C 29 N7 0.046 REMARK 500 DC C 30 O3' DC C 31 P 0.228 REMARK 500 DC C 31 O3' DG C 32 P 0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA W 19 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA W 19 C5 - C6 - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DA W 19 C4 - C5 - N7 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA W 19 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA W 19 N9 - C4 - C5 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA W 19 N3 - C4 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA W 19 N1 - C6 - N6 ANGL. DEV. = 6.1 DEGREES REMARK 500 DA W 19 C5 - C6 - N6 ANGL. DEV. = -11.8 DEGREES REMARK 500 DG W 20 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG W 22 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG W 22 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG W 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG W 23 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG W 28 O4' - C1' - N9 ANGL. DEV. = 9.4 DEGREES REMARK 500 DG W 28 C8 - N9 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG W 29 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG W 29 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC W 30 N3 - C4 - N4 ANGL. DEV. = 5.7 DEGREES REMARK 500 DC W 30 C5 - C4 - N4 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG W 31 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG W 32 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG W 32 O4' - C1' - C2' ANGL. DEV. = 4.4 DEGREES REMARK 500 DG W 32 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG W 32 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC W 33 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC W 33 C3' - C2' - C1' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC W 33 O4' - C1' - C2' ANGL. DEV. = 5.9 DEGREES REMARK 500 DC W 34 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC W 34 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC W 34 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC W 34 C5 - C4 - N4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT W 35 N3 - C4 - O4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT W 35 C5 - C4 - O4 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC W 36 O4' - C1' - N1 ANGL. DEV. = -7.0 DEGREES REMARK 500 DG W 37 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG W 38 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT W 41 C5 - C4 - O4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC W 42 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 19 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA C 19 C5 - C6 - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DA C 19 C4 - C5 - N7 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA C 19 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 19 N9 - C4 - C5 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA C 19 N3 - C4 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA C 19 N1 - C6 - N6 ANGL. DEV. = 6.1 DEGREES REMARK 500 DA C 19 C5 - C6 - N6 ANGL. DEV. = -11.8 DEGREES REMARK 500 DG C 20 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG C 22 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG C 22 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG C 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 77 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 192 -168.99 -122.35 REMARK 500 CYS A 216 53.46 -143.97 REMARK 500 PHE A 218 -1.99 82.17 REMARK 500 HIS B 148 43.51 -109.09 REMARK 500 CYS B 216 45.03 -142.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPR RELATED DB: PDB REMARK 900 RELATED ID: 2ITJ RELATED DB: PDB REMARK 900 RELATED ID: 2NL8 RELATED DB: PDB DBREF 2ITL A 131 259 UNP P03070 TALA_SV40 131 259 DBREF 2ITL B 131 259 UNP P03070 TALA_SV40 131 259 DBREF 2ITL W 19 42 PDB 2ITL 2ITL 19 42 DBREF 2ITL C 19 42 PDB 2ITL 2ITL 19 42 SEQADV 2ITL GLY A 127 UNP P03070 CLONING ARTIFACT SEQADV 2ITL SER A 128 UNP P03070 CLONING ARTIFACT SEQADV 2ITL HIS A 129 UNP P03070 CLONING ARTIFACT SEQADV 2ITL MET A 130 UNP P03070 CLONING ARTIFACT SEQADV 2ITL GLY B 127 UNP P03070 CLONING ARTIFACT SEQADV 2ITL SER B 128 UNP P03070 CLONING ARTIFACT SEQADV 2ITL HIS B 129 UNP P03070 CLONING ARTIFACT SEQADV 2ITL MET B 130 UNP P03070 CLONING ARTIFACT SEQRES 1 W 24 DA DG DA DG DG DC DC DG DA DG DG DC DG SEQRES 2 W 24 DG DC DC DT DC DG DG DC DC DT DC SEQRES 1 C 24 DA DG DA DG DG DC DC DG DA DG DG DC DC SEQRES 2 C 24 DG DC DC DT DC DG DG DC DC DT DC SEQRES 1 A 133 GLY SER HIS MET LYS VAL GLU ASP PRO LYS ASP PHE PRO SEQRES 2 A 133 SER GLU LEU LEU SER PHE LEU SER HIS ALA VAL PHE SER SEQRES 3 A 133 ASN ARG THR LEU ALA CYS PHE ALA ILE TYR THR THR LYS SEQRES 4 A 133 GLU LYS ALA ALA LEU LEU TYR LYS LYS ILE MET GLU LYS SEQRES 5 A 133 TYR SER VAL THR PHE ILE SER ARG HIS ASN SER TYR ASN SEQRES 6 A 133 HIS ASN ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG SEQRES 7 A 133 VAL SER ALA ILE ASN ASN TYR ALA GLN LYS LEU CYS THR SEQRES 8 A 133 PHE SER PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR SEQRES 9 A 133 LEU MET TYR SER ALA LEU THR ARG ASP PRO PHE SER VAL SEQRES 10 A 133 ILE GLU GLU SER LEU PRO GLY GLY LEU LYS GLU HIS ASP SEQRES 11 A 133 PHE ASN PRO SEQRES 1 B 133 GLY SER HIS MET LYS VAL GLU ASP PRO LYS ASP PHE PRO SEQRES 2 B 133 SER GLU LEU LEU SER PHE LEU SER HIS ALA VAL PHE SER SEQRES 3 B 133 ASN ARG THR LEU ALA CYS PHE ALA ILE TYR THR THR LYS SEQRES 4 B 133 GLU LYS ALA ALA LEU LEU TYR LYS LYS ILE MET GLU LYS SEQRES 5 B 133 TYR SER VAL THR PHE ILE SER ARG HIS ASN SER TYR ASN SEQRES 6 B 133 HIS ASN ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG SEQRES 7 B 133 VAL SER ALA ILE ASN ASN TYR ALA GLN LYS LEU CYS THR SEQRES 8 B 133 PHE SER PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR SEQRES 9 B 133 LEU MET TYR SER ALA LEU THR ARG ASP PRO PHE SER VAL SEQRES 10 B 133 ILE GLU GLU SER LEU PRO GLY GLY LEU LYS GLU HIS ASP SEQRES 11 B 133 PHE ASN PRO FORMUL 5 HOH *307(H2 O) HELIX 1 1 PRO A 139 LEU A 146 5 8 HELIX 2 2 THR A 164 TYR A 179 1 16 HELIX 3 3 ARG A 204 LEU A 215 1 12 HELIX 4 4 LYS A 228 ARG A 238 1 11 HELIX 5 5 THR B 164 TYR B 179 1 16 HELIX 6 6 ARG B 204 LYS B 214 1 11 HELIX 7 7 LYS B 228 LEU B 236 1 9 SHEET 1 A 5 LEU A 221 GLY A 225 0 SHEET 2 A 5 LEU A 156 THR A 163 -1 N TYR A 162 O ILE A 222 SHEET 3 A 5 HIS A 192 HIS A 203 -1 O ASN A 193 N THR A 163 SHEET 4 A 5 PHE A 183 SER A 189 -1 N SER A 185 O PHE A 196 SHEET 5 A 5 SER A 242 GLU A 246 -1 O ILE A 244 N ARG A 186 SHEET 1 B 5 LEU B 221 GLY B 225 0 SHEET 2 B 5 LEU B 156 THR B 163 -1 N ALA B 160 O LYS B 224 SHEET 3 B 5 HIS B 192 HIS B 203 -1 O HIS B 203 N LEU B 156 SHEET 4 B 5 PHE B 183 SER B 189 -1 N HIS B 187 O ILE B 194 SHEET 5 B 5 SER B 242 GLU B 246 -1 O SER B 242 N ASN B 188 CISPEP 1 ASP A 239 PRO A 240 0 7.77 CISPEP 2 ASP B 239 PRO B 240 0 -2.14 CRYST1 83.196 64.096 79.177 90.00 120.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012020 0.000000 0.007134 0.00000 SCALE2 0.000000 0.015602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014687 0.00000 MASTER 415 0 0 7 10 0 0 6 0 0 0 26 END