HEADER HYDROLASE 30-AUG-06 2I7A TITLE DOMAIN IV OF HUMAN CALPAIN 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALPAIN 13; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 515-669; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CAPN13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS CALPAIN, CALCIUM-DEPENDENT CYTOPLASMIC CYSTEINE PROTEINASES, PAPAIN- KEYWDS 2 LIKE, EF-HAND, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,K.NG,T.L.DAVIS,R.RAVULAPALLI,C.BUTLER-COLE,P.J.FINERTY AUTHOR 2 JR.,E.M.NEWMAN,J.WEIGELT,M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 24-JAN-18 2I7A 1 AUTHOR REVDAT 4 18-OCT-17 2I7A 1 REMARK REVDAT 3 13-JUL-11 2I7A 1 VERSN REVDAT 2 24-FEB-09 2I7A 1 VERSN REVDAT 1 12-SEP-06 2I7A 0 JRNL AUTH J.R.WALKER,K.NG,T.L.DAVIS,R.RAVULAPALLI,C.BUTLER-COLE, JRNL AUTH 2 P.J.FINERTY JR.,E.M.NEWMAN,J.WEIGELT,M.SUNDSTROM, JRNL AUTH 3 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL STRUCTURE OF HUMAN CALPAIN 13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.039 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1325 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1788 ; 1.496 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 4.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;29.486 ;23.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;12.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.322 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 958 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 616 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 918 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 96 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.063 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 813 ; 2.104 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1270 ; 2.668 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 581 ; 3.654 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 518 ; 4.868 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 507 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9760 21.9110 -14.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0358 REMARK 3 T33: -0.0084 T12: 0.0850 REMARK 3 T13: -0.0323 T23: -0.1317 REMARK 3 L TENSOR REMARK 3 L11: 5.4403 L22: 5.7797 REMARK 3 L33: 2.3780 L12: -1.6526 REMARK 3 L13: -1.2667 L23: -0.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: 0.8913 S13: -0.7209 REMARK 3 S21: -0.7353 S22: -0.4121 S23: 0.0656 REMARK 3 S31: 0.1062 S32: -0.0096 S33: 0.1692 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 528 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4310 17.4190 -1.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: -0.1439 REMARK 3 T33: 0.0979 T12: -0.0119 REMARK 3 T13: 0.0649 T23: 0.1002 REMARK 3 L TENSOR REMARK 3 L11: 18.7642 L22: 8.8470 REMARK 3 L33: 21.8470 L12: -12.1373 REMARK 3 L13: -10.7673 L23: 10.9155 REMARK 3 S TENSOR REMARK 3 S11: -1.1780 S12: -1.2188 S13: -1.6073 REMARK 3 S21: 1.2417 S22: 0.0808 S23: 1.3076 REMARK 3 S31: 1.6252 S32: 0.2752 S33: 1.0972 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 538 A 552 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3260 31.0650 -7.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0166 REMARK 3 T33: -0.0365 T12: 0.0391 REMARK 3 T13: 0.0077 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 6.8005 L22: 5.3607 REMARK 3 L33: 4.3207 L12: -0.3386 REMARK 3 L13: -1.4152 L23: -1.6806 REMARK 3 S TENSOR REMARK 3 S11: 0.3114 S12: 0.1902 S13: 0.0253 REMARK 3 S21: -0.0680 S22: -0.1589 S23: 0.2891 REMARK 3 S31: -0.1953 S32: 0.1250 S33: -0.1526 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 553 A 564 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6630 31.0060 -17.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.1140 REMARK 3 T33: -0.1692 T12: 0.1198 REMARK 3 T13: 0.0536 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 12.2995 L22: 16.2026 REMARK 3 L33: 4.1398 L12: -9.9735 REMARK 3 L13: 2.4431 L23: -3.3291 REMARK 3 S TENSOR REMARK 3 S11: 0.6963 S12: 1.2534 S13: 0.0658 REMARK 3 S21: -1.0326 S22: -0.6977 S23: -0.0980 REMARK 3 S31: -0.2879 S32: 0.1134 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 565 A 572 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1320 24.9950 -6.9380 REMARK 3 T TENSOR REMARK 3 T11: -0.0315 T22: -0.0114 REMARK 3 T33: 0.0041 T12: 0.0239 REMARK 3 T13: 0.0332 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.9710 L22: 2.3180 REMARK 3 L33: 14.5876 L12: 0.1139 REMARK 3 L13: 1.1908 L23: 1.5287 REMARK 3 S TENSOR REMARK 3 S11: 0.1753 S12: 0.3027 S13: -0.0113 REMARK 3 S21: -0.2533 S22: 0.0611 S23: -0.2044 REMARK 3 S31: -0.1375 S32: 0.2038 S33: -0.2363 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 573 A 585 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7630 18.8000 5.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: -0.0686 REMARK 3 T33: -0.0060 T12: 0.0079 REMARK 3 T13: 0.0056 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 4.0278 L22: 6.0991 REMARK 3 L33: 12.6659 L12: -1.5340 REMARK 3 L13: -0.1938 L23: -2.6589 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.2643 S13: -0.5756 REMARK 3 S21: 0.1493 S22: 0.1743 S23: 0.3221 REMARK 3 S31: 0.9086 S32: -0.0669 S33: -0.1478 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 586 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0560 26.1040 11.1400 REMARK 3 T TENSOR REMARK 3 T11: -0.0327 T22: 0.0290 REMARK 3 T33: -0.0752 T12: 0.0435 REMARK 3 T13: -0.0202 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 7.0888 L22: 2.8306 REMARK 3 L33: 6.0425 L12: 0.4512 REMARK 3 L13: -2.3456 L23: -3.1671 REMARK 3 S TENSOR REMARK 3 S11: -0.2741 S12: -0.4508 S13: -0.1363 REMARK 3 S21: 0.2466 S22: 0.1189 S23: -0.1682 REMARK 3 S31: -0.1768 S32: -0.1829 S33: 0.1551 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 600 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8350 34.8590 2.8630 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: 0.0341 REMARK 3 T33: 0.0253 T12: 0.0117 REMARK 3 T13: -0.0317 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.9058 L22: 9.1422 REMARK 3 L33: 12.9053 L12: 0.3035 REMARK 3 L13: -1.3618 L23: 7.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.2873 S13: 0.0828 REMARK 3 S21: 0.0070 S22: 0.0778 S23: -0.6374 REMARK 3 S31: 0.0742 S32: 0.1554 S33: -0.1148 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 608 A 612 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7360 38.9880 14.7860 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: 0.0864 REMARK 3 T33: -0.0850 T12: 0.0136 REMARK 3 T13: -0.0581 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 22.6900 L22: 34.2749 REMARK 3 L33: 16.1350 L12: 5.6352 REMARK 3 L13: 4.3332 L23: 3.8605 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: -1.5120 S13: 0.4155 REMARK 3 S21: 0.9736 S22: 0.0787 S23: -0.1153 REMARK 3 S31: -0.2695 S32: -0.0418 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 613 A 634 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0730 28.7110 9.0790 REMARK 3 T TENSOR REMARK 3 T11: -0.0295 T22: 0.0354 REMARK 3 T33: -0.0349 T12: 0.0139 REMARK 3 T13: -0.0039 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 3.5781 L22: 3.9864 REMARK 3 L33: 4.0066 L12: -1.8214 REMARK 3 L13: -0.4274 L23: 2.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.3875 S13: -0.3847 REMARK 3 S21: 0.3932 S22: 0.0733 S23: 0.2593 REMARK 3 S31: 0.1790 S32: -0.2142 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 635 A 646 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1730 38.9910 -0.7070 REMARK 3 T TENSOR REMARK 3 T11: -0.0550 T22: -0.0167 REMARK 3 T33: 0.0193 T12: 0.0044 REMARK 3 T13: -0.0525 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.7947 L22: 11.6079 REMARK 3 L33: 4.1107 L12: -0.0805 REMARK 3 L13: -0.6280 L23: -2.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.2347 S12: 0.2074 S13: 0.4306 REMARK 3 S21: 0.1010 S22: 0.1556 S23: -0.5105 REMARK 3 S31: -0.0741 S32: 0.0500 S33: 0.0790 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 647 A 658 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5620 52.4010 -2.0050 REMARK 3 T TENSOR REMARK 3 T11: -0.1085 T22: -0.0904 REMARK 3 T33: 0.2478 T12: -0.0672 REMARK 3 T13: -0.0507 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 9.5595 L22: 4.7589 REMARK 3 L33: 3.1903 L12: -1.6667 REMARK 3 L13: 0.1663 L23: -2.6516 REMARK 3 S TENSOR REMARK 3 S11: -0.2688 S12: 0.1644 S13: 0.8855 REMARK 3 S21: 0.0384 S22: 0.1080 S23: -1.1592 REMARK 3 S31: -0.3438 S32: 0.0598 S33: 0.1608 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 659 A 669 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8770 47.0040 -5.8550 REMARK 3 T TENSOR REMARK 3 T11: -0.0832 T22: 0.0953 REMARK 3 T33: -0.0408 T12: -0.0322 REMARK 3 T13: -0.0286 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 2.9574 L22: 10.0675 REMARK 3 L33: 3.1600 L12: 0.8905 REMARK 3 L13: -0.4652 L23: 2.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.1192 S12: 0.3342 S13: 0.3491 REMARK 3 S21: -0.2115 S22: 0.0306 S23: -0.3048 REMARK 3 S31: -0.0190 S32: 0.1878 S33: 0.0886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 33.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KFU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4K, 0.2M NH4SO4, 0.1M NA-AC, 10 REMARK 280 MG/ML PROTEIN SOLUTION, CRYOPROTECTED WITH 25% GLYCEROL, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.61133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.80567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.80567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.61133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATION: Y, X, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 6 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 15 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 GLY A 497 REMARK 465 SER A 498 REMARK 465 SER A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 SER A 506 REMARK 465 ARG A 512 REMARK 465 THR A 531 REMARK 465 GLY A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 GLY A 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 575 O HOH A 80 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 SO4 A 5 O HOH A 58 2654 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 555 11.90 -150.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 555 OD1 REMARK 620 2 ARG A 557 O 79.6 REMARK 620 3 GLU A 551 OE1 75.3 76.4 REMARK 620 4 GLU A 562 OE1 147.7 78.0 120.8 REMARK 620 5 HOH A 53 O 88.0 105.2 162.8 75.9 REMARK 620 6 GLU A 562 OE2 162.8 115.6 99.4 48.8 95.3 REMARK 620 7 LYS A 553 O 85.4 150.5 75.4 124.3 99.4 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 DBREF 2I7A A 515 669 UNP Q17RF0 Q17RF0_HUMAN 515 669 SEQADV 2I7A MET A 496 UNP Q17RF0 INITIATING METHIONINE SEQADV 2I7A GLY A 497 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 498 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 499 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A HIS A 500 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 501 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 502 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 503 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 504 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A HIS A 505 UNP Q17RF0 EXPRESSION TAG SEQADV 2I7A SER A 506 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 507 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A GLY A 508 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A LEU A 509 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A VAL A 510 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A PRO A 511 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A ARG A 512 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A GLY A 513 UNP Q17RF0 CLONING ARTIFACT SEQADV 2I7A SER A 514 UNP Q17RF0 CLONING ARTIFACT SEQRES 1 A 174 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 174 LEU VAL PRO ARG GLY SER ASP ILE ASP ALA THR GLN LEU SEQRES 3 A 174 GLN GLY LEU LEU ASN GLN GLU LEU LEU THR GLY PRO PRO SEQRES 4 A 174 GLY ASP MET PHE SER LEU ASP GLU CYS ARG SER LEU VAL SEQRES 5 A 174 ALA LEU MET GLU LEU LYS VAL ASN GLY ARG LEU ASP GLN SEQRES 6 A 174 GLU GLU PHE ALA ARG LEU TRP LYS ARG LEU VAL HIS TYR SEQRES 7 A 174 GLN HIS VAL PHE GLN LYS VAL GLN THR SER PRO GLY VAL SEQRES 8 A 174 LEU LEU SER SER ASP LEU TRP LYS ALA ILE GLU ASN THR SEQRES 9 A 174 ASP PHE LEU ARG GLY ILE PHE ILE SER ARG GLU LEU LEU SEQRES 10 A 174 HIS LEU VAL THR LEU ARG TYR SER ASP SER VAL GLY ARG SEQRES 11 A 174 VAL SER PHE PRO SER LEU VAL CYS PHE LEU MET ARG LEU SEQRES 12 A 174 GLU ALA MET ALA LYS THR PHE ARG ASN LEU SER LYS ASP SEQRES 13 A 174 GLY LYS GLY LEU TYR LEU THR GLU MET GLU TRP MET SER SEQRES 14 A 174 LEU VAL MET TYR ASN HET CA A 2 1 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 5 5 HET SO4 A 6 5 HET GOL A 1 6 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *92(H2 O) HELIX 1 1 ALA A 518 LEU A 530 1 13 HELIX 2 2 SER A 539 GLU A 551 1 13 HELIX 3 3 ASP A 559 GLN A 581 1 23 HELIX 4 4 ASP A 591 ASN A 598 1 8 HELIX 5 5 THR A 599 ARG A 603 5 5 HELIX 6 6 SER A 608 SER A 620 1 13 HELIX 7 7 SER A 627 SER A 649 1 23 HELIX 8 8 THR A 658 TYR A 668 1 11 SHEET 1 A 2 ILE A 516 ASP A 517 0 SHEET 2 A 2 ARG A 557 LEU A 558 -1 O LEU A 558 N ILE A 516 SHEET 1 B 2 LEU A 587 LEU A 588 0 SHEET 2 B 2 ARG A 625 VAL A 626 -1 O VAL A 626 N LEU A 587 LINK CA CA A 2 OD1 ASN A 555 1555 1555 2.58 LINK CA CA A 2 O ARG A 557 1555 1555 2.35 LINK CA CA A 2 OE1 GLU A 551 1555 1555 2.50 LINK CA CA A 2 OE1 GLU A 562 1555 1555 2.60 LINK CA CA A 2 O HOH A 53 1555 1555 2.41 LINK CA CA A 2 OE2 GLU A 562 1555 1555 2.69 LINK CA CA A 2 O LYS A 553 1555 1555 2.34 SITE 1 AC1 6 HOH A 53 GLU A 551 LYS A 553 ASN A 555 SITE 2 AC1 6 ARG A 557 GLU A 562 SITE 1 AC2 8 HOH A 9 HOH A 19 HOH A 47 ASP A 536 SITE 2 AC2 8 LEU A 540 ARG A 544 SER A 627 SER A 630 SITE 1 AC3 2 ARG A 565 ARG A 569 SITE 1 AC4 4 HOH A 58 HOH A 81 HIS A 575 LYS A 579 SITE 1 AC5 3 HOH A 86 ASN A 555 ARG A 557 SITE 1 AC6 8 HOH A 80 HOH A 83 VAL A 571 GLN A 574 SITE 2 AC6 8 HIS A 575 GLN A 578 ILE A 607 LEU A 612 CRYST1 86.115 86.115 47.417 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011612 0.006704 0.000000 0.00000 SCALE2 0.000000 0.013409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021089 0.00000 MASTER 607 0 6 8 4 0 9 6 0 0 0 14 END