HEADER ANTIMICROBIAL PROTEIN 14-AUG-06 2I1E TITLE DPC MICELLE-BOUND NMR STRUCTURES OF TRITRP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 13-MER ANALOGUE OF PROPHENIN-1 CONTAINING WWW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: FMOC CHEMICAL SYNTHESIS. OCCURS NATURALLY IN SUS SOURCE 6 SCROFA KEYWDS TURN; ANTIMICROBIAL PEPTIDE; MICELLE-BOUND PEPTIDE, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.J.SCHIBLI,L.T.NGUYEN REVDAT 4 24-JUN-20 2I1E 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 LINK REVDAT 3 24-FEB-09 2I1E 1 VERSN REVDAT 2 13-FEB-07 2I1E 1 JRNL REVDAT 1 28-NOV-06 2I1E 0 JRNL AUTH D.J.SCHIBLI,L.T.NGUYEN,S.D.KERNAGHAN,O.REKDAL,H.J.VOGEL JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF TRITRPTICIN ANALOGS: JRNL TITL 2 POTENTIAL RELATIONSHIPS BETWEEN ANTIMICROBIAL ACTIVITIES, JRNL TITL 3 MODEL MEMBRANE INTERACTIONS, AND THEIR MICELLE-BOUND NMR JRNL TITL 4 STRUCTURES JRNL REF BIOPHYS.J. V. 91 4413 2006 JRNL REFN ISSN 0006-3495 JRNL PMID 16997878 JRNL DOI 10.1529/BIOPHYSJ.106.085837 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA 1.2 REMARK 4 REMARK 4 2I1E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039014. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 90% H2O, 10% D2O, 150 MM DPC-D38 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H NOESY; 1H TOCSY; 1H COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 LYS A 13 O - C - N ANGL. DEV. = -27.1 DEGREES REMARK 500 3 LYS A 13 O - C - N ANGL. DEV. = -29.2 DEGREES REMARK 500 4 LYS A 13 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 5 LYS A 13 O - C - N ANGL. DEV. = -48.3 DEGREES REMARK 500 8 LYS A 13 O - C - N ANGL. DEV. = -35.9 DEGREES REMARK 500 9 LYS A 13 O - C - N ANGL. DEV. = -39.3 DEGREES REMARK 500 10 LYS A 13 O - C - N ANGL. DEV. = -52.3 DEGREES REMARK 500 13 LYS A 13 O - C - N ANGL. DEV. = -13.0 DEGREES REMARK 500 14 LYS A 13 O - C - N ANGL. DEV. = -39.8 DEGREES REMARK 500 17 LYS A 13 O - C - N ANGL. DEV. = -26.7 DEGREES REMARK 500 18 LYS A 13 O - C - N ANGL. DEV. = -20.0 DEGREES REMARK 500 19 LYS A 13 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 20 LYS A 13 O - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 39.37 -175.62 REMARK 500 1 PRO A 5 -63.69 -91.16 REMARK 500 1 TRP A 6 -40.62 179.58 REMARK 500 1 PRO A 9 -20.28 -38.69 REMARK 500 1 LEU A 11 62.23 -60.65 REMARK 500 1 LYS A 12 31.95 -149.63 REMARK 500 2 LYS A 2 -39.38 -172.38 REMARK 500 2 LYS A 3 29.52 -175.16 REMARK 500 2 TRP A 6 -43.26 -179.93 REMARK 500 2 PRO A 9 -22.72 -34.75 REMARK 500 2 LEU A 11 62.14 -58.39 REMARK 500 2 LYS A 12 29.66 -149.40 REMARK 500 3 LYS A 3 14.73 -176.04 REMARK 500 3 TRP A 6 -43.03 179.63 REMARK 500 3 PRO A 9 -24.98 -33.69 REMARK 500 3 LEU A 11 67.80 -60.73 REMARK 500 3 LYS A 12 -53.66 -158.12 REMARK 500 4 LYS A 2 -37.87 -170.33 REMARK 500 4 LYS A 3 26.42 -175.09 REMARK 500 4 PRO A 5 -70.99 -79.48 REMARK 500 4 TRP A 6 -40.20 179.92 REMARK 500 4 PRO A 9 -20.47 -37.47 REMARK 500 4 LEU A 11 63.29 -61.53 REMARK 500 4 LYS A 12 31.79 -152.95 REMARK 500 5 LYS A 2 -41.57 -169.83 REMARK 500 5 LYS A 3 37.73 -175.46 REMARK 500 5 PRO A 5 -64.78 -91.80 REMARK 500 5 TRP A 6 -39.59 179.35 REMARK 500 5 PRO A 9 -20.36 -38.95 REMARK 500 5 LEU A 11 64.41 -60.19 REMARK 500 5 LYS A 12 30.23 -150.21 REMARK 500 6 LYS A 2 87.47 -64.35 REMARK 500 6 LYS A 3 -36.30 -158.86 REMARK 500 6 TRP A 6 -41.30 -179.69 REMARK 500 6 PRO A 9 -18.83 -38.73 REMARK 500 6 LEU A 11 63.75 -60.20 REMARK 500 6 LYS A 12 32.07 -152.03 REMARK 500 7 LYS A 2 45.51 -173.15 REMARK 500 7 LYS A 3 26.16 -176.04 REMARK 500 7 TRP A 6 -39.89 179.70 REMARK 500 7 PRO A 9 -22.04 -33.15 REMARK 500 8 LYS A 3 27.03 -160.77 REMARK 500 8 PRO A 5 -70.36 -77.97 REMARK 500 8 TRP A 6 -40.45 -179.81 REMARK 500 8 PRO A 9 -17.02 -37.48 REMARK 500 8 LEU A 11 55.95 -64.68 REMARK 500 9 LYS A 3 -22.25 -168.45 REMARK 500 9 PRO A 5 -80.18 -55.79 REMARK 500 9 TRP A 6 -47.15 -179.69 REMARK 500 9 PRO A 9 -30.94 -28.87 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 14 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I1D RELATED DB: PDB REMARK 900 TRITRP1 REMARK 900 RELATED ID: 2I1F RELATED DB: PDB REMARK 900 TRITRP3 REMARK 900 RELATED ID: 2I1G RELATED DB: PDB REMARK 900 TRITRP5 REMARK 900 RELATED ID: 2I1H RELATED DB: PDB REMARK 900 TRITRP7 REMARK 900 RELATED ID: 2I1I RELATED DB: PDB REMARK 900 TRITRP8 DBREF 2I1E A 1 14 PDB 2I1E 2I1E 1 14 SEQRES 1 A 14 VAL LYS LYS PHE PRO TRP TRP TRP PRO PHE LEU LYS LYS SEQRES 2 A 14 NH2 HET NH2 A 14 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 TRP A 7 LEU A 11 5 5 LINK C LYS A 13 N NH2 A 14 1555 1555 1.33 SITE 1 AC1 1 LYS A 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 189 0 1 1 0 0 1 6 0 0 0 2 END