HEADER ISOMERASE 08-AUG-06 2HZG TITLE CRYSTAL STRUCTURE OF PREDICTED MANDELATE RACEMASE FROM RHODOBACTER TITLE 2 SPHAEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME/ENOLASE COMPND 3 SUPERFAMILY; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 GENE: RSP_3884; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ATCC BAA-808 KEYWDS STRUCTURAL GENOMICS, PREDICTED MANDELATE RACEMASE, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 03-FEB-21 2HZG 1 AUTHOR REMARK SEQADV LINK REVDAT 5 18-OCT-17 2HZG 1 REMARK REVDAT 4 01-FEB-17 2HZG 1 TITLE REVDAT 3 13-JUL-11 2HZG 1 VERSN REVDAT 2 24-FEB-09 2HZG 1 VERSN REVDAT 1 29-AUG-06 2HZG 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PREDICTED MANDELATE RACEMASE FROM JRNL TITL 2 RHODOBACTER SPHAEROIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 60305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2656 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 895 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : 2.33000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6218 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8480 ; 1.325 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 833 ; 6.016 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;30.938 ;22.664 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 945 ;13.507 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 920 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4922 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3312 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4248 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 858 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.102 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.129 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4026 ; 0.658 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6391 ; 1.221 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2261 ; 2.146 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2088 ; 3.616 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE METHOD TO DETERMINE THIS STRUCTURE WAS S-SAD (SAD REMARK 3 WITH SULFUR) REMARK 4 REMARK 4 2HZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.74300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : 0.18100 REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M TRI-SODIUM CITRATE DIHYDRATE PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.08600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.35400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.86350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.35400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.08600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.86350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 MET B 1 REMARK 465 LEU B 393 REMARK 465 GLU B 394 REMARK 465 GLY B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 -174.12 -179.20 REMARK 500 VAL A 71 -57.10 -122.09 REMARK 500 TRP A 168 -135.48 59.16 REMARK 500 THR A 307 -136.74 -128.58 REMARK 500 HIS B 61 -172.32 178.18 REMARK 500 TRP B 168 -139.48 62.93 REMARK 500 PHE B 306 23.81 -160.95 REMARK 500 THR B 307 -115.13 -129.46 REMARK 500 ALA B 368 -39.64 -37.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 174 O REMARK 620 2 HOH A1366 O 85.4 REMARK 620 3 HOH A1396 O 96.7 172.5 REMARK 620 4 HOH A1400 O 107.5 91.4 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 199 OD2 REMARK 620 2 GLU A 227 OE2 96.3 REMARK 620 3 GLU A 254 OE2 147.9 88.9 REMARK 620 4 HOH A1228 O 71.8 107.9 76.4 REMARK 620 5 HOH A1258 O 91.3 95.2 119.8 152.4 REMARK 620 6 HOH A1266 O 98.6 164.6 80.4 80.4 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 199 OD2 REMARK 620 2 GLU B 227 OE2 96.1 REMARK 620 3 GLU B 254 OE1 162.4 71.9 REMARK 620 4 GLU B 254 OE2 152.6 111.1 42.5 REMARK 620 5 HOH B1359 O 76.1 119.1 120.7 87.2 REMARK 620 6 HOH B1363 O 92.3 96.5 76.8 88.3 143.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9278A RELATED DB: TARGETDB DBREF 2HZG A 4 393 UNP Q3HKK5 Q3HKK5_RHOS4 2 391 DBREF 2HZG B 4 393 UNP Q3HKK5 Q3HKK5_RHOS4 2 391 SEQADV 2HZG MET A 1 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG SER A 2 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG LEU A 3 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG GLU A 394 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG GLY A 395 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS A 396 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS A 397 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS A 398 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS A 399 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS A 400 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS A 401 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG MET B 1 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG SER B 2 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG LEU B 3 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG GLU B 394 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG GLY B 395 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS B 396 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS B 397 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS B 398 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS B 399 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS B 400 UNP Q3HKK5 CLONING ARTIFACT SEQADV 2HZG HIS B 401 UNP Q3HKK5 CLONING ARTIFACT SEQRES 1 A 401 MET SER LEU LYS ILE ASP ALA VAL ASP LEU PHE TYR LEU SEQRES 2 A 401 SER MET PRO GLU VAL THR ASP ALA ALA ASP GLY SER GLN SEQRES 3 A 401 ASP ALA LEU LEU VAL ARG VAL ALA ALA GLY GLY HIS ILE SEQRES 4 A 401 GLY TRP GLY GLU CYS GLU ALA ALA PRO LEU PRO SER ILE SEQRES 5 A 401 ALA ALA PHE VAL CYS PRO LYS SER HIS GLY VAL CYS ARG SEQRES 6 A 401 PRO VAL SER ASP SER VAL LEU GLY GLN ARG LEU ASP GLY SEQRES 7 A 401 PRO ASP ASP ILE ALA ARG ILE ALA ALA LEU VAL GLY TYR SEQRES 8 A 401 ASN SER MET ASP LEU LEU GLN ALA PRO HIS MET LEU SER SEQRES 9 A 401 GLY ILE GLU MET ALA LEU TRP ASP LEU LEU GLY ARG ARG SEQRES 10 A 401 LEU SER ALA PRO ALA TRP ALA LEU LEU GLY TYR SER ALA SEQRES 11 A 401 SER HIS GLY LYS ARG PRO TYR ALA SER LEU LEU PHE GLY SEQRES 12 A 401 ASP THR PRO GLN GLU THR LEU GLU ARG ALA ARG ALA ALA SEQRES 13 A 401 ARG ARG ASP GLY PHE ALA ALA VAL LYS PHE GLY TRP GLY SEQRES 14 A 401 PRO ILE GLY ARG GLY THR VAL ALA ALA ASP ALA ASP GLN SEQRES 15 A 401 ILE MET ALA ALA ARG GLU GLY LEU GLY PRO ASP GLY ASP SEQRES 16 A 401 LEU MET VAL ASP VAL GLY GLN ILE PHE GLY GLU ASP VAL SEQRES 17 A 401 GLU ALA ALA ALA ALA ARG LEU PRO THR LEU ASP ALA ALA SEQRES 18 A 401 GLY VAL LEU TRP LEU GLU GLU PRO PHE ASP ALA GLY ALA SEQRES 19 A 401 LEU ALA ALA HIS ALA ALA LEU ALA GLY ARG GLY ALA ARG SEQRES 20 A 401 VAL ARG ILE ALA GLY GLY GLU ALA ALA HIS ASN PHE HIS SEQRES 21 A 401 MET ALA GLN HIS LEU MET ASP TYR GLY ARG ILE GLY PHE SEQRES 22 A 401 ILE GLN ILE ASP CYS GLY ARG ILE GLY GLY LEU GLY PRO SEQRES 23 A 401 ALA LYS ARG VAL ALA ASP ALA ALA GLN ALA ARG GLY ILE SEQRES 24 A 401 THR TYR VAL ASN HIS THR PHE THR SER HIS LEU ALA LEU SEQRES 25 A 401 SER ALA SER LEU GLN PRO PHE ALA GLY LEU GLU ALA ASP SEQRES 26 A 401 ARG ILE CYS GLU TYR PRO ALA ALA PRO GLN GLN LEU ALA SEQRES 27 A 401 LEU ASP ILE THR GLY ASP HIS ILE ARG PRO ASP ALA GLU SEQRES 28 A 401 GLY LEU ILE ARG ALA PRO GLU ALA PRO GLY LEU GLY LEU SEQRES 29 A 401 GLN VAL ALA ALA SER ALA LEU ARG ARG TYR LEU VAL GLU SEQRES 30 A 401 THR GLU ILE ARG ILE GLY GLY GLN LEU ILE TYR ARG THR SEQRES 31 A 401 PRO GLN LEU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 401 MET SER LEU LYS ILE ASP ALA VAL ASP LEU PHE TYR LEU SEQRES 2 B 401 SER MET PRO GLU VAL THR ASP ALA ALA ASP GLY SER GLN SEQRES 3 B 401 ASP ALA LEU LEU VAL ARG VAL ALA ALA GLY GLY HIS ILE SEQRES 4 B 401 GLY TRP GLY GLU CYS GLU ALA ALA PRO LEU PRO SER ILE SEQRES 5 B 401 ALA ALA PHE VAL CYS PRO LYS SER HIS GLY VAL CYS ARG SEQRES 6 B 401 PRO VAL SER ASP SER VAL LEU GLY GLN ARG LEU ASP GLY SEQRES 7 B 401 PRO ASP ASP ILE ALA ARG ILE ALA ALA LEU VAL GLY TYR SEQRES 8 B 401 ASN SER MET ASP LEU LEU GLN ALA PRO HIS MET LEU SER SEQRES 9 B 401 GLY ILE GLU MET ALA LEU TRP ASP LEU LEU GLY ARG ARG SEQRES 10 B 401 LEU SER ALA PRO ALA TRP ALA LEU LEU GLY TYR SER ALA SEQRES 11 B 401 SER HIS GLY LYS ARG PRO TYR ALA SER LEU LEU PHE GLY SEQRES 12 B 401 ASP THR PRO GLN GLU THR LEU GLU ARG ALA ARG ALA ALA SEQRES 13 B 401 ARG ARG ASP GLY PHE ALA ALA VAL LYS PHE GLY TRP GLY SEQRES 14 B 401 PRO ILE GLY ARG GLY THR VAL ALA ALA ASP ALA ASP GLN SEQRES 15 B 401 ILE MET ALA ALA ARG GLU GLY LEU GLY PRO ASP GLY ASP SEQRES 16 B 401 LEU MET VAL ASP VAL GLY GLN ILE PHE GLY GLU ASP VAL SEQRES 17 B 401 GLU ALA ALA ALA ALA ARG LEU PRO THR LEU ASP ALA ALA SEQRES 18 B 401 GLY VAL LEU TRP LEU GLU GLU PRO PHE ASP ALA GLY ALA SEQRES 19 B 401 LEU ALA ALA HIS ALA ALA LEU ALA GLY ARG GLY ALA ARG SEQRES 20 B 401 VAL ARG ILE ALA GLY GLY GLU ALA ALA HIS ASN PHE HIS SEQRES 21 B 401 MET ALA GLN HIS LEU MET ASP TYR GLY ARG ILE GLY PHE SEQRES 22 B 401 ILE GLN ILE ASP CYS GLY ARG ILE GLY GLY LEU GLY PRO SEQRES 23 B 401 ALA LYS ARG VAL ALA ASP ALA ALA GLN ALA ARG GLY ILE SEQRES 24 B 401 THR TYR VAL ASN HIS THR PHE THR SER HIS LEU ALA LEU SEQRES 25 B 401 SER ALA SER LEU GLN PRO PHE ALA GLY LEU GLU ALA ASP SEQRES 26 B 401 ARG ILE CYS GLU TYR PRO ALA ALA PRO GLN GLN LEU ALA SEQRES 27 B 401 LEU ASP ILE THR GLY ASP HIS ILE ARG PRO ASP ALA GLU SEQRES 28 B 401 GLY LEU ILE ARG ALA PRO GLU ALA PRO GLY LEU GLY LEU SEQRES 29 B 401 GLN VAL ALA ALA SER ALA LEU ARG ARG TYR LEU VAL GLU SEQRES 30 B 401 THR GLU ILE ARG ILE GLY GLY GLN LEU ILE TYR ARG THR SEQRES 31 B 401 PRO GLN LEU GLU GLY HIS HIS HIS HIS HIS HIS HET NA A1101 1 HET NA A1103 1 HET GOL A1201 6 HET GOL A1203 6 HET NA B1102 1 HET GOL B1202 6 HET GOL B1204 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 3(NA 1+) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 10 HOH *895(H2 O) HELIX 1 1 ASP A 23 SER A 25 5 3 HELIX 2 2 ALA A 47 CYS A 57 1 11 HELIX 3 3 PRO A 66 VAL A 71 5 6 HELIX 4 4 GLY A 78 SER A 93 1 16 HELIX 5 5 GLN A 98 SER A 119 1 22 HELIX 6 6 PRO A 121 LEU A 126 1 6 HELIX 7 7 THR A 145 ASP A 159 1 15 HELIX 8 8 THR A 175 GLY A 191 1 17 HELIX 9 9 ASP A 207 ALA A 213 1 7 HELIX 10 10 ARG A 214 ALA A 221 1 8 HELIX 11 11 ALA A 234 GLY A 243 1 10 HELIX 12 12 ASN A 258 GLY A 269 1 12 HELIX 13 13 ASP A 277 GLY A 282 1 6 HELIX 14 14 GLY A 283 GLY A 298 1 16 HELIX 15 15 SER A 308 GLN A 317 1 10 HELIX 16 16 PRO A 318 ALA A 320 5 3 HELIX 17 17 GLN A 335 ILE A 341 1 7 HELIX 18 18 ALA A 367 LEU A 375 1 9 HELIX 19 19 ASP B 23 SER B 25 5 3 HELIX 20 20 ALA B 47 CYS B 57 1 11 HELIX 21 21 PRO B 66 VAL B 71 5 6 HELIX 22 22 GLY B 78 SER B 93 1 16 HELIX 23 23 GLN B 98 LEU B 118 1 21 HELIX 24 24 PRO B 121 LEU B 126 1 6 HELIX 25 25 THR B 145 ASP B 159 1 15 HELIX 26 26 THR B 175 GLY B 191 1 17 HELIX 27 27 ASP B 207 ALA B 213 1 7 HELIX 28 28 ARG B 214 ALA B 221 1 8 HELIX 29 29 ALA B 234 GLY B 243 1 10 HELIX 30 30 ASN B 258 TYR B 268 1 11 HELIX 31 31 ASP B 277 GLY B 282 1 6 HELIX 32 32 GLY B 283 GLY B 298 1 16 HELIX 33 33 SER B 308 GLN B 317 1 10 HELIX 34 34 PRO B 318 ALA B 320 5 3 HELIX 35 35 GLN B 335 ILE B 341 1 7 HELIX 36 36 ALA B 367 LEU B 375 1 9 SHEET 1 A 3 ILE A 5 SER A 14 0 SHEET 2 A 3 ASP A 27 ALA A 35 -1 O ARG A 32 N ASP A 9 SHEET 3 A 3 HIS A 38 CYS A 44 -1 O GLY A 42 N VAL A 31 SHEET 1 B 8 THR A 300 ASN A 303 0 SHEET 2 B 8 PHE A 273 ILE A 276 1 N ILE A 274 O THR A 300 SHEET 3 B 8 ARG A 249 GLY A 252 1 N GLY A 252 O GLN A 275 SHEET 4 B 8 TRP A 225 GLU A 227 1 N LEU A 226 O ARG A 249 SHEET 5 B 8 ASP A 195 ASP A 199 1 N VAL A 198 O GLU A 227 SHEET 6 B 8 ALA A 163 GLY A 167 1 N VAL A 164 O ASP A 195 SHEET 7 B 8 ARG A 135 LEU A 141 1 N ALA A 138 O LYS A 165 SHEET 8 B 8 ILE A 327 PRO A 331 1 O TYR A 330 N SER A 139 SHEET 1 C 4 GLN A 385 ARG A 389 0 SHEET 2 C 4 THR A 378 ILE A 382 -1 N ILE A 380 O ILE A 387 SHEET 3 C 4 THR B 378 ILE B 382 -1 O GLU B 379 N ARG A 381 SHEET 4 C 4 GLN B 385 ARG B 389 -1 O ILE B 387 N ILE B 380 SHEET 1 D 3 ILE B 5 SER B 14 0 SHEET 2 D 3 ASP B 27 ALA B 35 -1 O LEU B 30 N PHE B 11 SHEET 3 D 3 HIS B 38 CYS B 44 -1 O GLY B 42 N VAL B 31 SHEET 1 E 8 THR B 300 ASN B 303 0 SHEET 2 E 8 PHE B 273 ILE B 276 1 N ILE B 274 O VAL B 302 SHEET 3 E 8 ARG B 249 GLY B 252 1 N GLY B 252 O GLN B 275 SHEET 4 E 8 TRP B 225 GLU B 227 1 N LEU B 226 O ARG B 249 SHEET 5 E 8 ASP B 195 ASP B 199 1 N VAL B 198 O GLU B 227 SHEET 6 E 8 ALA B 163 GLY B 167 1 N PHE B 166 O ASP B 199 SHEET 7 E 8 ARG B 135 LEU B 141 1 N LEU B 140 O LYS B 165 SHEET 8 E 8 ILE B 327 GLU B 329 1 O CYS B 328 N ARG B 135 LINK O GLY A 174 NA NA A1103 1555 1555 2.32 LINK OD2 ASP A 199 NA NA A1101 1555 1555 2.34 LINK OE2 GLU A 227 NA NA A1101 1555 1555 2.34 LINK OE2 GLU A 254 NA NA A1101 1555 1555 2.17 LINK NA NA A1101 O HOH A1228 1555 1555 2.84 LINK NA NA A1101 O HOH A1258 1555 1555 2.57 LINK NA NA A1101 O HOH A1266 1555 1555 2.46 LINK NA NA A1103 O HOH A1366 1555 1555 2.53 LINK NA NA A1103 O HOH A1396 1555 1555 2.31 LINK NA NA A1103 O HOH A1400 1555 1555 2.35 LINK OD2 ASP B 199 NA NA B1102 1555 1555 2.38 LINK OE2 GLU B 227 NA NA B1102 1555 1555 2.42 LINK OE1 GLU B 254 NA NA B1102 1555 1555 2.38 LINK OE2 GLU B 254 NA NA B1102 1555 1555 3.20 LINK NA NA B1102 O HOH B1359 1555 1555 2.45 LINK NA NA B1102 O HOH B1363 1555 1555 2.38 SITE 1 AC1 7 ASP A 199 GLU A 227 GLU A 254 HIS A 304 SITE 2 AC1 7 HOH A1228 HOH A1258 HOH A1266 SITE 1 AC2 5 ASP B 199 GLU B 227 GLU B 254 HOH B1359 SITE 2 AC2 5 HOH B1363 SITE 1 AC3 5 GLY A 174 HOH A1366 HOH A1396 HOH A1400 SITE 2 AC3 5 HOH B1423 SITE 1 AC4 5 ARG A 249 ARG A 270 GLY A 272 HOH A1215 SITE 2 AC4 5 HOH A1640 SITE 1 AC5 4 ASP B 159 GLY B 160 PHE B 161 TYR B 330 SITE 1 AC6 1 GLY A 160 SITE 1 AC7 7 LEU B 224 PHE B 273 THR B 300 ALA B 324 SITE 2 AC7 7 ARG B 326 ILE B 327 HOH B1212 CRYST1 62.172 117.727 132.708 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007535 0.00000 MASTER 357 0 7 36 26 0 12 6 0 0 0 62 END