HEADER HYDROLASE 07-AUG-06 2HYP TITLE CRYSTAL STRUCTURE OF RV0805 D66A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RV0805; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE; COMPND 5 SYNONYM: ICC PROTEIN; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ICC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTC KEYWDS METALLOPHOSPHOESTERASE, CAMP, PHOSPHODIESTERASE, BI-NUCLEAR ACTIVE KEYWDS 2 SITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.SHENOY,M.CAPUDER,P.DRASKOVIC,D.LAMBA,S.S.VISWESWARIAH,M.PODOBNIK REVDAT 5 20-OCT-21 2HYP 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2HYP 1 REMARK REVDAT 3 13-JUL-11 2HYP 1 VERSN REVDAT 2 24-FEB-09 2HYP 1 VERSN REVDAT 1 26-DEC-06 2HYP 0 JRNL AUTH A.R.SHENOY,M.CAPUDER,P.DRASKOVIC,D.LAMBA,S.S.VISWESWARIAH, JRNL AUTH 2 M.PODOBNIK JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE RV0805 CYCLIC JRNL TITL 2 NUCLEOTIDE PHOSPHODIESTERASE FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 365 211 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17059828 JRNL DOI 10.1016/J.JMB.2006.10.005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.SHENOY,N.SREENATH,M.PODOBNIK,M.KOVACEVIC, REMARK 1 AUTH 2 S.S.VISWESWARIAH REMARK 1 TITL THE RV0805 GENE FROM MYCOBACTERIUM TUBERCULOSIS ENCODES A REMARK 1 TITL 2 3',5'-CYCLIC NUCLEOTIDE PHOSPHODIESTERASE: BIOCHEMICAL AND REMARK 1 TITL 3 MUTATIONAL ANALYSIS. REMARK 1 REF BIOCHEMISTRY V. 44 15695 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16313172 REMARK 1 DOI 10.1021/BI0512391 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 16572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.300 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85000 REMARK 3 B22 (A**2) : -2.25000 REMARK 3 B33 (A**2) : 4.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1781 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2431 ; 1.142 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 4.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;36.127 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;15.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1346 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 743 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1191 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1178 ; 0.447 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1840 ; 0.777 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 668 ; 1.037 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 591 ; 1.657 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3460 15.5288 -7.5018 REMARK 3 T TENSOR REMARK 3 T11: -0.3552 T22: -0.3346 REMARK 3 T33: -0.1804 T12: -0.0007 REMARK 3 T13: -0.0379 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.8234 L22: 4.4218 REMARK 3 L33: 1.8132 L12: 0.0141 REMARK 3 L13: -0.0211 L23: -0.4589 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: 0.3970 S13: 0.1725 REMARK 3 S21: -0.4827 S22: 0.0129 S23: -0.0027 REMARK 3 S31: -0.0484 S32: 0.0170 S33: 0.0753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.885 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI) REMARK 200 OPTICS : MONOCHROMATOR, MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MGCL2, CACODYLATE, NABR, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.64850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.85450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.64850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.85450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS:-X,-Y,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 HIS A 9 REMARK 465 ARG A 29 REMARK 465 ARG A 30 REMARK 465 LEU A 31 REMARK 465 TYR A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 VAL A 35 REMARK 465 TYR A 229 REMARK 465 THR A 230 REMARK 465 GLN A 231 REMARK 465 ASP A 232 REMARK 465 LEU A 233 REMARK 465 THR A 234 REMARK 465 VAL A 235 REMARK 465 ALA A 236 REMARK 465 ALA A 237 REMARK 465 GLY A 238 REMARK 465 GLY A 239 REMARK 465 THR A 240 REMARK 465 ARG A 241 REMARK 465 GLY A 242 REMARK 465 ARG A 243 REMARK 465 ASP A 244 REMARK 465 GLY A 245 REMARK 465 ALA A 246 REMARK 465 GLN A 247 REMARK 465 LEU A 266 REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 GLY A 269 REMARK 465 GLU A 270 REMARK 465 THR A 271 REMARK 465 VAL A 272 REMARK 465 GLY A 273 REMARK 465 THR A 274 REMARK 465 PHE A 275 REMARK 465 VAL A 276 REMARK 465 SER A 277 REMARK 465 PRO A 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 63 O HOH A 608 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 143 O HOH A 584 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -168.26 -115.65 REMARK 500 THR A 61 48.92 -86.08 REMARK 500 ASP A 125 -115.35 55.54 REMARK 500 HIS A 169 -64.56 -93.17 REMARK 500 HIS A 207 -38.22 80.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 444 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 HIS A 23 NE2 114.7 REMARK 620 3 ASP A 63 OD2 85.5 106.9 REMARK 620 4 HIS A 209 NE2 83.3 97.5 155.6 REMARK 620 5 CAC A 400 O1 155.3 89.6 91.8 89.4 REMARK 620 6 HOH A 608 O 75.6 163.2 59.2 97.0 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 555 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD2 REMARK 620 2 ASN A 97 OD1 94.6 REMARK 620 3 HIS A 169 NE2 94.0 84.3 REMARK 620 4 HIS A 207 ND1 167.9 97.4 88.5 REMARK 620 5 CAC A 400 O2 87.8 82.5 166.8 92.4 REMARK 620 6 HOH A 608 O 61.7 149.1 114.9 106.6 77.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HY1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD TYPE RV0805 REMARK 900 RELATED ID: 2HYO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RV0805 N97A MUTANT DBREF 2HYP A 3 278 UNP O06629 O06629_MYCTU 3 278 SEQADV 2HYP GLY A -1 UNP O06629 CLONING ARTIFACT SEQADV 2HYP ALA A 0 UNP O06629 CLONING ARTIFACT SEQADV 2HYP MET A 1 UNP O06629 CLONING ARTIFACT SEQADV 2HYP ASP A 2 UNP O06629 CLONING ARTIFACT SEQADV 2HYP ALA A 66 UNP O06629 ASP 66 ENGINEERED MUTATION SEQRES 1 A 280 GLY ALA MET ASP ARG LEU ARG ALA ALA GLU HIS PRO ARG SEQRES 2 A 280 PRO ASP TYR VAL LEU LEU HIS ILE SER ASP THR HIS LEU SEQRES 3 A 280 ILE GLY GLY ASP ARG ARG LEU TYR GLY ALA VAL ASP ALA SEQRES 4 A 280 ASP ASP ARG LEU GLY GLU LEU LEU GLU GLN LEU ASN GLN SEQRES 5 A 280 SER GLY LEU ARG PRO ASP ALA ILE VAL PHE THR GLY ASP SEQRES 6 A 280 LEU ALA ALA LYS GLY GLU PRO ALA ALA TYR ARG LYS LEU SEQRES 7 A 280 ARG GLY LEU VAL GLU PRO PHE ALA ALA GLN LEU GLY ALA SEQRES 8 A 280 GLU LEU VAL TRP VAL MET GLY ASN HIS ASP ASP ARG ALA SEQRES 9 A 280 GLU LEU ARG LYS PHE LEU LEU ASP GLU ALA PRO SER MET SEQRES 10 A 280 ALA PRO LEU ASP ARG VAL CYS MET ILE ASP GLY LEU ARG SEQRES 11 A 280 ILE ILE VAL LEU ASP THR SER VAL PRO GLY HIS HIS HIS SEQRES 12 A 280 GLY GLU ILE ARG ALA SER GLN LEU GLY TRP LEU ALA GLU SEQRES 13 A 280 GLU LEU ALA THR PRO ALA PRO ASP GLY THR ILE LEU ALA SEQRES 14 A 280 LEU HIS HIS PRO PRO ILE PRO SER VAL LEU ASP MET ALA SEQRES 15 A 280 VAL THR VAL GLU LEU ARG ASP GLN ALA ALA LEU GLY ARG SEQRES 16 A 280 VAL LEU ARG GLY THR ASP VAL ARG ALA ILE LEU ALA GLY SEQRES 17 A 280 HIS LEU HIS TYR SER THR ASN ALA THR PHE VAL GLY ILE SEQRES 18 A 280 PRO VAL SER VAL ALA SER ALA THR CYS TYR THR GLN ASP SEQRES 19 A 280 LEU THR VAL ALA ALA GLY GLY THR ARG GLY ARG ASP GLY SEQRES 20 A 280 ALA GLN GLY CYS ASN LEU VAL HIS VAL TYR PRO ASP THR SEQRES 21 A 280 VAL VAL HIS SER VAL ILE PRO LEU GLY GLY GLY GLU THR SEQRES 22 A 280 VAL GLY THR PHE VAL SER PRO HET FE A 444 1 HET MN A 555 1 HET BR A 301 1 HET BR A 302 1 HET BR A 303 1 HET BR A 304 1 HET CAC A 400 5 HETNAM FE FE (III) ION HETNAM MN MANGANESE (II) ION HETNAM BR BROMIDE ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 2 FE FE 3+ FORMUL 3 MN MN 2+ FORMUL 4 BR 4(BR 1-) FORMUL 8 CAC C2 H6 AS O2 1- FORMUL 9 HOH *55(H2 O) HELIX 1 1 ASP A 36 GLY A 52 1 17 HELIX 2 2 GLU A 69 GLY A 88 1 20 HELIX 3 3 ASP A 100 LEU A 108 1 9 HELIX 4 4 ARG A 145 ALA A 157 1 13 HELIX 5 5 LEU A 177 THR A 182 1 6 HELIX 6 6 ASP A 187 ARG A 196 1 10 SHEET 1 A 5 GLU A 90 TRP A 93 0 SHEET 2 A 5 ALA A 57 PHE A 60 1 N PHE A 60 O VAL A 92 SHEET 3 A 5 TYR A 14 ILE A 19 1 N LEU A 17 O VAL A 59 SHEET 4 A 5 CYS A 249 VAL A 254 -1 O ASN A 250 N HIS A 18 SHEET 5 A 5 VAL A 259 ILE A 264 -1 O ILE A 264 N CYS A 249 SHEET 1 B 6 ARG A 120 ILE A 124 0 SHEET 2 B 6 LEU A 127 VAL A 131 -1 O LEU A 127 N ILE A 124 SHEET 3 B 6 THR A 164 ALA A 167 1 O ALA A 167 N ILE A 130 SHEET 4 B 6 VAL A 200 ALA A 205 1 O LEU A 204 N LEU A 166 SHEET 5 B 6 ILE A 219 VAL A 223 1 O SER A 222 N ILE A 203 SHEET 6 B 6 THR A 212 PHE A 216 -1 N ALA A 214 O VAL A 221 LINK OD1 ASP A 21 FE FE A 444 1555 1555 2.04 LINK NE2 HIS A 23 FE FE A 444 1555 1555 2.20 LINK OD2 ASP A 63 FE FE A 444 1555 1555 2.35 LINK OD2 ASP A 63 MN MN A 555 1555 1555 2.15 LINK OD1 ASN A 97 MN MN A 555 1555 1555 2.12 LINK NE2 HIS A 169 MN MN A 555 1555 1555 2.11 LINK ND1 HIS A 207 MN MN A 555 1555 1555 2.20 LINK NE2 HIS A 209 FE FE A 444 1555 1555 2.26 LINK O1 CAC A 400 FE FE A 444 1555 1555 2.33 LINK O2 CAC A 400 MN MN A 555 1555 1555 2.21 LINK FE FE A 444 O HOH A 608 1555 1555 1.96 LINK MN MN A 555 O HOH A 608 1555 1555 2.06 SITE 1 AC1 7 ASP A 21 HIS A 23 ASP A 63 HIS A 209 SITE 2 AC1 7 CAC A 400 MN A 555 HOH A 608 SITE 1 AC2 7 ASP A 63 ASN A 97 HIS A 169 HIS A 207 SITE 2 AC2 7 CAC A 400 FE A 444 HOH A 608 SITE 1 AC3 2 PRO A 113 SER A 114 SITE 1 AC4 2 TYR A 255 ASP A 257 SITE 1 AC5 4 ARG A 101 MET A 123 ASP A 125 ARG A 145 SITE 1 AC6 4 VAL A 121 ARG A 186 HOH A 593 HOH A 603 SITE 1 AC7 9 HIS A 23 ASP A 63 ASN A 97 HIS A 98 SITE 2 AC7 9 HIS A 207 HIS A 209 FE A 444 MN A 555 SITE 3 AC7 9 HOH A 608 CRYST1 55.297 93.709 50.924 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019637 0.00000 MASTER 438 0 7 6 11 0 11 6 0 0 0 22 END