HEADER HYDROLASE, REPLICATION 31-JUL-06 2HW0 TITLE NMR SOLUTION STRUCTURE OF THE NUCLEASE DOMAIN FROM THE TITLE 2 REPLICATOR INITIATOR PROTEIN FROM PORCINE CIRCOVIRUS PCV2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-116 OF REP PCV2; COMPND 5 EC: 3.1.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE CIRCOVIRUS 2; SOURCE 3 ORGANISM_TAXID: 85708; SOURCE 4 GENE: REP, ORF1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSSETA (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ALPHA+BETA, HYDROLASE, REPLICATION EXPDTA SOLUTION NMR NUMMDL 31 MDLTYP MINIMIZED AVERAGE AUTHOR S.VEGA-ROCHA,I.L.BYEON,B.GRONENBORN,A.M.GRONENBORN,R.CAMPOS- AUTHOR 2 OLIVAS REVDAT 2 24-FEB-09 2HW0 1 VERSN REVDAT 1 12-JUN-07 2HW0 0 JRNL AUTH S.VEGA-ROCHA,I.L.BYEON,B.GRONENBORN,A.M.GRONENBORN, JRNL AUTH 2 R.CAMPOS-OLIVAS JRNL TITL SOLUTION STRUCTURE, DIVALENT METAL AND DNA BINDING JRNL TITL 2 OF THE ENDONUCLEASE DOMAIN FROM THE REPLICATION JRNL TITL 3 INITIATION PROTEIN FROM PORCINE CIRCOVIRUS 2 JRNL REF J.MOL.BIOL. V. 367 473 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17275023 JRNL DOI 10.1016/J.JMB.2007.01.002 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : PETER GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HW0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB038827. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.264 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM REP2-116_PCV2 U-10% REMARK 210 13C;U-15N, 20 MM SODIUM REMARK 210 PHOSPHATE, 100MM NACL, 1MM REMARK 210 DTT, 8% D2O; 0.8MM REP2-116_ REMARK 210 PCV2 U-10% 13C;U-15N, 20 MM REMARK 210 SODIUM PHOSPHATE, 100MM NACL, REMARK 210 1MM DTT, 100% D2O; 0.8MM REP2- REMARK 210 116_PCV2 U-13C; U-15N, 20 MM REMARK 210 SODIUM PHOSPHATE, 100MM NACL, REMARK 210 1MM DTT, 8% D2O; 0.8MM REP2- REMARK 210 116_PCV2 U-13C;U-15N, 20 MM REMARK 210 SODIUM PHOSPHATE, 100MM NACL, REMARK 210 1MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 HNHB, 4D_13C/15N-SEPARATED_ REMARK 210 NOESY, 2D HNCOCG AROMATIC, 2D REMARK 210 HNCG AROMATIC, 4D_13C- REMARK 210 SEPARATED_NOESY, 2D 1H-15N REMARK 210 HSQC, 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRVIEW 5.0.4, REMARK 210 CYANA 2.0, NMRPIPE X, TALOS X REMARK 210 METHOD USED : 30 CONFORMERS CALCULATED REMARK 210 USING SIMULATED ANHEALING IN REMARK 210 TORSION ANGLE SPACE WITH REMARK 210 CYANA2.0 (MODELS 2-31) & REMARK 210 AVERAGE STRUCTURE AFTER CYANA REMARK 210 VARIABLE TARGET FUNCTION REMARK 210 MINIMISATION (MODEL 1) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 110 80.55 -69.80 REMARK 500 1 GLN A 115 -55.98 -168.48 REMARK 500 2 LYS A 4 -172.33 56.08 REMARK 500 2 PRO A 110 82.40 -69.73 REMARK 500 3 ASN A 50 -169.96 -60.77 REMARK 500 3 GLU A 51 172.85 -53.95 REMARK 500 3 PRO A 110 81.94 -69.76 REMARK 500 3 GLN A 115 -64.44 -92.63 REMARK 500 4 ARG A 8 81.21 -161.64 REMARK 500 4 GLN A 115 141.61 -171.95 REMARK 500 5 SER A 3 118.27 -167.67 REMARK 500 5 ASN A 50 -169.84 -61.00 REMARK 500 5 GLU A 51 170.52 -54.68 REMARK 500 5 PRO A 110 74.81 -69.76 REMARK 500 5 SER A 112 -64.14 -121.40 REMARK 500 5 GLN A 115 -61.30 -154.23 REMARK 500 6 GLU A 51 101.65 -179.36 REMARK 500 6 PRO A 110 80.58 -69.72 REMARK 500 7 ASN A 6 -73.97 -170.61 REMARK 500 7 ARG A 8 -63.46 -170.01 REMARK 500 7 SER A 9 -174.61 61.74 REMARK 500 7 PRO A 110 76.65 -69.77 REMARK 500 7 SER A 112 -169.97 -110.48 REMARK 500 8 SER A 3 114.30 -175.99 REMARK 500 8 ASN A 50 -169.61 -60.36 REMARK 500 8 PRO A 110 78.46 -69.75 REMARK 500 8 SER A 112 47.70 -175.39 REMARK 500 9 LYS A 4 115.32 -178.18 REMARK 500 9 ASN A 50 -170.12 -60.97 REMARK 500 9 GLU A 51 -177.60 -60.12 REMARK 500 10 SER A 9 -47.28 -163.50 REMARK 500 10 ASN A 50 -170.31 -61.00 REMARK 500 10 GLU A 51 175.96 -59.36 REMARK 500 11 ASN A 50 38.60 -97.67 REMARK 500 11 GLN A 115 69.75 -109.05 REMARK 500 12 ASN A 50 -170.05 -61.13 REMARK 500 12 GLU A 51 175.87 -56.84 REMARK 500 13 PRO A 110 83.54 -69.70 REMARK 500 14 ASN A 6 98.39 -179.31 REMARK 500 14 ASN A 50 38.98 -97.93 REMARK 500 14 GLN A 113 -58.23 -142.60 REMARK 500 15 SER A 3 -176.19 63.07 REMARK 500 15 LYS A 4 177.65 63.27 REMARK 500 15 SER A 9 -74.51 -123.56 REMARK 500 16 SER A 3 84.29 -158.28 REMARK 500 16 ARG A 8 -174.63 -174.56 REMARK 500 16 PRO A 110 79.62 -69.69 REMARK 500 17 SER A 3 -179.56 -58.69 REMARK 500 17 ASN A 6 134.29 -175.47 REMARK 500 17 SER A 9 164.57 63.20 REMARK 500 17 GLU A 51 112.66 -178.04 REMARK 500 17 GLN A 113 117.74 -174.27 REMARK 500 17 GLN A 115 -176.75 60.96 REMARK 500 18 PRO A 110 75.72 -69.69 REMARK 500 18 SER A 112 112.04 -175.27 REMARK 500 18 GLN A 113 81.20 53.33 REMARK 500 18 GLN A 115 -45.58 -170.92 REMARK 500 19 SER A 112 52.71 -152.27 REMARK 500 19 GLN A 113 97.25 62.58 REMARK 500 19 GLN A 115 -52.41 -166.43 REMARK 500 20 SER A 9 62.48 -166.81 REMARK 500 20 PRO A 110 96.96 -69.77 REMARK 500 21 ASN A 50 42.13 -98.71 REMARK 500 21 PRO A 110 78.87 -69.75 REMARK 500 22 GLU A 51 95.31 -179.28 REMARK 500 22 PRO A 110 86.06 -69.79 REMARK 500 22 GLN A 115 -65.04 -170.47 REMARK 500 23 LYS A 4 165.46 63.27 REMARK 500 23 SER A 9 -57.93 -173.60 REMARK 500 23 GLN A 115 -74.51 -74.52 REMARK 500 24 ASN A 6 130.42 -171.08 REMARK 500 24 GLU A 51 141.27 -179.66 REMARK 500 24 PRO A 110 76.89 -69.81 REMARK 500 24 GLN A 113 -72.54 -73.84 REMARK 500 24 GLN A 115 -57.15 -139.37 REMARK 500 25 SER A 3 -45.52 -178.74 REMARK 500 25 SER A 9 133.87 -172.23 REMARK 500 25 PRO A 110 81.20 -69.81 REMARK 500 25 SER A 112 -71.45 -154.84 REMARK 500 26 LYS A 4 84.49 56.04 REMARK 500 26 PRO A 110 75.56 -69.79 REMARK 500 26 SER A 112 -73.63 -129.85 REMARK 500 27 SER A 3 94.39 60.70 REMARK 500 27 ASN A 50 -171.06 -60.67 REMARK 500 27 GLU A 51 172.27 -53.72 REMARK 500 27 SER A 112 111.98 -175.60 REMARK 500 28 LYS A 4 -52.43 -132.90 REMARK 500 28 SER A 9 88.46 -165.25 REMARK 500 28 PRO A 110 77.06 -69.73 REMARK 500 28 SER A 112 27.26 -147.81 REMARK 500 28 GLN A 113 148.68 -171.56 REMARK 500 28 GLN A 115 -74.51 -64.08 REMARK 500 29 ARG A 8 -64.90 -142.28 REMARK 500 29 SER A 9 -176.58 59.82 REMARK 500 29 GLN A 115 -68.56 -141.37 REMARK 500 30 ASN A 50 -170.34 -61.07 REMARK 500 30 GLU A 51 174.12 -59.07 REMARK 500 30 PRO A 110 75.13 -69.73 REMARK 500 30 GLN A 113 -69.12 72.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6928 RELATED DB: BMRB REMARK 900 ASSIGNMENT OF RESONANCES REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 THE AUTHORS STATE THAT THE POLYPEPTIDE PURIFIED FROM E.COLI REMARK 999 STARTS WITH AMINO ACID NUMBER 2 OF THE COMPLETE PROTEIN REMARK 999 BECAUSE THERE IS IN VIVO PROCESSING OF THE RESIDUE MET1. REMARK 999 THIS HAS BEEN VERIFIED BY MASS SPECTROMETRY OF THE REMARK 999 DIFFERENTLY LABELED SAMPLES PRODUCED. DBREF 2HW0 A 2 116 UNP Q77NR8 Q77NR8_PCV2 2 116 SEQRES 1 A 115 PRO SER LYS LYS ASN GLY ARG SER GLY PRO GLN PRO HIS SEQRES 2 A 115 LYS ARG TRP VAL PHE THR LEU ASN ASN PRO SER GLU ASP SEQRES 3 A 115 GLU ARG LYS LYS ILE ARG ASP LEU PRO ILE SER LEU PHE SEQRES 4 A 115 ASP TYR PHE ILE VAL GLY GLU GLU GLY ASN GLU GLU GLY SEQRES 5 A 115 ARG THR PRO HIS LEU GLN GLY PHE ALA ASN PHE VAL LYS SEQRES 6 A 115 LYS GLN THR PHE ASN LYS VAL LYS TRP TYR LEU GLY ALA SEQRES 7 A 115 ARG CYS HIS ILE GLU LYS ALA LYS GLY THR ASP GLN GLN SEQRES 8 A 115 ASN LYS GLU TYR CYS SER LYS GLU GLY ASN LEU LEU MET SEQRES 9 A 115 GLU CYS GLY ALA PRO ARG SER GLN GLY GLN ARG HELIX 1 1 SER A 25 ASP A 34 1 10 HELIX 2 2 PRO A 36 SER A 38 5 3 HELIX 3 3 THR A 69 GLY A 78 1 10 HELIX 4 4 THR A 89 LYS A 99 1 11 SHEET 1 A 5 HIS A 82 GLU A 84 0 SHEET 2 A 5 TRP A 17 ASN A 22 -1 N VAL A 18 O GLU A 84 SHEET 3 A 5 HIS A 57 PHE A 64 -1 O LEU A 58 N LEU A 21 SHEET 4 A 5 PHE A 40 GLU A 48 -1 N TYR A 42 O ASN A 63 SHEET 5 A 5 LEU A 103 GLY A 108 -1 O CYS A 107 N PHE A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 197 0 0 4 5 0 0 6 0 0 0 9 END