HEADER STRUCTURAL PROTEIN 05-JUL-06 2HKQ TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN EB1 IN COMPLEX TITLE 2 WITH THE CAP-GLY DOMAIN OF HUMAN DYNACTIN-1 (P150-GLUED) CAVEAT 2HKQ CHIRALITY ERRORS AT CA CENTER OF VAL A 254 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: APC-BINDING PROTEIN EB1, END-BINDING PROTEIN 1, EB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DYNACTIN-1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: CAP-GLY DOMAIN; COMPND 11 SYNONYM: 150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE, DP-150, DAP-150, COMPND 12 P150-GLUED, P135; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPRE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: DCTN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MICROTUBULE BINDING, DYNACTIN, CYTOSKELETON ASSOCIATED PROTEIN, KEYWDS 2 P150GLUED, EB1, +TIP PROTEIN COMPLEX STRUCTURE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HONNAPPA,F.K.WINKLER,M.O.STEINMETZ REVDAT 3 13-JUL-11 2HKQ 1 VERSN REVDAT 2 24-FEB-09 2HKQ 1 VERSN REVDAT 1 12-SEP-06 2HKQ 0 JRNL AUTH S.HONNAPPA,O.OKHRIMENKO,R.JAUSSI,H.JAWHARI,I.JELESAROV, JRNL AUTH 2 F.K.WINKLER,M.O.STEINMETZ JRNL TITL KEY INTERACTION MODES OF DYNAMIC +TIP NETWORKS. JRNL REF MOL.CELL V. 23 663 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16949363 JRNL DOI 10.1016/J.MOLCEL.2006.07.013 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 11978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 616 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1089 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1465 ; 1.440 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 8.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;34.192 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;12.907 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 164 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 819 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 476 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 769 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 674 ; 1.995 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 3.137 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 451 ; 4.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 398 ; 6.821 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2731 1.9286 2.0010 REMARK 3 T TENSOR REMARK 3 T11: -0.1647 T22: -0.0588 REMARK 3 T33: -0.1659 T12: 0.0292 REMARK 3 T13: 0.0457 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.0549 L22: 6.5902 REMARK 3 L33: 1.4422 L12: 0.3483 REMARK 3 L13: 0.2365 L23: -0.7654 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0526 S13: -0.0479 REMARK 3 S21: -0.1563 S22: -0.1414 S23: 0.0885 REMARK 3 S31: 0.2498 S32: -0.0096 S33: 0.1349 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1514 -2.0398 13.0950 REMARK 3 T TENSOR REMARK 3 T11: -0.1195 T22: -0.1051 REMARK 3 T33: -0.1239 T12: -0.0102 REMARK 3 T13: -0.0073 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 6.3020 L22: 1.4127 REMARK 3 L33: 4.3439 L12: 1.2565 REMARK 3 L13: -0.2581 L23: 0.3694 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: 0.0064 S13: 0.2788 REMARK 3 S21: 0.0251 S22: -0.0398 S23: 0.2559 REMARK 3 S31: -0.0122 S32: -0.3711 S33: -0.0316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB038458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 42.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M TRISODIUM CITRATE, 0.1M HEPES REMARK 280 BUFFER, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.57800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.79850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.57800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.79850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSAMBLY IS DIMER OF EB1-C (CHAIN A) BINDS TWO REMARK 300 MONOMERS OF CAP-GLY DOMAIN(CHAIN B) THE BIOLOGICAL ASSEMBLY IS REMARK 300 GENERATED FROM THE HETERODIMER IN ASYMMETRIC UNIT BY THE OPERATION: REMARK 300 -X+1, Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.15600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 ASP A 191 REMARK 465 PRO A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 465 GLY A 260 REMARK 465 PRO A 261 REMARK 465 GLN A 262 REMARK 465 GLU A 263 REMARK 465 GLU A 264 REMARK 465 GLN A 265 REMARK 465 GLU A 266 REMARK 465 GLU A 267 REMARK 465 TYR A 268 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 HIS B 17 REMARK 465 MET B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 GLU B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 ARG B 25 REMARK 465 GLU B 98 REMARK 465 ASP B 99 REMARK 465 GLY B 100 REMARK 465 ALA B 101 REMARK 465 ASP B 102 REMARK 465 THR B 103 REMARK 465 THR B 104 REMARK 465 SER B 105 REMARK 465 PRO B 106 REMARK 465 GLU B 107 REMARK 465 THR B 108 REMARK 465 PRO B 109 REMARK 465 ASP B 110 REMARK 465 SER B 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 82 C GLU B 83 N -0.346 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 37 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 LYS B 38 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 GLY B 39 C - N - CA ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 250 -75.69 -95.24 REMARK 500 VAL A 254 45.48 123.09 REMARK 500 ALA B 65 62.53 -69.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 254 -32.3 L D WRONG HAND REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TXQ RELATED DB: PDB REMARK 900 RELATED ID: 2HKN RELATED DB: PDB REMARK 900 RELATED ID: 2HL3 RELATED DB: PDB REMARK 900 RELATED ID: 2HL5 RELATED DB: PDB DBREF 2HKQ A 191 268 UNP Q15691 MARE1_HUMAN 188 267 DBREF 2HKQ B 18 111 UNP Q14203 DYNA_HUMAN 15 111 SEQADV 2HKQ GLY A 189 UNP Q15691 CLONING ARTIFACT SEQADV 2HKQ SER A 190 UNP Q15691 CLONING ARTIFACT SEQADV 2HKQ GLY B 15 UNP Q14203 CLONING ARTIFACT SEQADV 2HKQ SER B 16 UNP Q14203 CLONING ARTIFACT SEQADV 2HKQ HIS B 17 UNP Q14203 CLONING ARTIFACT SEQRES 1 A 80 GLY SER ASP GLU ALA ALA GLU LEU MET GLN GLN VAL ASN SEQRES 2 A 80 VAL LEU LYS LEU THR VAL GLU ASP LEU GLU LYS GLU ARG SEQRES 3 A 80 ASP PHE TYR PHE GLY LYS LEU ARG ASN ILE GLU LEU ILE SEQRES 4 A 80 CYS GLN GLU ASN GLU GLY GLU ASN ASP PRO VAL LEU GLN SEQRES 5 A 80 ARG ILE VAL ASP ILE LEU TYR ALA THR ASP GLU GLY PHE SEQRES 6 A 80 VAL ILE PRO ASP GLU GLY GLY PRO GLN GLU GLU GLN GLU SEQRES 7 A 80 GLU TYR SEQRES 1 B 97 GLY SER HIS MET SER ALA GLU ALA SER ALA ARG PRO LEU SEQRES 2 B 97 ARG VAL GLY SER ARG VAL GLU VAL ILE GLY LYS GLY HIS SEQRES 3 B 97 ARG GLY THR VAL ALA TYR VAL GLY ALA THR LEU PHE ALA SEQRES 4 B 97 THR GLY LYS TRP VAL GLY VAL ILE LEU ASP GLU ALA LYS SEQRES 5 B 97 GLY LYS ASN ASP GLY THR VAL GLN GLY ARG LYS TYR PHE SEQRES 6 B 97 THR CYS ASP GLU GLY HIS GLY ILE PHE VAL ARG GLN SER SEQRES 7 B 97 GLN ILE GLN VAL PHE GLU ASP GLY ALA ASP THR THR SER SEQRES 8 B 97 PRO GLU THR PRO ASP SER FORMUL 3 HOH *74(H2 O) HELIX 1 1 GLU A 192 ASN A 231 1 40 HELIX 2 2 ASP A 236 TYR A 247 1 12 HELIX 3 3 ARG B 90 SER B 92 5 3 SHEET 1 A 5 GLY B 86 VAL B 89 0 SHEET 2 A 5 LYS B 56 LEU B 62 -1 N VAL B 58 O VAL B 89 SHEET 3 A 5 ARG B 41 ALA B 49 -1 N ALA B 45 O GLY B 59 SHEET 4 A 5 ARG B 32 VAL B 35 -1 N VAL B 33 O GLY B 42 SHEET 5 A 5 ILE B 94 VAL B 96 -1 O GLN B 95 N GLU B 34 SHEET 1 B 2 THR B 72 VAL B 73 0 SHEET 2 B 2 ARG B 76 LYS B 77 -1 O ARG B 76 N VAL B 73 CISPEP 1 PHE A 253 VAL A 254 0 -7.42 CISPEP 2 ILE B 36 GLY B 37 0 -8.26 CRYST1 53.156 79.597 38.935 90.00 109.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018813 0.000000 0.006585 0.00000 SCALE2 0.000000 0.012563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027212 0.00000 MASTER 404 0 0 3 7 0 0 6 0 0 0 15 END