HEADER IMMUNE SYSTEM 04-JUL-06 2HKH TITLE CRYSTAL STRUCTURE OF THE FAB M75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN LIGHT CHAIN FAB FRAGMENT; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN FAB FRAGMENT; COMPND 6 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: HYBRIDOMA CELLS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 CELL: HYBRIDOMA CELLS KEYWDS IMMUNOGLOBULIN, FAB FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.KRAL,P.MADER,R.STOURACOVA,M.FABRY,J.SEDLACEK,J.BRYNDA REVDAT 6 18-OCT-17 2HKH 1 REMARK REVDAT 5 13-JUL-11 2HKH 1 VERSN REVDAT 4 09-JUN-09 2HKH 1 REVDAT REVDAT 3 24-FEB-09 2HKH 1 VERSN REVDAT 2 02-DEC-08 2HKH 1 JRNL REVDAT 1 13-NOV-07 2HKH 0 JRNL AUTH V.KRAL,P.MADER,R.COLLARD,M.FABRY,M.HOREJSI,P.REZACOVA, JRNL AUTH 2 M.KOZISEK,J.ZAVADA,J.SEDLACEK,L.RULISEK,J.BRYNDA JRNL TITL STABILIZATION OF ANTIBODY STRUCTURE UPON ASSOCIATION TO A JRNL TITL 2 HUMAN CARBONIC ANHYDRASE IX EPITOPE STUDIED BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY, MICROCALORIMETRY, AND MOLECULAR DYNAMICS JRNL TITL 4 SIMULATIONS. JRNL REF PROTEINS V. 71 1275 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18041760 JRNL DOI 10.1002/PROT.21821 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.8 REMARK 3 NUMBER OF REFLECTIONS : 15795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : -0.52000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : -0.22000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.633 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3365 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4586 ; 1.547 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ;10.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;37.362 ;24.328 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;19.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;23.045 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2539 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1506 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2227 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2165 ; 0.497 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3464 ; 0.861 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 1.328 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1122 ; 2.001 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 112 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5160 8.1694 -13.0047 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: -0.0874 REMARK 3 T33: -0.0980 T12: -0.0163 REMARK 3 T13: 0.0096 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.4806 L22: 2.4181 REMARK 3 L33: 2.0131 L12: -1.5526 REMARK 3 L13: 0.9973 L23: -0.6844 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: -0.0993 S13: -0.0187 REMARK 3 S21: -0.0927 S22: -0.0198 S23: -0.0652 REMARK 3 S31: 0.0990 S32: -0.0594 S33: -0.0573 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 113 L 219 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5140 -13.4169 16.0498 REMARK 3 T TENSOR REMARK 3 T11: -0.0994 T22: -0.1068 REMARK 3 T33: -0.0336 T12: -0.0048 REMARK 3 T13: -0.0306 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.0043 L22: 0.7120 REMARK 3 L33: 3.7639 L12: 0.8533 REMARK 3 L13: -2.0595 L23: -1.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.1564 S13: -0.0634 REMARK 3 S21: 0.0264 S22: -0.0111 S23: -0.0720 REMARK 3 S31: 0.0641 S32: -0.1307 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 118 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6630 21.7105 0.4005 REMARK 3 T TENSOR REMARK 3 T11: -0.1053 T22: -0.0098 REMARK 3 T33: -0.0315 T12: -0.0169 REMARK 3 T13: 0.0267 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.3385 L22: 2.9806 REMARK 3 L33: 3.7068 L12: -1.5129 REMARK 3 L13: 1.6638 L23: -1.2154 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.2231 S13: 0.1592 REMARK 3 S21: -0.1312 S22: -0.0710 S23: -0.1613 REMARK 3 S31: -0.2420 S32: 0.0848 S33: 0.0587 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 119 H 218 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9371 -0.3874 23.5027 REMARK 3 T TENSOR REMARK 3 T11: -0.1160 T22: -0.0806 REMARK 3 T33: -0.0411 T12: -0.0695 REMARK 3 T13: -0.0479 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.5835 L22: 3.4312 REMARK 3 L33: 2.5233 L12: -2.2759 REMARK 3 L13: -0.3602 L23: 0.3556 REMARK 3 S TENSOR REMARK 3 S11: -0.1576 S12: -0.0567 S13: 0.0313 REMARK 3 S21: 0.2408 S22: 0.1662 S23: -0.2245 REMARK 3 S31: 0.0119 S32: 0.1208 S33: -0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 4 REMARK 4 2HKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : 0.30400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1NBV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 100 MM TRIS, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 SER H 162 REMARK 465 GLY H 163 REMARK 465 SER H 164 REMARK 465 LEU H 165 REMARK 465 SER H 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER H 27 CB OG REMARK 470 THR H 28 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -52.23 79.83 REMARK 500 SER L 57 12.81 -146.28 REMARK 500 ILE L 149 134.88 -172.42 REMARK 500 LYS L 204 -38.98 -27.14 REMARK 500 LYS H 15 -5.90 78.05 REMARK 500 SER H 25 -128.78 -98.23 REMARK 500 SER H 27 -113.68 74.25 REMARK 500 THR H 28 43.14 163.15 REMARK 500 ARG H 69 -38.95 -133.91 REMARK 500 ASN H 103 26.45 -153.59 REMARK 500 PHE H 106 29.94 45.70 REMARK 500 SER H 155 83.14 95.62 REMARK 500 SER H 178 68.50 29.62 REMARK 500 SER H 192 -8.32 -58.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL H 148 LYS H 149 -149.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HKF RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT THE TIME OF PROCESSING, A UNP REFERENCE SEQUENCE REMARK 999 WAS NOT AVAILABLE FOR IMMUNOGLOBULIN LIGHT CHAIN FAB REMARK 999 FRAGMENT OR IMMUNOGLOBULIN HEAVY CHAIN FAB FRAGMENT. DBREF 2HKH L 1 219 PDB 2HKH 2HKH 1 219 DBREF 2HKH H 1 218 PDB 2HKH 2HKH 1 218 SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO ASN LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 PHE CYS SER GLN SER THR HIS VAL PRO PHE THR PHE GLY SEQRES 9 L 219 SER GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 218 GLU VAL GLN VAL VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 218 PRO LYS GLY SER LEU LYS LEU SER CYS VAL VAL SER GLY SEQRES 3 H 218 SER THR LEU ASN ASN TYR ALA MET ASN TRP VAL ARG GLN SEQRES 4 H 218 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE ARG SEQRES 5 H 218 SER LYS SER ASN ASN TYR ALA THR TYR TYR ALA ASP SER SEQRES 6 H 218 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 H 218 SER MET ILE TYR LEU GLN MET ASN ASN LEU LYS THR GLU SEQRES 8 H 218 ASP THR ALA MET TYR TYR CYS VAL THR TYR GLY ASN HIS SEQRES 9 H 218 PRO PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 218 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 218 ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 218 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL SEQRES 13 H 218 THR VAL THR TRP ASN SER GLY SER LEU SER SER SER VAL SEQRES 14 H 218 HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR SEQRES 15 H 218 MET SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 218 SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SEQRES 17 H 218 SER THR THR VAL ASP LYS LYS LEU GLU PRO HET GOL H 219 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *96(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 1 7 HELIX 3 3 LYS L 188 GLU L 192 1 5 HELIX 4 4 ASN L 217 CYS L 219 5 3 HELIX 5 5 SER H 53 ASN H 57 5 5 HELIX 6 6 LYS H 89 THR H 93 5 5 HELIX 7 7 SER H 192 TRP H 194 5 3 HELIX 8 8 PRO H 206 SER H 209 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 107 ILE L 111 1 O GLU L 110 N VAL L 13 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 B 6 ASN L 50 TYR L 54 -1 O ASN L 50 N LEU L 42 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 107 ILE L 111 1 O GLU L 110 N VAL L 13 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O ASN L 142 N THR L 119 SHEET 3 D 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N SER L 167 O SER L 181 SHEET 1 E 4 SER L 158 ARG L 160 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 HIS L 203 -1 O GLU L 200 N LYS L 152 SHEET 4 E 4 SER L 206 ASN L 215 -1 O ILE L 210 N ALA L 201 SHEET 1 F 4 VAL H 5 SER H 7 0 SHEET 2 F 4 LEU H 18 VAL H 23 -1 O SER H 21 N SER H 7 SHEET 3 F 4 MET H 80 MET H 85 -1 O MET H 85 N LEU H 18 SHEET 4 F 4 PHE H 70 ASP H 75 -1 N THR H 71 O GLN H 84 SHEET 1 G 6 GLY H 10 VAL H 12 0 SHEET 2 G 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 G 6 ALA H 94 THR H 100 -1 N TYR H 96 O THR H 113 SHEET 4 G 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 97 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 60 TYR H 62 -1 O TYR H 61 N ARG H 50 SHEET 1 H 4 GLY H 10 VAL H 12 0 SHEET 2 H 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 H 4 ALA H 94 THR H 100 -1 N TYR H 96 O THR H 113 SHEET 4 H 4 TYR H 108 TRP H 109 -1 O TYR H 108 N THR H 100 SHEET 1 I 4 SER H 126 LEU H 130 0 SHEET 2 I 4 SER H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 I 4 LEU H 180 PRO H 190 -1 O MET H 183 N VAL H 148 SHEET 4 I 4 VAL H 169 GLN H 177 -1 N GLN H 177 O LEU H 180 SHEET 1 J 3 THR H 157 ASN H 161 0 SHEET 2 J 3 THR H 200 HIS H 205 -1 O SER H 202 N THR H 159 SHEET 3 J 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.02 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.02 SSBOND 3 CYS L 219 CYS H 134 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 98 1555 1555 2.03 SSBOND 5 CYS H 146 CYS H 201 1555 1555 2.03 CISPEP 1 THR L 7 PRO L 8 0 3.55 CISPEP 2 VAL L 99 PRO L 100 0 2.38 CISPEP 3 TYR L 145 PRO L 146 0 0.79 CISPEP 4 PRO H 132 GLY H 133 0 -6.28 CISPEP 5 PHE H 152 PRO H 153 0 -1.74 CISPEP 6 TRP H 194 PRO H 195 0 7.98 SITE 1 AC1 5 LEU H 11 ALA H 120 LYS H 121 THR H 122 SITE 2 AC1 5 PRO H 153 CRYST1 40.982 43.154 57.370 85.30 88.45 84.29 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024401 -0.002439 -0.000468 0.00000 SCALE2 0.000000 0.023288 -0.001861 0.00000 SCALE3 0.000000 0.000000 0.017493 0.00000 MASTER 378 0 1 8 43 0 2 6 0 0 0 34 END