HEADER STRUCTURAL GENOMICS 30-JUN-06 2HJQ TITLE NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YQBF, NORTHEAST TITLE 2 STRUCTURAL GENOMICS TARGET SR449 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YQBF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YQBF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (LAMBDA DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS TWO-DOMAIN, NMR STRUCTURE, BSU26130, YQBF, NESG, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.DING,T.A.RAMELOT,J.R.CORT,D.WANG,H.JANJUA,K.CUNNINGHAM,L.- AUTHOR 2 C.MA,R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG) REVDAT 2 24-FEB-09 2HJQ 1 VERSN REVDAT 1 05-JUN-07 2HJQ 0 JRNL AUTH J.R.CORT,T.A.RAMELOT,R.XIAO,G.V.T.SWAPNA, JRNL AUTH 2 G.M.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YQBF, JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS TARGET SR449 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.15.0, CNS 1.1 REMARK 3 AUTHORS : C.D. SCHWIETERS, J.J. KUSZEWSKI, N. TJANDRA, REMARK 3 G.M. CLORE (XPLOR-NIH), A. BRUNGER, G. L .WARREN REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB038422. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM YQBF, U-N15, 13C; 20 MM REMARK 210 NH4OAC, 100MM NACL, 5MM CACL2, REMARK 210 10MM DTT, 0.02% NAN3, 95% H2O, REMARK 210 5% D2O; 0.7MM YQBF, U-N15, 5% REMARK 210 13C; 20 MM NH4OAC, 100MM NACL, REMARK 210 5MM CACL2, 10MM DTT, 0.02% REMARK 210 NAN3, 95% H2O, 5% D2O; 1.3MM REMARK 210 YQBF, U-N15, 13C; 20 MM REMARK 210 NH4OAC, 100MM NACL, 5MM CACL2, REMARK 210 10MM DTT, 0.02% NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 4D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, NMRPIPE LINUZ9, REMARK 210 VNMR 6.1C REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, CNS WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURES ARE BASED ON A TOTAL OF 1719 RESTRAINTS. REMARK 210 1536 ARE NOE-DERIVED; INTRA-RESIDUE [I=J] = 268; SEQUENTIAL REMARK 210 [(I-J)=1] = 437 MEDIUM RANGE [1<(I-J)<5] = 387; LONG RANGE [(I REMARK 210 -J)>=5] = 444; HYDROGEN BOND RESTRAINTS = 42 (2 PER H-BOND); REMARK 210 NUMBER OF NOE RESTRAINTS PER RESIDUE = 16.3 (RESIDES 2-47,57- REMARK 210 104); DIHEDRAL-ANGLE RESTRAINTS = 141 (70 PHI, 71 PSI); TOTAL REMARK 210 NUMBER OF RESTRAINTS PER RESIDUE = 18.3 (RESIDES 2-47,57-104); REMARK 210 NUMBER OF LONG RANGE RESTRAINTS PER RESIDUE = 4.7 NUMBER OF REMARK 210 STRUCTURES COMPUTED = 20; NUMBER OF STRUCTURES USED = 20. REMARK 210 AVERAGE DISTANCE VIOLATIONS >0.1 ANG = 0; AVERAGE RMS DISTANCE REMARK 210 VIOLATION / CONSTRAINT = 0.06 ANGSTROMS.; MAXIMUM DISTANCE REMARK 210 VIOLATION 0.05 ANG. AVERAGE DIHEDRAL ANGLE VIOLATIONS: >10 DEG REMARK 210 = 0 MAX DIHEDRAL ANGLE VIOLATION = 0.5 DEG. AVERAGE RMS ANGLE REMARK 210 VIOLATION / CONSTRAINT = 0.003 DEG. RMSD VALUES: BACKBONE REMARK 210 ATOMS (N,C,C', RESIDUES 2-47 = 0.5 ANG; ALL HEAVY ATOMS = 0.9 REMARK 210 ANG (RESIDUES 2-47) RMSD VALUES: BACKBONE ATOMS (N,C,C', REMARK 210 RESIDUES 2-47 = 0.7 ANG; ALL HEAVY ATOMS = 1.3 ANG (RESIDUES REMARK 210 57-98) PROCHECK (RESIDUES 2-47,57-104): MOST FAVORED REGIONS = REMARK 210 89% ADDITIONAL ALLOWED REGIONS = 10%; GENEROUSLY ALLOWED REMARK 210 REGIONS = 0%; DISALLOWED REGIONS = 1%. 6 NON-NATIVE N-TERMINAL REMARK 210 RESIDUES (MAGDPL) AND 8 C-TERMINAL RESDIUES, INLUDING THE HIS REMARK 210 TAG, (LEHHHHHH) WERE INCLUDED IN THE STRUCTURE CALCULATION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 10 -41.76 -139.90 REMARK 500 1 MET A 15 -79.73 65.71 REMARK 500 1 PRO A 39 44.84 -78.18 REMARK 500 1 ASP A 52 -156.54 -112.18 REMARK 500 1 ILE A 55 27.90 -169.65 REMARK 500 1 ASN A 56 109.43 -160.54 REMARK 500 1 LEU A 104 -58.57 -126.02 REMARK 500 1 HIS A 110 62.67 -153.31 REMARK 500 2 LYS A 10 -58.07 -175.61 REMARK 500 2 MET A 15 -86.93 62.78 REMARK 500 2 ASN A 48 146.90 74.45 REMARK 500 2 ASP A 53 81.05 63.66 REMARK 500 2 PRO A 54 37.72 -77.41 REMARK 500 2 ILE A 55 24.52 -145.06 REMARK 500 2 MET A 65 -169.49 -120.00 REMARK 500 2 ASN A 66 -166.35 -100.14 REMARK 500 2 ASN A 80 108.96 70.45 REMARK 500 2 HIS A 107 110.36 70.81 REMARK 500 2 HIS A 109 -21.59 -167.33 REMARK 500 2 HIS A 110 109.49 77.24 REMARK 500 3 LYS A 10 -59.64 -160.99 REMARK 500 3 MET A 15 -1.52 71.38 REMARK 500 3 PRO A 39 34.48 -78.30 REMARK 500 3 GLN A 50 -149.82 -132.57 REMARK 500 3 PRO A 81 73.90 -69.05 REMARK 500 3 LYS A 101 -67.51 -93.22 REMARK 500 3 HIS A 106 23.82 -141.53 REMARK 500 4 LYS A 10 -55.49 -179.03 REMARK 500 4 MET A 15 -85.84 64.48 REMARK 500 4 PRO A 39 29.70 -75.76 REMARK 500 4 ILE A 55 29.87 163.15 REMARK 500 4 ASN A 56 89.48 -158.33 REMARK 500 4 PRO A 81 43.89 -83.98 REMARK 500 4 HIS A 110 -84.40 -176.39 REMARK 500 5 LYS A 10 -48.08 -172.68 REMARK 500 5 MET A 15 -74.22 66.35 REMARK 500 5 ASN A 48 -37.66 -133.68 REMARK 500 5 ASP A 52 -69.15 72.56 REMARK 500 5 PRO A 54 32.08 -99.55 REMARK 500 5 ILE A 55 78.67 -178.70 REMARK 500 5 ASN A 56 86.39 -170.15 REMARK 500 5 ASN A 80 137.64 72.38 REMARK 500 5 LYS A 85 -65.04 -108.76 REMARK 500 5 HIS A 109 20.74 -141.63 REMARK 500 6 LYS A 10 -37.12 73.78 REMARK 500 6 MET A 15 -87.19 63.64 REMARK 500 6 TYR A 40 25.30 -153.22 REMARK 500 6 GLN A 50 154.66 71.00 REMARK 500 6 ASP A 52 91.75 65.67 REMARK 500 6 PRO A 54 41.88 -74.90 REMARK 500 6 ILE A 55 29.98 179.87 REMARK 500 6 PRO A 81 36.76 -73.67 REMARK 500 6 LEU A 104 -72.03 -77.80 REMARK 500 6 GLU A 105 -178.46 63.49 REMARK 500 6 HIS A 108 66.01 -179.72 REMARK 500 6 HIS A 110 -36.91 -177.48 REMARK 500 7 LYS A 10 -68.79 -168.01 REMARK 500 7 ASP A 52 90.89 57.51 REMARK 500 7 ASN A 56 83.51 -153.10 REMARK 500 7 PRO A 81 29.52 -79.61 REMARK 500 7 GLU A 103 91.52 -162.54 REMARK 500 8 LYS A 10 -65.83 -176.50 REMARK 500 8 MET A 15 -86.53 62.73 REMARK 500 8 PRO A 39 40.67 -76.58 REMARK 500 8 TYR A 40 25.63 -149.01 REMARK 500 8 ASP A 52 136.26 78.44 REMARK 500 8 PRO A 54 38.22 -73.75 REMARK 500 8 ILE A 55 30.29 -174.81 REMARK 500 8 ASN A 66 -157.51 -113.78 REMARK 500 8 PRO A 81 49.46 -80.23 REMARK 500 8 ASN A 100 32.45 -89.77 REMARK 500 8 GLU A 103 84.02 68.03 REMARK 500 9 LYS A 10 -51.02 71.39 REMARK 500 9 PRO A 54 -177.10 -66.58 REMARK 500 9 ILE A 55 25.61 49.02 REMARK 500 9 MET A 65 -158.17 59.74 REMARK 500 9 LYS A 85 -61.92 -92.69 REMARK 500 9 HIS A 106 88.82 41.88 REMARK 500 9 HIS A 110 100.22 71.78 REMARK 500 10 LYS A 8 30.56 -92.06 REMARK 500 10 LYS A 10 -44.45 -160.13 REMARK 500 10 PRO A 39 41.34 -75.32 REMARK 500 10 GLN A 50 79.56 -112.19 REMARK 500 10 ASP A 53 84.26 56.37 REMARK 500 10 ILE A 55 21.20 -171.33 REMARK 500 10 MET A 65 -175.40 62.13 REMARK 500 10 LYS A 101 -156.66 -103.50 REMARK 500 10 HIS A 106 54.77 -95.22 REMARK 500 10 HIS A 107 120.93 69.98 REMARK 500 10 HIS A 110 -44.66 71.60 REMARK 500 11 LYS A 10 -46.18 -154.68 REMARK 500 11 TYR A 12 116.45 -162.41 REMARK 500 11 MET A 15 -75.31 65.41 REMARK 500 11 ALA A 21 109.49 -55.29 REMARK 500 11 PRO A 39 39.47 -76.57 REMARK 500 11 ASN A 48 79.41 63.33 REMARK 500 11 PRO A 54 88.64 -69.86 REMARK 500 11 ILE A 55 31.30 -174.89 REMARK 500 11 MET A 65 134.55 68.75 REMARK 500 11 HIS A 109 -71.44 -146.10 REMARK 500 11 HIS A 110 131.92 174.58 REMARK 500 12 LYS A 10 -49.56 -164.32 REMARK 500 12 MET A 15 -80.36 65.70 REMARK 500 12 ALA A 21 109.90 -59.66 REMARK 500 12 PRO A 39 11.66 -69.42 REMARK 500 12 ASP A 52 87.91 51.91 REMARK 500 12 ILE A 55 26.15 179.66 REMARK 500 12 ASN A 56 105.30 -161.88 REMARK 500 12 HIS A 106 98.36 -68.21 REMARK 500 12 HIS A 107 49.71 39.40 REMARK 500 12 HIS A 108 137.92 69.98 REMARK 500 13 LYS A 10 -45.66 -169.38 REMARK 500 13 MET A 15 -80.82 65.17 REMARK 500 13 ASN A 49 -41.10 -156.51 REMARK 500 13 PRO A 54 57.25 -96.04 REMARK 500 13 ILE A 55 35.22 -174.94 REMARK 500 13 ASN A 56 82.41 -156.72 REMARK 500 13 ASN A 80 105.64 67.91 REMARK 500 13 PRO A 81 34.17 -84.20 REMARK 500 13 HIS A 106 80.93 -161.95 REMARK 500 14 LYS A 10 -52.89 73.92 REMARK 500 14 MET A 15 -77.57 65.41 REMARK 500 14 PRO A 54 46.94 -77.71 REMARK 500 14 ILE A 55 22.38 -170.70 REMARK 500 14 GLU A 103 -156.85 66.68 REMARK 500 14 HIS A 106 118.36 -162.29 REMARK 500 14 HIS A 108 -37.92 78.84 REMARK 500 15 LYS A 10 -46.94 -170.12 REMARK 500 15 MET A 15 -95.29 64.52 REMARK 500 15 ASN A 48 -53.99 -130.90 REMARK 500 15 ILE A 55 26.67 -179.47 REMARK 500 15 ASN A 56 98.09 -163.78 REMARK 500 15 PRO A 81 84.63 -44.95 REMARK 500 16 LYS A 10 -52.08 -155.37 REMARK 500 16 MET A 15 -81.02 62.80 REMARK 500 16 ILE A 55 61.20 38.78 REMARK 500 16 ASN A 56 87.52 -174.43 REMARK 500 16 GLU A 105 -160.75 -100.98 REMARK 500 17 LYS A 10 -66.68 -171.72 REMARK 500 17 MET A 15 -73.85 67.88 REMARK 500 17 PRO A 39 23.74 -79.92 REMARK 500 18 LYS A 10 -53.75 73.60 REMARK 500 18 ASN A 49 -176.92 64.29 REMARK 500 18 ILE A 55 26.68 178.32 REMARK 500 18 ASN A 56 38.22 -142.48 REMARK 500 18 ASN A 80 134.12 68.08 REMARK 500 18 LEU A 104 -89.01 -126.50 REMARK 500 18 HIS A 110 128.73 -171.53 REMARK 500 19 LYS A 10 -56.00 -176.21 REMARK 500 19 MET A 15 -75.25 65.66 REMARK 500 19 PRO A 39 28.07 -71.81 REMARK 500 19 ASN A 49 -161.50 59.66 REMARK 500 19 GLN A 50 -60.85 -145.02 REMARK 500 19 LYS A 51 32.78 -80.41 REMARK 500 19 MET A 65 -166.88 61.77 REMARK 500 19 LYS A 85 -39.21 -145.20 REMARK 500 19 LYS A 101 -11.42 -147.76 REMARK 500 19 HIS A 109 -83.12 -158.66 REMARK 500 20 LYS A 10 -55.62 -154.25 REMARK 500 20 MET A 15 -91.37 60.73 REMARK 500 20 PRO A 39 44.58 -78.16 REMARK 500 20 ASP A 53 84.62 57.84 REMARK 500 20 PRO A 81 48.68 -84.39 REMARK 500 20 ASN A 100 71.82 -104.73 REMARK 500 20 GLU A 103 37.69 -98.13 REMARK 500 20 HIS A 106 71.23 -102.86 REMARK 500 20 HIS A 108 157.84 59.01 REMARK 500 20 HIS A 110 -80.66 -99.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR449 RELATED DB: TARGETDB DBREF 2HJQ A 1 103 UNP P45922 YQBF_BACSU 1 103 SEQADV 2HJQ LEU A 104 UNP P45922 CLONING ARTIFACT SEQADV 2HJQ GLU A 105 UNP P45922 CLONING ARTIFACT SEQADV 2HJQ HIS A 106 UNP P45922 EXPRESSION TAG SEQADV 2HJQ HIS A 107 UNP P45922 EXPRESSION TAG SEQADV 2HJQ HIS A 108 UNP P45922 EXPRESSION TAG SEQADV 2HJQ HIS A 109 UNP P45922 EXPRESSION TAG SEQADV 2HJQ HIS A 110 UNP P45922 EXPRESSION TAG SEQADV 2HJQ HIS A 111 UNP P45922 EXPRESSION TAG SEQRES 1 A 111 MET PHE THR ALA LYS LEU ILE LYS GLY LYS THR TYR ASN SEQRES 2 A 111 VAL MET GLY ILE THR PHE ARG ALA GLY VAL SER GLN THR SEQRES 3 A 111 VAL PRO LYS LYS LEU TYR GLU TYR LEU ASN GLU ASN PRO SEQRES 4 A 111 TYR PHE ILE LEU THR GLN GLU LEU ASN ASN GLN LYS ASP SEQRES 5 A 111 ASP PRO ILE ASN TYR THR GLU SER GLU LEU LYS GLY MET SEQRES 6 A 111 ASN LYS ALA GLU HIS GLU SER ILE ILE SER ASN LEU GLY SEQRES 7 A 111 ARG ASN PRO SER ASP PHE LYS ASN ALA ASP GLU ARG ILE SEQRES 8 A 111 ALA TYR ILE LEU LYS GLN ILE ASP ASN LYS GLY GLU LEU SEQRES 9 A 111 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 28 ASN A 38 1 11 HELIX 2 2 THR A 58 GLY A 64 1 7 HELIX 3 3 ASN A 66 GLY A 78 1 13 HELIX 4 4 ASN A 86 ASP A 99 1 14 SHEET 1 A 3 SER A 24 VAL A 27 0 SHEET 2 A 3 PHE A 2 LEU A 6 -1 N ALA A 4 O GLN A 25 SHEET 3 A 3 PHE A 41 GLN A 45 -1 O ILE A 42 N LYS A 5 SHEET 1 B 2 THR A 11 VAL A 14 0 SHEET 2 B 2 ILE A 17 ARG A 20 -1 O PHE A 19 N TYR A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 270 0 0 4 5 0 0 6 0 0 0 9 END