HEADER 29-JUN-06 2HIC TITLE RECOGNITION MODEL FOR CDK7-CDK2 TRANS-PHOSPHORYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN DEPENDENT KINASE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYCLIN DEPENDENT KINASE 7; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 10 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM KEYWDS CDK, KINASE, PHOSPHORYLATION, CAK EXPDTA THEORETICAL MODEL AUTHOR G.LOLLI,L.N.JOHNSON REVDAT 1 10-APR-07 2HIC 0 JRNL AUTH G.LOLLI,L.N.JOHNSON JRNL TITL THE RECOGNITION OF CDK2 BY CDK7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DOCKING SOFTWARE USED WAS 3D-DOCK. REMARK 3 ENERGY MINIMISATION PERFORMED USING GROMACS. REMARK 4 REMARK 4 2HIC COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-04-06) REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT RCSB ON 29-JUN-2006. REMARK 100 THE RCSB ID CODE IS RCSB038380. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: CDK2 MISSES AA. 37-40 AND CDK7 MISSES AA. 44-55. THESE REMARK 220 AA. ARE NOT PRESENT IN THE CRYSTALLOGRAPHIC STRUCTURES REMARK 220 USED IN THE DOCKING PROCEDURE. FOR DOCKING PURPOSES, AA. REMARK 220 154-165 WERE REMOVED FROM CDK2 AND AA. 160-177 WERE REMARK 220 REMOVED FROM CDK7. THESE REGIONS ARE SUPPOSED TO UNDERGO REMARK 220 MAJOR STRUCTURAL REARRANGEMENTS FOLLOWING COMPLEX REMARK 220 FORMATION. THIS THEORETICAL MODEL ENTRY WAS NOT REMARK 220 ANNOTATED AND NOT VALIDATED BY THE WWPDB STAFF AND REMARK 220 THEREFORE MAY NOT CONFORM TO THE PDB FORMAT. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 37 REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 VAL A 156 REMARK 465 ARG A 157 REMARK 465 THR A 158 REMARK 465 TYR A 159 REMARK 465 THR A 160 REMARK 465 HIS A 161 REMARK 465 GLU A 162 REMARK 465 VAL A 163 REMARK 465 VAL A 164 REMARK 465 THR A 165 REMARK 465 LYS B 44 REMARK 465 LEU B 45 REMARK 465 GLY B 46 REMARK 465 HIS B 47 REMARK 465 ARG B 48 REMARK 465 SER B 49 REMARK 465 GLU B 50 REMARK 465 ALA B 51 REMARK 465 LYS B 52 REMARK 465 ASP B 53 REMARK 465 GLY B 54 REMARK 465 ILE B 55 REMARK 465 LYS B 160 REMARK 465 SER B 161 REMARK 465 PHE B 162 REMARK 465 GLY B 163 REMARK 465 SER B 164 REMARK 465 PRO B 165 REMARK 465 ASN B 166 REMARK 465 ARG B 167 REMARK 465 ALA B 168 REMARK 465 TYR B 169 REMARK 465 THR B 170 REMARK 465 HIS B 171 REMARK 465 GLN B 172 REMARK 465 VAL B 173 REMARK 465 VAL B 174 REMARK 465 THR B 175 REMARK 465 ARG B 176 REMARK 465 TRP B 177 SEQRES 1 A 298 MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY GLU GLY SEQRES 2 A 298 THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU THR SEQRES 3 A 298 GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP THR SEQRES 4 A 298 GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU ILE SEQRES 5 A 298 SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE VAL LYS SEQRES 6 A 298 LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR LEU SEQRES 7 A 298 VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS PHE MET SEQRES 8 A 298 ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU ILE SEQRES 9 A 298 LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA PHE SEQRES 10 A 298 CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 11 A 298 GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS LEU SEQRES 12 A 298 ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO VAL SEQRES 13 A 298 ARG THR TYR THR HIS GLU VAL VAL THR LEU TRP TYR ARG SEQRES 14 A 298 ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER THR SEQRES 15 A 298 ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA GLU SEQRES 16 A 298 MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER GLU SEQRES 17 A 298 ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY THR SEQRES 18 A 298 PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET PRO SEQRES 19 A 298 ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN ASP SEQRES 20 A 298 PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY ARG SEQRES 21 A 298 SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN LYS SEQRES 22 A 298 ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE PHE SEQRES 23 A 298 GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU SEQRES 1 B 299 GLU LYS LEU ASP PHE LEU GLY GLU GLY GLN PHE ALA THR SEQRES 2 B 299 VAL TYR LYS ALA ARG ASP LYS ASN THR ASN GLN ILE VAL SEQRES 3 B 299 ALA ILE LYS LYS ILE LYS LEU GLY HIS ARG SER GLU ALA SEQRES 4 B 299 LYS ASP GLY ILE ASN ARG THR ALA LEU ARG GLU ILE LYS SEQRES 5 B 299 LEU LEU GLN GLU LEU SER HIS PRO ASN ILE ILE GLY LEU SEQRES 6 B 299 LEU ASP ALA PHE GLY HIS LYS SER ASN ILE SER LEU VAL SEQRES 7 B 299 PHE ASP PHE MET GLU THR ASP LEU GLU VAL ILE ILE LYS SEQRES 8 B 299 ASP ASN SER LEU VAL LEU THR PRO SER HIS ILE LYS ALA SEQRES 9 B 299 TYR MET LEU MET THR LEU GLN GLY LEU GLU TYR LEU HIS SEQRES 10 B 299 GLN HIS TRP ILE LEU HIS ARG ASP LEU LYS PRO ASN ASN SEQRES 11 B 299 LEU LEU LEU ASP GLU ASN GLY VAL LEU LYS LEU ALA ASP SEQRES 12 B 299 PHE GLY LEU ALA LYS SER PHE GLY SER PRO ASN ARG ALA SEQRES 13 B 299 TYR THR HIS GLN VAL VAL THR ARG TRP TYR ARG ALA PRO SEQRES 14 B 299 GLU LEU LEU PHE GLY ALA ARG MET TYR GLY VAL GLY VAL SEQRES 15 B 299 ASP MET TRP ALA VAL GLY CYS ILE LEU ALA GLU LEU LEU SEQRES 16 B 299 LEU ARG VAL PRO PHE LEU PRO GLY ASP SER ASP LEU ASP SEQRES 17 B 299 GLN LEU THR ARG ILE PHE GLU THR LEU GLY THR PRO THR SEQRES 18 B 299 GLU GLU GLN TRP PRO ASP MET CYS SER LEU PRO ASP TYR SEQRES 19 B 299 VAL THR PHE LYS SER PHE PRO GLY ILE PRO LEU HIS HIS SEQRES 20 B 299 ILE PHE SER ALA ALA GLY ASP ASP LEU LEU ASP LEU ILE SEQRES 21 B 299 GLN GLY LEU PHE LEU PHE ASN PRO CYS ALA ARG ILE THR SEQRES 22 B 299 ALA THR GLN ALA LEU LYS MET LYS TYR PHE SER ASN ARG SEQRES 23 B 299 PRO GLY PRO THR PRO GLY CYS GLN LEU PRO ARG PRO ASN HELIX 1 1 PRO A 45 LEU A 58 1 14 HELIX 2 2 LEU A 87 SER A 94 1 8 HELIX 3 3 PRO A 100 HIS A 121 1 22 HELIX 4 4 LYS A 129 GLN A 131 5 3 HELIX 5 5 GLY A 147 GLY A 153 1 7 HELIX 6 6 ALA A 170 LEU A 175 1 6 HELIX 7 7 THR A 182 ARG A 199 1 18 HELIX 8 8 SER A 207 GLY A 220 1 14 HELIX 9 9 GLY A 229 MET A 233 5 5 HELIX 10 10 ASP A 247 VAL A 252 1 6 HELIX 11 11 ASP A 256 LEU A 267 1 12 HELIX 12 12 SER A 276 LEU A 281 1 6 HELIX 13 13 ALA A 282 GLN A 287 5 6 HELIX 14 14 ARG B 57 LEU B 69 1 13 HELIX 15 15 LEU B 98 LYS B 103 1 6 HELIX 16 16 SER B 112 HIS B 131 1 20 HELIX 17 17 LYS B 139 ASN B 141 5 3 HELIX 18 18 ALA B 180 PHE B 185 1 6 HELIX 19 19 VAL B 192 ARG B 209 1 18 HELIX 20 20 SER B 217 GLY B 230 1 14 HELIX 21 21 ASP B 239 LEU B 243 5 5 HELIX 22 22 PRO B 256 PHE B 261 1 6 HELIX 23 23 GLY B 265 LEU B 277 1 13 HELIX 24 24 THR B 285 MET B 292 1 8 SHEET 1 A 5 PHE A 4 GLY A 11 0 SHEET 2 A 5 VAL A 18 ASN A 23 -1 O LYS A 20 N VAL A 7 SHEET 3 A 5 VAL A 29 LYS A 34 -1 O VAL A 30 N ALA A 21 SHEET 4 A 5 LYS A 75 GLU A 81 -1 O LEU A 78 N LYS A 33 SHEET 5 A 5 LEU A 66 THR A 72 -1 N ASP A 68 O VAL A 79 SHEET 1 B 3 GLN A 85 ASP A 86 0 SHEET 2 B 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 B 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 SHEET 1 C 5 LYS B 14 GLU B 20 0 SHEET 2 C 5 THR B 25 ARG B 30 -1 O VAL B 26 N GLY B 19 SHEET 3 C 5 ILE B 37 LYS B 42 -1 O VAL B 38 N ALA B 29 SHEET 4 C 5 SER B 88 ASP B 92 -1 O PHE B 91 N ALA B 39 SHEET 5 C 5 LEU B 77 PHE B 81 -1 N ASP B 79 O VAL B 90 SHEET 1 D 3 THR B 96 ASP B 97 0 SHEET 2 D 3 LEU B 143 LEU B 145 -1 O LEU B 145 N THR B 96 SHEET 3 D 3 LEU B 151 LEU B 153 -1 O LYS B 152 N LEU B 144 CISPEP 1 PRO A 253 PRO A 254 0 -11.77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 91 0 0 24 16 0 0 6 0 0 0 46 END