HEADER HYDROLASE 27-JUN-06 2HH5 TITLE CRYSTAL STRUCTURE OF CATHEPSIN S IN COMPLEX WITH A ZINC TITLE 2 MEDIATED NON-COVALENT ARYLAMINOETHYL AMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN S; COMPND 3 CHAIN: B, A; COMPND 4 EC: 3.4.22.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSS; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CATHEPSIN S, NONCOVALENT, INHIBITION, ZINC, ARYLAMINOETHYL- KEYWDS 2 AMIDES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SPRAGGON,M.HORNSBY,S.A.LESLEY,D.C.TULLY,J.L.HARRIS, AUTHOR 2 D.S.KARENEWSKY REVDAT 3 24-FEB-09 2HH5 1 VERSN REVDAT 2 05-SEP-06 2HH5 1 JRNL REVDAT 1 15-AUG-06 2HH5 0 JRNL AUTH D.C.TULLY,H.LIU,A.K.CHATTERJEE,P.B.ALPER,R.EPPLE, JRNL AUTH 2 J.A.WILLIAMS,M.J.ROBERTS,D.H.WOODMANSEE,B.T.MASICK, JRNL AUTH 3 C.TUMANUT,J.LI,G.SPRAGGON,M.HORNSBY,J.CHANG, JRNL AUTH 4 T.TUNTLAND,T.HOLLENBECK,P.GORDON,J.L.HARRIS, JRNL AUTH 5 D.S.KARANEWSKY JRNL TITL SYNTHESIS AND SAR OF ARYLAMINOETHYL AMIDES AS JRNL TITL 2 NONCOVALENT INHIBITORS OF CATHEPSIN S: P3 CYCLIC JRNL TITL 3 ETHERS. JRNL REF BIOORG.MED.CHEM.LETT. V. 16 5112 2006 JRNL REFN ISSN 0960-894X JRNL PMID 16876402 JRNL DOI 10.1016/J.BMCL.2006.07.033 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.C.TULLY,H.LIU,P.B.ALPER,A.K.CHATTERJEE,R.EPPLE, REMARK 1 AUTH 2 M.J.ROBERTS,J.A.WILLIAMS,K.T.NGUYEN,D.H.WOODMANSEE, REMARK 1 AUTH 3 C.TUMANUT,J.LI,G.SPRAGGON,J.CHANG,T.TUNTLAND, REMARK 1 AUTH 4 J.L.HARRIS,D.S.KARANEWSKY REMARK 1 TITL SYNTHESIS AND EVALUATION OF ARYLAMINOETHYL AMIDES REMARK 1 TITL 2 AS NONCOVALENT INHIBITORS OF CATHEPSIN S. PART 3: REMARK 1 TITL 3 HETEROCYCLIC P3. REMARK 1 REF BIOORG.MED.CHEM.LETT. V. 16 1975 2006 REMARK 1 REFN ISSN 0960-894X REMARK 1 PMID 16446091 REMARK 1 DOI 10.1016/J.BMCL.2005.12.095 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2048 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 1.08000 REMARK 3 B12 (A**2) : -0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3554 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2996 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4818 ; 1.511 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7016 ; 0.765 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 6.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;38.744 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;12.197 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.584 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4006 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 752 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 861 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3424 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1820 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1967 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.114 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.283 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.109 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2738 ; 1.425 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 904 ; 0.300 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3432 ; 1.713 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1729 ; 3.349 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1386 ; 4.303 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2HH5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROCESS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : 0.76300 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2F1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZNACETATE, 20% PEG-3350, 150MM REMARK 280 SODIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.77100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.62205 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.84300 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 54.77100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 31.62205 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.84300 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 54.77100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 31.62205 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.84300 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.24410 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.68600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 63.24410 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.68600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 63.24410 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.68600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER - THERE ARE TWO REMARK 300 MONOMERS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 941 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 942 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 934 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B -2 REMARK 465 ARG B -1 REMARK 465 ILE B 0 REMARK 465 ASN A -2 REMARK 465 ARG A -1 REMARK 465 ILE A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 21 42.57 -89.27 REMARK 500 THR B 58 -128.70 -115.42 REMARK 500 THR A 58 -130.61 -117.16 REMARK 500 ASN A 163 2.66 -151.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNQ A 401 N1 REMARK 620 2 CYS A 25 SG 120.2 REMARK 620 3 HIS A 164 ND1 112.5 107.6 REMARK 620 4 CL A 802 CL 100.5 110.6 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 139 OD2 REMARK 620 2 HOH A 940 O 105.6 REMARK 620 3 ASP A 139 OD1 56.3 158.7 REMARK 620 4 HIS A 142 NE2 115.6 95.2 102.9 REMARK 620 5 HOH A 803 O 116.0 99.5 81.5 119.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 3 OD1 REMARK 620 2 HOH A 926 O 100.4 REMARK 620 3 HOH A 864 O 90.7 90.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 25 SG REMARK 620 2 HIS B 164 ND1 104.6 REMARK 620 3 GNQ B 501 N1 120.1 112.2 REMARK 620 4 CL B 801 CL 110.2 103.7 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 139 OD1 REMARK 620 2 HOH B 933 O 85.6 REMARK 620 3 HOH B 882 O 156.0 97.6 REMARK 620 4 HIS B 142 NE2 95.4 124.9 102.0 REMARK 620 5 ASP B 139 OD2 56.1 113.9 101.6 111.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 193 OE2 REMARK 620 2 HIS B 188 ND1 116.0 REMARK 620 3 GLU B 15 OE2 114.1 104.8 REMARK 620 4 ASP A 173 OD2 95.9 118.9 107.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 603 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 702 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 703 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 801 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 802 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNQ A 401 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNQ B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F1G RELATED DB: PDB REMARK 900 RELATED ID: 2HHN RELATED DB: PDB REMARK 900 CATHEPSIN S IN COMPLEX WITH NON COVALENT ARYLAMINOETHYL REMARK 900 AMIDE. DBREF 2HH5 A -2 217 UNP P25774 CATS_HUMAN 112 331 DBREF 2HH5 B -2 217 UNP P25774 CATS_HUMAN 112 331 SEQRES 1 B 220 ASN ARG ILE LEU PRO ASP SER VAL ASP TRP ARG GLU LYS SEQRES 2 B 220 GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SER CYS GLY SEQRES 3 B 220 ALA CYS TRP ALA PHE SER ALA VAL GLY ALA LEU GLU ALA SEQRES 4 B 220 GLN LEU LYS LEU LYS THR GLY LYS LEU VAL SER LEU SER SEQRES 5 B 220 ALA GLN ASN LEU VAL ASP CYS SER THR GLU LYS TYR GLY SEQRES 6 B 220 ASN LYS GLY CYS ASN GLY GLY PHE MET THR THR ALA PHE SEQRES 7 B 220 GLN TYR ILE ILE ASP ASN LYS GLY ILE ASP SER ASP ALA SEQRES 8 B 220 SER TYR PRO TYR LYS ALA MET ASP GLN LYS CYS GLN TYR SEQRES 9 B 220 ASP SER LYS TYR ARG ALA ALA THR CYS SER LYS TYR THR SEQRES 10 B 220 GLU LEU PRO TYR GLY ARG GLU ASP VAL LEU LYS GLU ALA SEQRES 11 B 220 VAL ALA ASN LYS GLY PRO VAL SER VAL GLY VAL ASP ALA SEQRES 12 B 220 ARG HIS PRO SER PHE PHE LEU TYR ARG SER GLY VAL TYR SEQRES 13 B 220 TYR GLU PRO SER CYS THR GLN ASN VAL ASN HIS GLY VAL SEQRES 14 B 220 LEU VAL VAL GLY TYR GLY ASP LEU ASN GLY LYS GLU TYR SEQRES 15 B 220 TRP LEU VAL LYS ASN SER TRP GLY HIS ASN PHE GLY GLU SEQRES 16 B 220 GLU GLY TYR ILE ARG MET ALA ARG ASN LYS GLY ASN HIS SEQRES 17 B 220 CYS GLY ILE ALA SER PHE PRO SER TYR PRO GLU ILE SEQRES 1 A 220 ASN ARG ILE LEU PRO ASP SER VAL ASP TRP ARG GLU LYS SEQRES 2 A 220 GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SER CYS GLY SEQRES 3 A 220 ALA CYS TRP ALA PHE SER ALA VAL GLY ALA LEU GLU ALA SEQRES 4 A 220 GLN LEU LYS LEU LYS THR GLY LYS LEU VAL SER LEU SER SEQRES 5 A 220 ALA GLN ASN LEU VAL ASP CYS SER THR GLU LYS TYR GLY SEQRES 6 A 220 ASN LYS GLY CYS ASN GLY GLY PHE MET THR THR ALA PHE SEQRES 7 A 220 GLN TYR ILE ILE ASP ASN LYS GLY ILE ASP SER ASP ALA SEQRES 8 A 220 SER TYR PRO TYR LYS ALA MET ASP GLN LYS CYS GLN TYR SEQRES 9 A 220 ASP SER LYS TYR ARG ALA ALA THR CYS SER LYS TYR THR SEQRES 10 A 220 GLU LEU PRO TYR GLY ARG GLU ASP VAL LEU LYS GLU ALA SEQRES 11 A 220 VAL ALA ASN LYS GLY PRO VAL SER VAL GLY VAL ASP ALA SEQRES 12 A 220 ARG HIS PRO SER PHE PHE LEU TYR ARG SER GLY VAL TYR SEQRES 13 A 220 TYR GLU PRO SER CYS THR GLN ASN VAL ASN HIS GLY VAL SEQRES 14 A 220 LEU VAL VAL GLY TYR GLY ASP LEU ASN GLY LYS GLU TYR SEQRES 15 A 220 TRP LEU VAL LYS ASN SER TRP GLY HIS ASN PHE GLY GLU SEQRES 16 A 220 GLU GLY TYR ILE ARG MET ALA ARG ASN LYS GLY ASN HIS SEQRES 17 A 220 CYS GLY ILE ALA SER PHE PRO SER TYR PRO GLU ILE HET ZN B 601 1 HET ZN B 602 1 HET ZN B 603 1 HET ZN A 701 1 HET ZN A 702 1 HET ZN A 703 1 HET CL B 801 1 HET CL A 802 1 HET GNQ A 401 44 HET GNQ B 501 44 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM GNQ N-[(1R)-1-[(BENZYLSULFONYL)METHYL]-2-{[(1S)-1-METHYL- HETNAM 2 GNQ 2-{[4-(TRIFLUOROMETHOXY)PHENYL]AMINO}ETHYL]AMINO}-2- HETNAM 3 GNQ OXOETHYL]MORPHOLINE-4-CARBOXAMIDE FORMUL 3 ZN 6(ZN 2+) FORMUL 9 CL 2(CL 1-) FORMUL 11 GNQ 2(C25 H31 F3 N4 O6 S) FORMUL 13 HOH *289(H2 O) HELIX 1 1 ARG B 8 GLY B 11 5 4 HELIX 2 2 ALA B 24 GLY B 43 1 20 HELIX 3 3 SER B 49 SER B 57 1 9 HELIX 4 4 THR B 58 GLY B 62 5 5 HELIX 5 5 LYS B 64 GLY B 68 5 5 HELIX 6 6 PHE B 70 LYS B 82 1 13 HELIX 7 7 ASP B 102 LYS B 104 5 3 HELIX 8 8 ARG B 120 LYS B 131 1 12 HELIX 9 9 HIS B 142 LEU B 147 1 6 HELIX 10 10 ASN B 204 ILE B 208 5 5 HELIX 11 11 ARG A 8 GLY A 11 5 4 HELIX 12 12 ALA A 24 GLY A 43 1 20 HELIX 13 13 SER A 49 SER A 57 1 9 HELIX 14 14 THR A 58 GLY A 62 5 5 HELIX 15 15 LYS A 64 GLY A 68 5 5 HELIX 16 16 PHE A 70 ASN A 81 1 12 HELIX 17 17 ASP A 102 LYS A 104 5 3 HELIX 18 18 ARG A 120 LYS A 131 1 12 HELIX 19 19 HIS A 142 LEU A 147 1 6 HELIX 20 20 ASN A 204 ILE A 208 5 5 SHEET 1 A 3 VAL B 5 ASP B 6 0 SHEET 2 A 3 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 A 3 VAL B 134 VAL B 138 -1 N VAL B 134 O VAL B 168 SHEET 1 B 5 VAL B 5 ASP B 6 0 SHEET 2 B 5 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 B 5 LYS B 177 LYS B 183 -1 O LYS B 183 N LEU B 167 SHEET 4 B 5 TYR B 195 ALA B 199 -1 O MET B 198 N TRP B 180 SHEET 5 B 5 VAL B 152 TYR B 153 1 N TYR B 153 O ARG B 197 SHEET 1 C 2 ILE B 84 ASP B 85 0 SHEET 2 C 2 ARG B 106 ALA B 108 -1 O ALA B 107 N ILE B 84 SHEET 1 D 2 LYS B 112 GLU B 115 0 SHEET 2 D 2 SER B 213 GLU B 216 -1 O TYR B 214 N THR B 114 SHEET 1 E 3 VAL A 5 ASP A 6 0 SHEET 2 E 3 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 E 3 VAL A 134 VAL A 138 -1 N VAL A 136 O VAL A 166 SHEET 1 F 5 VAL A 5 ASP A 6 0 SHEET 2 F 5 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 F 5 LYS A 177 LYS A 183 -1 O LYS A 183 N LEU A 167 SHEET 4 F 5 TYR A 195 ALA A 199 -1 O MET A 198 N TRP A 180 SHEET 5 F 5 VAL A 152 TYR A 153 1 N TYR A 153 O ARG A 197 SHEET 1 G 2 ILE A 84 ASP A 85 0 SHEET 2 G 2 ARG A 106 ALA A 108 -1 O ALA A 107 N ILE A 84 SHEET 1 H 2 LYS A 112 GLU A 115 0 SHEET 2 H 2 SER A 213 GLU A 216 -1 O TYR A 214 N THR A 114 SSBOND 1 CYS B 22 CYS B 66 1555 1555 2.06 SSBOND 2 CYS B 56 CYS B 99 1555 1555 2.08 SSBOND 3 CYS B 158 CYS B 206 1555 1555 2.05 SSBOND 4 CYS A 22 CYS A 66 1555 1555 2.07 SSBOND 5 CYS A 56 CYS A 99 1555 1555 2.10 SSBOND 6 CYS A 158 CYS A 206 1555 1555 2.06 LINK ZN ZN A 701 N1 GNQ A 401 1555 1555 2.11 LINK ZN ZN A 701 SG CYS A 25 1555 1555 2.20 LINK ZN ZN A 701 ND1 HIS A 164 1555 1555 2.00 LINK ZN ZN A 701 CL CL A 802 1555 1555 2.28 LINK ZN ZN A 702 OD2 ASP A 139 1555 1555 1.90 LINK ZN ZN A 702 O HOH A 940 1555 1555 2.15 LINK ZN ZN A 702 OD1 ASP A 139 1555 1555 2.59 LINK ZN ZN A 702 NE2 HIS A 142 1555 1555 2.08 LINK ZN ZN A 702 O HOH A 803 1555 1555 2.30 LINK ZN ZN A 703 OD1 ASP A 3 1555 1555 1.91 LINK ZN ZN A 703 O HOH A 926 1555 1555 2.36 LINK ZN ZN A 703 O HOH A 864 1555 1555 2.38 LINK F1 BGNQ B 501 F3 BGNQ A 401 1555 1555 1.73 LINK ZN ZN B 601 SG CYS B 25 1555 1555 2.26 LINK ZN ZN B 601 ND1 HIS B 164 1555 1555 2.01 LINK ZN ZN B 601 N1 GNQ B 501 1555 1555 2.14 LINK ZN ZN B 601 CL CL B 801 1555 1555 2.21 LINK ZN ZN B 602 OD1 ASP B 139 1555 1555 2.62 LINK ZN ZN B 602 O HOH B 933 1555 1555 2.18 LINK ZN ZN B 602 O HOH B 882 1555 1555 2.09 LINK ZN ZN B 602 NE2 HIS B 142 1555 1555 1.89 LINK ZN ZN B 602 OD2 ASP B 139 1555 1555 1.95 LINK ZN ZN B 603 OE2 GLU B 193 1555 1555 1.96 LINK ZN ZN B 603 ND1 HIS B 188 1555 1555 2.13 LINK ZN ZN B 603 OE2 GLU B 15 1555 1555 2.01 LINK ZN ZN B 603 OD2 ASP A 173 1555 6555 2.18 SITE 1 AC1 4 CYS B 25 HIS B 164 GNQ B 501 CL B 801 SITE 1 AC2 4 ASP B 139 HIS B 142 HOH B 882 HOH B 933 SITE 1 AC3 4 ASP A 173 GLU B 15 HIS B 188 GLU B 193 SITE 1 AC4 4 CYS A 25 HIS A 164 GNQ A 401 CL A 802 SITE 1 AC5 4 ASP A 139 HIS A 142 HOH A 803 HOH A 940 SITE 1 AC6 3 ASP A 3 HOH A 864 HOH A 926 SITE 1 AC7 6 GLN B 19 CYS B 25 HIS B 164 TRP B 186 SITE 2 AC7 6 GNQ B 501 ZN B 601 SITE 1 AC8 6 GLN A 19 CYS A 25 HIS A 164 TRP A 186 SITE 2 AC8 6 GNQ A 401 ZN A 701 SITE 1 AC9 24 CYS A 25 TRP A 26 GLY A 62 LYS A 64 SITE 2 AC9 24 GLY A 68 GLY A 69 PHE A 70 ALA A 140 SITE 3 AC9 24 ARG A 141 HIS A 142 TYR A 154 VAL A 162 SITE 4 AC9 24 ASN A 163 HIS A 164 GLY A 165 TRP A 186 SITE 5 AC9 24 PHE A 211 ZN A 701 CL A 802 HOH A 892 SITE 6 AC9 24 HIS B 142 PRO B 143 PHE B 146 GNQ B 501 SITE 1 BC1 24 HIS A 142 PRO A 143 PHE A 146 GNQ A 401 SITE 2 BC1 24 CYS B 25 TRP B 26 GLY B 62 LYS B 64 SITE 3 BC1 24 ASN B 67 GLY B 68 GLY B 69 PHE B 70 SITE 4 BC1 24 ALA B 140 ARG B 141 HIS B 142 TYR B 154 SITE 5 BC1 24 VAL B 162 ASN B 163 HIS B 164 GLY B 165 SITE 6 BC1 24 TRP B 186 PHE B 211 ZN B 601 CL B 801 CRYST1 109.542 109.542 98.529 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009129 0.005271 0.000000 0.00000 SCALE2 0.000000 0.010541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010149 0.00000 MASTER 431 0 10 20 24 0 22 6 0 0 0 34 END