HEADER HYDROLASE, METAL BINDING PROTEIN 23-JUN-06 2HF8 TITLE CRYSTAL STRUCTURE OF HYPB FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII IN THE TRIPHOSPHATE FORM, IN COMPLEX WITH ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HYDROGENASE NICKEL INCORPORATION COMPND 3 PROTEIN HYPB; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: HYPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS ALPHA AND BETA PROTEIN, P-LOOP CONTAINING NUCLEOSIDE KEYWDS 2 TRIPHOSPHATE HYDROLASE, HYDROLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GASPER,A.SCRIMA,A.WITTINGHOFER REVDAT 3 24-FEB-09 2HF8 1 VERSN REVDAT 2 10-OCT-06 2HF8 1 JRNL REVDAT 1 04-JUL-06 2HF8 0 JRNL AUTH R.GASPER,A.SCRIMA,A.WITTINGHOFER JRNL TITL STRUCTURAL INSIGHTS INTO HYPB, A GTP-BINDING JRNL TITL 2 PROTEIN THAT REGULATES METAL BINDING. JRNL REF J.BIOL.CHEM. V. 281 27492 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16807243 JRNL DOI 10.1074/JBC.M600809200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3350 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4518 ; 1.090 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 5.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;33.660 ;26.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 662 ;13.260 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2360 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1440 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2280 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.120 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.232 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2160 ; 0.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3346 ; 0.835 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 1.223 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1172 ; 1.969 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2HF8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.760 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.94 REMARK 200 R MERGE FOR SHELL (I) : 0.08400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 175 MM MALEIC ACID DISODIUM SALT, REMARK 280 52.5 MM HCL, 14% PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS COMPOSED OF CHAIN A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 VAL B 6 REMARK 465 LEU B 7 REMARK 465 ASP B 8 REMARK 465 ILE B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 69 O HOH A 467 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 122.85 -179.57 REMARK 500 ILE A 126 -75.73 -118.01 REMARK 500 ASN B 124 125.36 -179.66 REMARK 500 ILE B 126 -84.62 -106.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GSP A 300 O3G REMARK 620 2 THR A 47 OG1 176.4 REMARK 620 3 ASP A 75 OD2 96.9 85.1 REMARK 620 4 HOH A 468 O 92.1 85.1 84.8 REMARK 620 5 GLU A 120 OE2 92.0 90.8 95.6 175.8 REMARK 620 6 GSP A 300 O2B 90.0 87.5 167.5 84.6 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 95 SG REMARK 620 2 CYS A 127 SG 102.7 REMARK 620 3 CYS B 95 SG 117.6 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 104 NE2 109.1 REMARK 620 3 HIS B 104 NE2 100.5 114.0 REMARK 620 4 HIS B 100 NE2 104.5 125.6 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GSP B 300 O3G REMARK 620 2 THR B 47 OG1 177.7 REMARK 620 3 HOH B 437 O 92.3 87.8 REMARK 620 4 GSP B 300 O2B 90.9 86.9 81.2 REMARK 620 5 GLU B 120 OE2 91.9 87.8 173.9 94.4 REMARK 620 6 ASP B 75 OD2 92.8 89.4 95.6 175.1 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 95 SG REMARK 620 2 HOH B 462 O 91.3 REMARK 620 3 HIS B 96 ND1 128.3 105.0 REMARK 620 4 CYS B 127 SG 113.7 103.6 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 104 NE2 REMARK 620 2 HIS B 100 NE2 98.8 REMARK 620 3 HIS A 104 NE2 96.0 102.4 REMARK 620 4 HIS A 100 NE2 121.5 124.1 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 404 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP A 300 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP B 300 DBREF 2HF8 A 1 221 UNP Q57884 HYPB_METJA 1 221 DBREF 2HF8 B 1 221 UNP Q57884 HYPB_METJA 1 221 SEQADV 2HF8 GLY A -4 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 ALA A -3 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MET A -2 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY A -1 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY A 0 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MSE A 39 UNP Q57884 MET 39 MODIFIED RESIDUE SEQADV 2HF8 MSE A 79 UNP Q57884 MET 79 MODIFIED RESIDUE SEQADV 2HF8 MSE A 158 UNP Q57884 MET 158 MODIFIED RESIDUE SEQADV 2HF8 MSE A 182 UNP Q57884 MET 182 MODIFIED RESIDUE SEQADV 2HF8 MSE A 203 UNP Q57884 MET 203 MODIFIED RESIDUE SEQADV 2HF8 GLY B -4 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 ALA B -3 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MET B -2 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY B -1 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY B 0 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MSE B 39 UNP Q57884 MET 39 MODIFIED RESIDUE SEQADV 2HF8 MSE B 79 UNP Q57884 MET 79 MODIFIED RESIDUE SEQADV 2HF8 MSE B 158 UNP Q57884 MET 158 MODIFIED RESIDUE SEQADV 2HF8 MSE B 182 UNP Q57884 MET 182 MODIFIED RESIDUE SEQADV 2HF8 MSE B 203 UNP Q57884 MET 203 MODIFIED RESIDUE SEQRES 1 A 226 GLY ALA MET GLY GLY MET HIS LEU VAL GLY VAL LEU ASP SEQRES 2 A 226 ILE ALA LYS ASP ILE LEU LYS ALA ASN LYS ARG LEU ALA SEQRES 3 A 226 ASP LYS ASN ARG LYS LEU LEU ASN LYS HIS GLY VAL VAL SEQRES 4 A 226 ALA PHE ASP PHE MSE GLY ALA ILE GLY SER GLY LYS THR SEQRES 5 A 226 LEU LEU ILE GLU LYS LEU ILE ASP ASN LEU LYS ASP LYS SEQRES 6 A 226 TYR LYS ILE ALA CYS ILE ALA GLY ASP VAL ILE ALA LYS SEQRES 7 A 226 PHE ASP ALA GLU ARG MSE GLU LYS HIS GLY ALA LYS VAL SEQRES 8 A 226 VAL PRO LEU ASN THR GLY LYS GLU CYS HIS LEU ASP ALA SEQRES 9 A 226 HIS LEU VAL GLY HIS ALA LEU GLU ASP LEU ASN LEU ASP SEQRES 10 A 226 GLU ILE ASP LEU LEU PHE ILE GLU ASN VAL GLY ASN LEU SEQRES 11 A 226 ILE CYS PRO ALA ASP PHE ASP LEU GLY THR HIS LYS ARG SEQRES 12 A 226 ILE VAL VAL ILE SER THR THR GLU GLY ASP ASP THR ILE SEQRES 13 A 226 GLU LYS HIS PRO GLY ILE MSE LYS THR ALA ASP LEU ILE SEQRES 14 A 226 VAL ILE ASN LYS ILE ASP LEU ALA ASP ALA VAL GLY ALA SEQRES 15 A 226 ASP ILE LYS LYS MSE GLU ASN ASP ALA LYS ARG ILE ASN SEQRES 16 A 226 PRO ASP ALA GLU VAL VAL LEU LEU SER LEU LYS THR MSE SEQRES 17 A 226 GLU GLY PHE ASP LYS VAL LEU GLU PHE ILE GLU LYS SER SEQRES 18 A 226 VAL LYS GLU VAL LYS SEQRES 1 B 226 GLY ALA MET GLY GLY MET HIS LEU VAL GLY VAL LEU ASP SEQRES 2 B 226 ILE ALA LYS ASP ILE LEU LYS ALA ASN LYS ARG LEU ALA SEQRES 3 B 226 ASP LYS ASN ARG LYS LEU LEU ASN LYS HIS GLY VAL VAL SEQRES 4 B 226 ALA PHE ASP PHE MSE GLY ALA ILE GLY SER GLY LYS THR SEQRES 5 B 226 LEU LEU ILE GLU LYS LEU ILE ASP ASN LEU LYS ASP LYS SEQRES 6 B 226 TYR LYS ILE ALA CYS ILE ALA GLY ASP VAL ILE ALA LYS SEQRES 7 B 226 PHE ASP ALA GLU ARG MSE GLU LYS HIS GLY ALA LYS VAL SEQRES 8 B 226 VAL PRO LEU ASN THR GLY LYS GLU CYS HIS LEU ASP ALA SEQRES 9 B 226 HIS LEU VAL GLY HIS ALA LEU GLU ASP LEU ASN LEU ASP SEQRES 10 B 226 GLU ILE ASP LEU LEU PHE ILE GLU ASN VAL GLY ASN LEU SEQRES 11 B 226 ILE CYS PRO ALA ASP PHE ASP LEU GLY THR HIS LYS ARG SEQRES 12 B 226 ILE VAL VAL ILE SER THR THR GLU GLY ASP ASP THR ILE SEQRES 13 B 226 GLU LYS HIS PRO GLY ILE MSE LYS THR ALA ASP LEU ILE SEQRES 14 B 226 VAL ILE ASN LYS ILE ASP LEU ALA ASP ALA VAL GLY ALA SEQRES 15 B 226 ASP ILE LYS LYS MSE GLU ASN ASP ALA LYS ARG ILE ASN SEQRES 16 B 226 PRO ASP ALA GLU VAL VAL LEU LEU SER LEU LYS THR MSE SEQRES 17 B 226 GLU GLY PHE ASP LYS VAL LEU GLU PHE ILE GLU LYS SER SEQRES 18 B 226 VAL LYS GLU VAL LYS MODRES 2HF8 MSE A 39 MET SELENOMETHIONINE MODRES 2HF8 MSE A 79 MET SELENOMETHIONINE MODRES 2HF8 MSE A 158 MET SELENOMETHIONINE MODRES 2HF8 MSE A 182 MET SELENOMETHIONINE MODRES 2HF8 MSE A 203 MET SELENOMETHIONINE MODRES 2HF8 MSE B 39 MET SELENOMETHIONINE MODRES 2HF8 MSE B 79 MET SELENOMETHIONINE MODRES 2HF8 MSE B 158 MET SELENOMETHIONINE MODRES 2HF8 MSE B 182 MET SELENOMETHIONINE MODRES 2HF8 MSE B 203 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 79 8 HET MSE A 158 8 HET MSE A 182 8 HET MSE A 203 8 HET MSE B 39 8 HET MSE B 79 8 HET MSE B 158 8 HET MSE B 182 8 HET MSE B 203 8 HET MG A 301 1 HET MG B 301 1 HET ZN A 401 1 HET ZN B 402 1 HET ZN A 403 1 HET ZN B 404 1 HET GSP A 300 32 HET GSP B 300 32 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 GSP 2(C10 H16 N5 O13 P3 S) FORMUL 11 HOH *128(H2 O) HELIX 1 1 ASP A 12 HIS A 31 1 20 HELIX 2 2 GLY A 45 LYS A 58 1 14 HELIX 3 3 ALA A 72 LYS A 81 1 10 HELIX 4 4 ASP A 98 GLU A 107 1 10 HELIX 5 5 ASP A 108 LEU A 109 5 2 HELIX 6 6 ASN A 110 ILE A 114 5 5 HELIX 7 7 ILE A 126 PHE A 131 5 6 HELIX 8 8 THR A 145 GLY A 147 5 3 HELIX 9 9 ASP A 149 HIS A 154 1 6 HELIX 10 10 HIS A 154 LYS A 159 1 6 HELIX 11 11 LYS A 168 ASP A 170 5 3 HELIX 12 12 LEU A 171 GLY A 176 1 6 HELIX 13 13 ASP A 178 ASN A 190 1 13 HELIX 14 14 GLY A 205 VAL A 220 1 16 HELIX 15 15 ASP B 12 HIS B 31 1 20 HELIX 16 16 GLY B 45 LYS B 58 1 14 HELIX 17 17 ALA B 72 LYS B 81 1 10 HELIX 18 18 ASP B 98 ASP B 108 1 11 HELIX 19 19 LEU B 109 ILE B 114 5 6 HELIX 20 20 ILE B 126 PHE B 131 5 6 HELIX 21 21 THR B 145 GLY B 147 5 3 HELIX 22 22 HIS B 154 ALA B 161 1 8 HELIX 23 23 LYS B 168 ASP B 170 5 3 HELIX 24 24 LEU B 171 GLY B 176 1 6 HELIX 25 25 ASP B 178 ASN B 190 1 13 HELIX 26 26 GLY B 205 GLU B 219 1 15 SHEET 1 A 7 LYS A 85 ASN A 90 0 SHEET 2 A 7 ILE A 63 ASP A 69 1 N ALA A 67 O LEU A 89 SHEET 3 A 7 LEU A 116 GLU A 120 1 O GLU A 120 N ILE A 66 SHEET 4 A 7 VAL A 34 GLY A 40 1 N PHE A 38 O ILE A 119 SHEET 5 A 7 LYS A 137 SER A 143 1 O ILE A 139 N MSE A 39 SHEET 6 A 7 LEU A 163 ASN A 167 1 O ASN A 167 N ILE A 142 SHEET 7 A 7 GLU A 194 LEU A 197 1 O GLU A 194 N ILE A 164 SHEET 1 B 7 LYS B 85 ASN B 90 0 SHEET 2 B 7 ILE B 63 ASP B 69 1 N ALA B 67 O LEU B 89 SHEET 3 B 7 LEU B 116 GLU B 120 1 O GLU B 120 N ILE B 66 SHEET 4 B 7 VAL B 34 GLY B 40 1 N PHE B 38 O ILE B 119 SHEET 5 B 7 LYS B 137 SER B 143 1 O ILE B 139 N MSE B 39 SHEET 6 B 7 LEU B 163 ASN B 167 1 O ASN B 167 N ILE B 142 SHEET 7 B 7 GLU B 194 LEU B 197 1 O GLU B 194 N ILE B 164 LINK C PHE A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N GLY A 40 1555 1555 1.33 LINK C ARG A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLU A 80 1555 1555 1.33 LINK C ILE A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N LYS A 159 1555 1555 1.33 LINK C LYS A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N GLU A 183 1555 1555 1.33 LINK C THR A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N GLU A 204 1555 1555 1.33 LINK O3G GSP A 300 MG MG A 301 1555 1555 1.93 LINK MG MG A 301 OG1 THR A 47 1555 1555 2.01 LINK MG MG A 301 OD2 ASP A 75 1555 1555 2.00 LINK MG MG A 301 O HOH A 468 1555 1555 2.05 LINK MG MG A 301 OE2 GLU A 120 1555 1555 2.09 LINK MG MG A 301 O2B GSP A 300 1555 1555 2.12 LINK ZN ZN A 401 SG CYS A 95 1555 1555 2.38 LINK ZN ZN A 401 SG CYS A 127 1555 1555 2.19 LINK ZN ZN A 401 SG CYS B 95 1555 1555 2.20 LINK ZN ZN A 403 NE2 HIS A 100 1555 1555 2.34 LINK ZN ZN A 403 NE2 HIS A 104 1555 1555 1.83 LINK C PHE B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N GLY B 40 1555 1555 1.33 LINK C ARG B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N GLU B 80 1555 1555 1.33 LINK C ILE B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N LYS B 159 1555 1555 1.33 LINK C LYS B 181 N MSE B 182 1555 1555 1.33 LINK C MSE B 182 N GLU B 183 1555 1555 1.33 LINK C THR B 202 N MSE B 203 1555 1555 1.34 LINK C MSE B 203 N GLU B 204 1555 1555 1.33 LINK O3G GSP B 300 MG MG B 301 1555 1555 1.97 LINK MG MG B 301 OG1 THR B 47 1555 1555 2.07 LINK MG MG B 301 O HOH B 437 1555 1555 2.23 LINK MG MG B 301 O2B GSP B 300 1555 1555 2.10 LINK MG MG B 301 OE2 GLU B 120 1555 1555 2.14 LINK MG MG B 301 OD2 ASP B 75 1555 1555 2.15 LINK ZN ZN B 402 SG CYS B 95 1555 1555 2.10 LINK ZN ZN B 402 O HOH B 462 1555 1555 2.22 LINK ZN ZN B 402 ND1 HIS B 96 1555 1555 2.20 LINK ZN ZN B 402 SG CYS B 127 1555 1555 2.33 LINK ZN ZN B 404 NE2 HIS B 104 1555 1555 2.05 LINK ZN ZN B 404 NE2 HIS B 100 1555 1555 2.13 LINK ZN ZN A 403 NE2 HIS B 104 1555 4455 2.06 LINK ZN ZN A 403 NE2 HIS B 100 1555 4455 2.09 LINK ZN ZN B 404 NE2 HIS A 104 1555 4555 2.34 LINK ZN ZN B 404 NE2 HIS A 100 1555 4555 1.83 SITE 1 AC1 5 THR A 47 ASP A 75 GLU A 120 GSP A 300 SITE 2 AC1 5 HOH A 468 SITE 1 AC2 5 THR B 47 ASP B 75 GLU B 120 GSP B 300 SITE 2 AC2 5 HOH B 437 SITE 1 AC3 4 CYS A 95 CYS A 127 CYS B 95 ZN B 402 SITE 1 AC4 5 ZN A 401 CYS B 95 HIS B 96 CYS B 127 SITE 2 AC4 5 HOH B 462 SITE 1 AC5 4 HIS A 100 HIS A 104 HIS B 100 HIS B 104 SITE 1 AC6 4 HIS A 100 HIS A 104 HIS B 100 HIS B 104 SITE 1 AC7 25 GLY A 43 SER A 44 GLY A 45 LYS A 46 SITE 2 AC7 25 THR A 47 LEU A 48 ASP A 75 ARG A 78 SITE 3 AC7 25 GLU A 120 ASN A 167 LYS A 168 ASP A 170 SITE 4 AC7 25 SER A 199 LEU A 200 LYS A 201 MG A 301 SITE 5 AC7 25 HOH A 416 HOH A 458 HOH A 464 HOH A 465 SITE 6 AC7 25 HOH A 468 GLU B 146 LYS B 153 ALA B 174 SITE 7 AC7 25 VAL B 175 SITE 1 AC8 26 GLU A 146 LYS A 153 ALA A 174 VAL A 175 SITE 2 AC8 26 ILE B 42 GLY B 43 SER B 44 GLY B 45 SITE 3 AC8 26 LYS B 46 THR B 47 LEU B 48 ASP B 75 SITE 4 AC8 26 ARG B 78 GLU B 120 ASN B 167 LYS B 168 SITE 5 AC8 26 ASP B 170 LEU B 171 SER B 199 LEU B 200 SITE 6 AC8 26 LYS B 201 MG B 301 HOH B 422 HOH B 437 SITE 7 AC8 26 HOH B 453 HOH B 463 CRYST1 43.120 68.130 155.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006411 0.00000 MASTER 392 0 18 26 14 0 23 6 0 0 0 36 END