HEADER RNA BINDING PROTEIN 14-JUN-06 2HBA TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L9 (NTL9) TITLE 2 K12M COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: BL17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: RPLI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS L9, RIBOSOMAL PROTEIN, NTL9, K12M, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.-H.CHO,E.Y.KIM,H.SCHINDELIN,D.P.RALEIGH REVDAT 7 20-OCT-21 2HBA 1 REMARK SEQADV LINK REVDAT 6 18-OCT-17 2HBA 1 REMARK REVDAT 5 24-SEP-14 2HBA 1 JRNL REVDAT 4 13-AUG-14 2HBA 1 JRNL REVDAT 3 13-JUL-11 2HBA 1 VERSN REVDAT 2 24-FEB-09 2HBA 1 VERSN REVDAT 1 29-MAY-07 2HBA 0 JRNL AUTH J.H.CHO,W.MENG,S.SATO,E.Y.KIM,H.SCHINDELIN,D.P.RALEIGH JRNL TITL ENERGETICALLY SIGNIFICANT NETWORKS OF COUPLED INTERACTIONS JRNL TITL 2 WITHIN AN UNFOLDED PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 12079 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25099351 JRNL DOI 10.1073/PNAS.1402054111 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 26264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1253 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 824 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 793 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1090 ; 1.673 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1876 ; 1.755 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 102 ; 4.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 33 ;38.384 ;27.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 180 ;12.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 119 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 879 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 143 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 160 ; 0.280 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 695 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 395 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 509 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 60 ; 0.384 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 17 ; 0.280 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.113 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.701 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 675 ; 3.226 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 220 ; 1.714 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 805 ; 3.337 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 362 ; 4.566 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 285 ; 5.596 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1905 ; 3.182 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 114 ;11.310 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1609 ; 4.283 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE 2.09, RESOLVE 2.09 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM IMIDAZOLE (PH 8.0), 200 MM ZN REMARK 280 ACETATE, 2.5 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.37750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.37750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.30700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.20800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.30700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.20800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.37750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.30700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.20800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.37750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.30700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.20800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -666.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.61400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -25.37750 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -26.30700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 37.20800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -26.30700 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 37.20800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -25.37750 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -686.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -26.30700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 37.20800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -26.30700 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -37.20800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 227 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 38 O HOH A 256 1.95 REMARK 500 O HOH A 223 O HOH A 254 2.01 REMARK 500 OE2 GLU B 38 O HOH B 343 2.05 REMARK 500 CL CL A 204 CL CL A 205 2.07 REMARK 500 OE2 GLU B 38 O HOH B 344 2.10 REMARK 500 O HOH A 225 O HOH B 328 2.11 REMARK 500 OD2 ASP A 8 CL CL A 205 2.13 REMARK 500 O HOH A 248 O HOH A 251 2.13 REMARK 500 O HOH B 331 O HOH B 344 2.13 REMARK 500 O HOH A 226 O HOH A 254 2.18 REMARK 500 OE1 GLU B 48 O HOH B 345 2.19 REMARK 500 O HOH B 318 O HOH B 344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL A 203 O HOH B 306 7444 1.38 REMARK 500 O HOH A 246 O HOH B 341 8545 1.81 REMARK 500 O HOH A 251 O HOH B 330 5545 1.96 REMARK 500 O HOH B 340 O HOH B 341 3454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 8 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 MET B 12 CG - SD - CE ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 12 -62.01 -136.58 REMARK 500 PHE A 29 -63.82 -125.69 REMARK 500 MET B 12 -58.00 -122.32 REMARK 500 PHE B 29 -62.14 -130.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 ASP A 23 OD1 98.2 REMARK 620 3 CL A 203 CL 99.3 87.0 REMARK 620 4 HOH A 210 O 106.3 111.0 145.7 REMARK 620 5 HOH B 306 O 111.5 117.7 36.6 111.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 CL A 204 CL 97.4 REMARK 620 3 CL A 205 CL 72.2 63.8 REMARK 620 4 HOH A 234 O 118.3 110.4 72.9 REMARK 620 5 HOH B 304 O 114.0 108.8 171.5 107.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL A 208 CL REMARK 620 2 HOH A 217 O 108.6 REMARK 620 3 HOH A 233 O 109.5 99.8 REMARK 620 4 HOH B 305 O 112.5 110.2 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 220 O REMARK 620 2 MET B 1 N 107.2 REMARK 620 3 ASP B 23 OD1 110.9 102.6 REMARK 620 4 CL B 210 CL 114.1 111.0 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 CL B 206 CL 102.7 REMARK 620 3 HOH B 309 O 104.9 105.9 REMARK 620 4 HOH B 322 O 111.6 104.9 124.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 17 OE2 REMARK 620 2 GLU B 17 OE1 54.2 REMARK 620 3 CL B 201 CL 110.2 99.8 REMARK 620 4 CL B 202 CL 128.0 87.3 109.7 REMARK 620 5 HOH B 303 O 95.1 145.0 107.4 103.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL B 207 CL REMARK 620 2 CL B 209 CL 107.7 REMARK 620 3 IMD B 301 N1 109.2 114.9 REMARK 620 4 HOH B 308 O 95.0 124.1 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 317 O REMARK 620 2 HOH B 317 O 113.5 REMARK 620 3 HOH B 334 O 102.0 101.8 REMARK 620 4 HOH B 334 O 124.5 94.7 118.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HBB RELATED DB: PDB DBREF 2HBA A 1 52 UNP P02417 RL9_BACST 1 52 DBREF 2HBA B 1 52 UNP P02417 RL9_BACST 1 52 SEQADV 2HBA MET A 12 UNP P02417 LYS 12 ENGINEERED MUTATION SEQADV 2HBA MET B 12 UNP P02417 LYS 12 ENGINEERED MUTATION SEQRES 1 A 52 MET LYS VAL ILE PHE LEU LYS ASP VAL LYS GLY MET GLY SEQRES 2 A 52 LYS LYS GLY GLU ILE LYS ASN VAL ALA ASP GLY TYR ALA SEQRES 3 A 52 ASN ASN PHE LEU PHE LYS GLN GLY LEU ALA ILE GLU ALA SEQRES 4 A 52 THR PRO ALA ASN LEU LYS ALA LEU GLU ALA GLN LYS GLN SEQRES 1 B 52 MET LYS VAL ILE PHE LEU LYS ASP VAL LYS GLY MET GLY SEQRES 2 B 52 LYS LYS GLY GLU ILE LYS ASN VAL ALA ASP GLY TYR ALA SEQRES 3 B 52 ASN ASN PHE LEU PHE LYS GLN GLY LEU ALA ILE GLU ALA SEQRES 4 B 52 THR PRO ALA ASN LEU LYS ALA LEU GLU ALA GLN LYS GLN HET ZN A 101 1 HET ZN A 102 1 HET ZN A 106 1 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 208 1 HET ZN B 103 1 HET ZN B 104 1 HET ZN B 105 1 HET ZN B 107 1 HET ZN B 108 1 HET CL B 201 1 HET CL B 202 1 HET CL B 206 1 HET CL B 207 1 HET CL B 209 1 HET CL B 210 1 HET IMD B 301 5 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE FORMUL 3 ZN 8(ZN 2+) FORMUL 6 CL 10(CL 1-) FORMUL 21 IMD C3 H5 N2 1+ FORMUL 22 HOH *95(H2 O) HELIX 1 1 ALA A 22 PHE A 29 1 8 HELIX 2 2 THR A 40 GLN A 52 1 13 HELIX 3 3 ALA B 22 PHE B 29 1 8 HELIX 4 4 THR B 40 GLN B 52 1 13 SHEET 1 A 3 ILE A 18 ASN A 20 0 SHEET 2 A 3 LYS A 2 PHE A 5 -1 N VAL A 3 O LYS A 19 SHEET 3 A 3 ALA A 36 GLU A 38 -1 O ILE A 37 N ILE A 4 SHEET 1 B 3 ILE B 18 ASN B 20 0 SHEET 2 B 3 LYS B 2 PHE B 5 -1 N VAL B 3 O LYS B 19 SHEET 3 B 3 ALA B 36 GLU B 38 -1 O ILE B 37 N ILE B 4 LINK N MET A 1 ZN ZN A 101 1555 1555 2.06 LINK OD2 ASP A 8 ZN ZN A 102 1555 1555 1.98 LINK OD1 ASP A 23 ZN ZN A 101 1555 1555 1.91 LINK ZN ZN A 101 CL CL A 203 1555 1555 1.95 LINK ZN ZN A 101 O HOH A 210 1555 1555 2.23 LINK ZN ZN A 101 O HOH B 306 1555 7444 2.31 LINK ZN ZN A 102 CL CL A 204 1555 1555 2.20 LINK ZN ZN A 102 CL CL A 205 1555 1555 1.59 LINK ZN ZN A 102 O HOH A 234 1555 1555 2.06 LINK ZN ZN A 102 O HOH B 304 1555 6445 2.34 LINK ZN ZN A 106 CL CL A 208 1555 1555 2.17 LINK ZN ZN A 106 O HOH A 217 1555 1555 2.28 LINK ZN ZN A 106 O HOH A 233 1555 1555 2.07 LINK ZN ZN A 106 O HOH B 305 1555 7444 2.22 LINK O HOH A 220 ZN ZN B 103 6444 1555 2.23 LINK N MET B 1 ZN ZN B 103 1555 1555 2.05 LINK OD2 ASP B 8 ZN ZN B 104 1555 1555 1.98 LINK OE2 GLU B 17 ZN ZN B 105 1555 1555 2.01 LINK OE1 GLU B 17 ZN ZN B 105 1555 1555 2.65 LINK OD1 ASP B 23 ZN ZN B 103 1555 1555 1.91 LINK ZN ZN B 103 CL CL B 210 1555 1555 2.19 LINK ZN ZN B 104 CL CL B 206 1555 1555 2.18 LINK ZN ZN B 104 O HOH B 309 1555 1555 2.46 LINK ZN ZN B 104 O HOH B 322 1555 3454 2.40 LINK ZN ZN B 105 CL CL B 201 1555 1555 2.24 LINK ZN ZN B 105 CL CL B 202 1555 1555 2.25 LINK ZN ZN B 105 O HOH B 303 1555 3454 2.04 LINK ZN ZN B 107 CL CL B 207 1555 1555 2.11 LINK ZN ZN B 107 CL CL B 209 1555 1555 2.14 LINK ZN ZN B 107 N1 IMD B 301 1555 1555 2.05 LINK ZN ZN B 107 O HOH B 308 1555 1555 2.45 LINK ZN ZN B 108 O HOH B 317 1555 1555 2.10 LINK ZN ZN B 108 O HOH B 317 1555 4555 2.51 LINK ZN ZN B 108 O HOH B 334 1555 1555 2.24 LINK ZN ZN B 108 O HOH B 334 1555 4555 2.06 SITE 1 AC1 5 MET A 1 ASP A 23 CL A 203 HOH A 210 SITE 2 AC1 5 HOH B 306 SITE 1 AC2 6 ASP A 8 LYS A 10 CL A 204 CL A 205 SITE 2 AC2 6 HOH A 234 HOH B 304 SITE 1 AC3 4 HOH A 220 MET B 1 ASP B 23 CL B 210 SITE 1 AC4 4 ASP B 8 CL B 206 HOH B 309 HOH B 322 SITE 1 AC5 4 GLU B 17 CL B 201 CL B 202 HOH B 303 SITE 1 AC6 4 CL A 208 HOH A 217 HOH A 233 HOH B 305 SITE 1 AC7 4 CL B 207 CL B 209 IMD B 301 HOH B 308 SITE 1 AC8 2 HOH B 317 HOH B 334 SITE 1 AC9 4 GLU B 17 LYS B 19 ZN B 105 CL B 202 SITE 1 BC1 5 GLY B 13 LYS B 14 GLU B 17 ZN B 105 SITE 2 BC1 5 CL B 201 SITE 1 BC2 6 MET A 1 ASP A 23 ZN A 101 HOH A 241 SITE 2 BC2 6 LYS B 10 HOH B 306 SITE 1 BC3 6 ASP A 8 LYS A 10 ZN A 102 CL A 205 SITE 2 BC3 6 LYS B 14 ASN B 20 SITE 1 BC4 5 ASP A 8 ZN A 102 CL A 204 HOH A 209 SITE 2 BC4 5 HOH A 234 SITE 1 BC5 3 ASN A 20 ASP B 8 ZN B 104 SITE 1 BC6 5 ALA B 22 TYR B 25 ZN B 107 CL B 209 SITE 2 BC6 5 IMD B 301 SITE 1 BC7 3 ALA A 22 TYR A 25 ZN A 106 SITE 1 BC8 3 ZN B 107 CL B 207 IMD B 301 SITE 1 BC9 4 ASP A 8 MET B 1 ASP B 23 ZN B 103 SITE 1 CC1 5 ASP A 8 ASP B 23 ZN B 107 CL B 207 SITE 2 CC1 5 CL B 209 CRYST1 52.614 74.416 50.755 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019702 0.00000 MASTER 555 0 19 4 6 0 27 6 0 0 0 8 END