HEADER TRANSLATION 26-MAY-06 2H5E TITLE CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE RELEASE FACTOR RF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE CHAIN RELEASE FACTOR RF-3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DH5A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS BETA BARREL, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR H.W.SONG,Z.H.ZHOU REVDAT 3 24-NOV-10 2H5E 1 JRNL REVDAT 2 24-FEB-09 2H5E 1 VERSN REVDAT 1 15-MAY-07 2H5E 0 JRNL AUTH H.GAO,Z.ZHOU,U.RAWAT,C.HUANG,L.BOUAKAZ,C.WANG,Z.CHENG,Y.LIU, JRNL AUTH 2 A.ZAVIALOV,R.GURSKY,S.SANYAL,M.EHRENBERG,J.FRANK,H.SONG JRNL TITL RF3 INDUCES RIBOSOMAL CONFORMATIONAL CHANGES RESPONSIBLE FOR JRNL TITL 2 DISSOCIATION OF CLASS I RELEASE FACTORS JRNL REF CELL(CAMBRIDGE,MASS.) V. 129 929 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17540173 JRNL DOI 10.1016/J.CELL.2007.03.050 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.010 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.252 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H5E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788, 0.9795, 0.9763 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7%-12% (W/V) PEG 3350, 0.02M DI- REMARK 280 AMMONIUM HYDROGEN CITRATE, 10% (V/V) ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.58700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.83850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 119.89050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.83850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.58700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 119.89050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y, X-Y-1, Z-1 AND REMARK 300 -X+Y, -X-1, Z-L. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 39 REMARK 465 ILE A 40 REMARK 465 GLN A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 THR A 45 REMARK 465 VAL A 46 REMARK 465 LYS A 47 REMARK 465 GLY A 48 REMARK 465 ARG A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 ASN A 52 REMARK 465 GLN A 53 REMARK 465 HIS A 54 REMARK 465 ALA A 55 REMARK 465 LYS A 56 REMARK 465 SER A 57 REMARK 465 ASP A 58 REMARK 465 TRP A 59 REMARK 465 MET A 60 REMARK 465 GLU A 61 REMARK 465 MET A 62 REMARK 465 GLU A 63 REMARK 465 LYS A 64 REMARK 465 GLN A 65 REMARK 465 ARG A 66 REMARK 465 GLY A 67 REMARK 465 ILE A 68 REMARK 465 SER A 69 REMARK 465 GLY A 351 REMARK 465 ASP A 352 REMARK 465 ARG A 353 REMARK 465 SER A 354 REMARK 465 HIS A 355 REMARK 465 LEU A 407 REMARK 465 LYS A 408 REMARK 465 GLN A 409 REMARK 465 MET B 1 REMARK 465 ALA B 39 REMARK 465 ILE B 40 REMARK 465 GLN B 41 REMARK 465 THR B 42 REMARK 465 ALA B 43 REMARK 465 GLY B 44 REMARK 465 THR B 45 REMARK 465 VAL B 46 REMARK 465 LYS B 47 REMARK 465 GLY B 48 REMARK 465 ARG B 49 REMARK 465 GLY B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 GLN B 53 REMARK 465 HIS B 54 REMARK 465 ALA B 55 REMARK 465 LYS B 56 REMARK 465 SER B 57 REMARK 465 ASP B 58 REMARK 465 TRP B 59 REMARK 465 MET B 60 REMARK 465 GLU B 61 REMARK 465 MET B 62 REMARK 465 GLU B 63 REMARK 465 LYS B 64 REMARK 465 GLN B 65 REMARK 465 ARG B 66 REMARK 465 GLY B 67 REMARK 465 ILE B 68 REMARK 465 SER B 69 REMARK 465 ILE B 70 REMARK 465 ASN B 306 REMARK 465 MET B 307 REMARK 465 ASP B 308 REMARK 465 PRO B 309 REMARK 465 LYS B 310 REMARK 465 HIS B 311 REMARK 465 ARG B 312 REMARK 465 ASP B 313 REMARK 465 GLY B 351 REMARK 465 ASP B 352 REMARK 465 ARG B 353 REMARK 465 SER B 354 REMARK 465 HIS B 355 REMARK 465 PRO B 406 REMARK 465 LEU B 407 REMARK 465 LYS B 408 REMARK 465 GLN B 409 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 188 O LYS B 208 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 229 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 313 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 344 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 150 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 229 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 242 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 5 -55.07 -8.22 REMARK 500 HIS A 80 -120.06 55.83 REMARK 500 THR A 89 79.36 -119.34 REMARK 500 HIS A 92 -126.35 -90.20 REMARK 500 LYS A 143 36.64 77.71 REMARK 500 LYS A 197 -99.30 -90.93 REMARK 500 GLN A 202 157.46 -49.28 REMARK 500 SER A 238 -165.58 -124.56 REMARK 500 PRO A 279 111.89 -38.84 REMARK 500 ASP A 294 -112.61 -74.48 REMARK 500 LYS A 295 110.30 19.66 REMARK 500 ASN A 306 124.58 67.69 REMARK 500 PRO A 309 -113.95 -7.13 REMARK 500 HIS A 311 -150.27 -152.66 REMARK 500 ARG A 314 50.98 39.29 REMARK 500 VAL A 315 121.92 -36.14 REMARK 500 ARG A 402 129.71 -172.71 REMARK 500 ASP A 405 -140.36 -167.49 REMARK 500 GLN A 411 21.24 -79.22 REMARK 500 GLU A 422 -155.86 -75.58 REMARK 500 ASP A 496 171.78 -53.94 REMARK 500 ASP B 23 0.45 83.56 REMARK 500 HIS B 80 -117.36 58.85 REMARK 500 HIS B 92 -125.76 -87.68 REMARK 500 LYS B 143 37.98 81.74 REMARK 500 LYS B 197 -80.84 -89.87 REMARK 500 GLN B 202 155.61 -44.59 REMARK 500 ASN B 211 30.77 -99.97 REMARK 500 SER B 238 -151.64 -107.62 REMARK 500 ASP B 294 -133.01 -70.08 REMARK 500 LYS B 295 100.09 45.03 REMARK 500 VAL B 315 107.41 23.92 REMARK 500 MET B 349 160.98 -47.31 REMARK 500 THR B 380 -158.91 -124.97 REMARK 500 THR B 388 63.71 -106.98 REMARK 500 GLU B 422 -151.70 -82.59 REMARK 500 SER B 455 -76.11 -82.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 2567 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 3567 DBREF 2H5E A 1 529 UNP Q2M5U3 Q2M5U3_ECOLI 1 529 DBREF 2H5E B 1 529 UNP Q2M5U3 Q2M5U3_ECOLI 1 529 SEQRES 1 A 529 MET THR LEU SER PRO TYR LEU GLN GLU VAL ALA LYS ARG SEQRES 2 A 529 ARG THR PHE ALA ILE ILE SER HIS PRO ASP ALA GLY LYS SEQRES 3 A 529 THR THR ILE THR GLU LYS VAL LEU LEU PHE GLY GLN ALA SEQRES 4 A 529 ILE GLN THR ALA GLY THR VAL LYS GLY ARG GLY SER ASN SEQRES 5 A 529 GLN HIS ALA LYS SER ASP TRP MET GLU MET GLU LYS GLN SEQRES 6 A 529 ARG GLY ILE SER ILE THR THR SER VAL MET GLN PHE PRO SEQRES 7 A 529 TYR HIS ASP CYS LEU VAL ASN LEU LEU ASP THR PRO GLY SEQRES 8 A 529 HIS GLU ASP PHE SER GLU ASP THR TYR ARG THR LEU THR SEQRES 9 A 529 ALA VAL ASP CYS CYS LEU MET VAL ILE ASP ALA ALA LYS SEQRES 10 A 529 GLY VAL GLU ASP ARG THR ARG LYS LEU MET GLU VAL THR SEQRES 11 A 529 ARG LEU ARG ASP THR PRO ILE LEU THR PHE MET ASN LYS SEQRES 12 A 529 LEU ASP ARG ASP ILE ARG ASP PRO MET GLU LEU LEU ASP SEQRES 13 A 529 GLU VAL GLU ASN GLU LEU LYS ILE GLY CYS ALA PRO ILE SEQRES 14 A 529 THR TRP PRO ILE GLY CYS GLY LYS LEU PHE LYS GLY VAL SEQRES 15 A 529 TYR HIS LEU TYR LYS ASP GLU THR TYR LEU TYR GLN SER SEQRES 16 A 529 GLY LYS GLY HIS THR ILE GLN GLU VAL ARG ILE VAL LYS SEQRES 17 A 529 GLY LEU ASN ASN PRO ASP LEU ASP ALA ALA VAL GLY GLU SEQRES 18 A 529 ASP LEU ALA GLN GLN LEU ARG ASP GLU LEU GLU LEU VAL SEQRES 19 A 529 LYS GLY ALA SER ASN GLU PHE ASP LYS GLU LEU PHE LEU SEQRES 20 A 529 ALA GLY GLU ILE THR PRO VAL PHE PHE GLY THR ALA LEU SEQRES 21 A 529 GLY ASN PHE GLY VAL ASP HIS MET LEU ASP GLY LEU VAL SEQRES 22 A 529 GLU TRP ALA PRO ALA PRO MET PRO ARG GLN THR ASP THR SEQRES 23 A 529 ARG THR VAL GLU ALA SER GLU ASP LYS PHE THR GLY PHE SEQRES 24 A 529 VAL PHE LYS ILE GLN ALA ASN MET ASP PRO LYS HIS ARG SEQRES 25 A 529 ASP ARG VAL ALA PHE MET ARG VAL VAL SER GLY LYS TYR SEQRES 26 A 529 GLU LYS GLY MET LYS LEU ARG GLN VAL ARG THR ALA LYS SEQRES 27 A 529 ASP VAL VAL ILE SER ASP ALA LEU THR PHE MET ALA GLY SEQRES 28 A 529 ASP ARG SER HIS VAL GLU GLU ALA TYR PRO GLY ASP ILE SEQRES 29 A 529 LEU GLY LEU HIS ASN HIS GLY THR ILE GLN ILE GLY ASP SEQRES 30 A 529 THR PHE THR GLN GLY GLU MET MET LYS PHE THR GLY ILE SEQRES 31 A 529 PRO ASN PHE ALA PRO GLU LEU PHE ARG ARG ILE ARG LEU SEQRES 32 A 529 LYS ASP PRO LEU LYS GLN LYS GLN LEU LEU LYS GLY LEU SEQRES 33 A 529 VAL GLN LEU SER GLU GLU GLY ALA VAL GLN VAL PHE ARG SEQRES 34 A 529 PRO ILE SER ASN ASN ASP LEU ILE VAL GLY ALA VAL GLY SEQRES 35 A 529 VAL LEU GLN PHE ASP VAL VAL VAL ALA ARG LEU LYS SER SEQRES 36 A 529 GLU TYR ASN VAL GLU ALA VAL TYR GLU SER VAL ASN VAL SEQRES 37 A 529 ALA THR ALA ARG TRP VAL GLU CYS ALA ASP ALA LYS LYS SEQRES 38 A 529 PHE GLU GLU PHE LYS ARG LYS ASN GLU SER GLN LEU ALA SEQRES 39 A 529 LEU ASP GLY GLY ASP ASN LEU ALA TYR ILE ALA THR SER SEQRES 40 A 529 MET VAL ASN LEU ARG LEU ALA GLN GLU ARG TYR PRO ASP SEQRES 41 A 529 VAL GLN PHE HIS GLN THR ARG GLU HIS SEQRES 1 B 529 MET THR LEU SER PRO TYR LEU GLN GLU VAL ALA LYS ARG SEQRES 2 B 529 ARG THR PHE ALA ILE ILE SER HIS PRO ASP ALA GLY LYS SEQRES 3 B 529 THR THR ILE THR GLU LYS VAL LEU LEU PHE GLY GLN ALA SEQRES 4 B 529 ILE GLN THR ALA GLY THR VAL LYS GLY ARG GLY SER ASN SEQRES 5 B 529 GLN HIS ALA LYS SER ASP TRP MET GLU MET GLU LYS GLN SEQRES 6 B 529 ARG GLY ILE SER ILE THR THR SER VAL MET GLN PHE PRO SEQRES 7 B 529 TYR HIS ASP CYS LEU VAL ASN LEU LEU ASP THR PRO GLY SEQRES 8 B 529 HIS GLU ASP PHE SER GLU ASP THR TYR ARG THR LEU THR SEQRES 9 B 529 ALA VAL ASP CYS CYS LEU MET VAL ILE ASP ALA ALA LYS SEQRES 10 B 529 GLY VAL GLU ASP ARG THR ARG LYS LEU MET GLU VAL THR SEQRES 11 B 529 ARG LEU ARG ASP THR PRO ILE LEU THR PHE MET ASN LYS SEQRES 12 B 529 LEU ASP ARG ASP ILE ARG ASP PRO MET GLU LEU LEU ASP SEQRES 13 B 529 GLU VAL GLU ASN GLU LEU LYS ILE GLY CYS ALA PRO ILE SEQRES 14 B 529 THR TRP PRO ILE GLY CYS GLY LYS LEU PHE LYS GLY VAL SEQRES 15 B 529 TYR HIS LEU TYR LYS ASP GLU THR TYR LEU TYR GLN SER SEQRES 16 B 529 GLY LYS GLY HIS THR ILE GLN GLU VAL ARG ILE VAL LYS SEQRES 17 B 529 GLY LEU ASN ASN PRO ASP LEU ASP ALA ALA VAL GLY GLU SEQRES 18 B 529 ASP LEU ALA GLN GLN LEU ARG ASP GLU LEU GLU LEU VAL SEQRES 19 B 529 LYS GLY ALA SER ASN GLU PHE ASP LYS GLU LEU PHE LEU SEQRES 20 B 529 ALA GLY GLU ILE THR PRO VAL PHE PHE GLY THR ALA LEU SEQRES 21 B 529 GLY ASN PHE GLY VAL ASP HIS MET LEU ASP GLY LEU VAL SEQRES 22 B 529 GLU TRP ALA PRO ALA PRO MET PRO ARG GLN THR ASP THR SEQRES 23 B 529 ARG THR VAL GLU ALA SER GLU ASP LYS PHE THR GLY PHE SEQRES 24 B 529 VAL PHE LYS ILE GLN ALA ASN MET ASP PRO LYS HIS ARG SEQRES 25 B 529 ASP ARG VAL ALA PHE MET ARG VAL VAL SER GLY LYS TYR SEQRES 26 B 529 GLU LYS GLY MET LYS LEU ARG GLN VAL ARG THR ALA LYS SEQRES 27 B 529 ASP VAL VAL ILE SER ASP ALA LEU THR PHE MET ALA GLY SEQRES 28 B 529 ASP ARG SER HIS VAL GLU GLU ALA TYR PRO GLY ASP ILE SEQRES 29 B 529 LEU GLY LEU HIS ASN HIS GLY THR ILE GLN ILE GLY ASP SEQRES 30 B 529 THR PHE THR GLN GLY GLU MET MET LYS PHE THR GLY ILE SEQRES 31 B 529 PRO ASN PHE ALA PRO GLU LEU PHE ARG ARG ILE ARG LEU SEQRES 32 B 529 LYS ASP PRO LEU LYS GLN LYS GLN LEU LEU LYS GLY LEU SEQRES 33 B 529 VAL GLN LEU SER GLU GLU GLY ALA VAL GLN VAL PHE ARG SEQRES 34 B 529 PRO ILE SER ASN ASN ASP LEU ILE VAL GLY ALA VAL GLY SEQRES 35 B 529 VAL LEU GLN PHE ASP VAL VAL VAL ALA ARG LEU LYS SER SEQRES 36 B 529 GLU TYR ASN VAL GLU ALA VAL TYR GLU SER VAL ASN VAL SEQRES 37 B 529 ALA THR ALA ARG TRP VAL GLU CYS ALA ASP ALA LYS LYS SEQRES 38 B 529 PHE GLU GLU PHE LYS ARG LYS ASN GLU SER GLN LEU ALA SEQRES 39 B 529 LEU ASP GLY GLY ASP ASN LEU ALA TYR ILE ALA THR SER SEQRES 40 B 529 MET VAL ASN LEU ARG LEU ALA GLN GLU ARG TYR PRO ASP SEQRES 41 B 529 VAL GLN PHE HIS GLN THR ARG GLU HIS HET GDP A2567 28 HET GDP B3567 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 HOH *91(H2 O) HELIX 1 1 PRO A 5 LYS A 12 1 8 HELIX 2 2 GLY A 25 PHE A 36 1 12 HELIX 3 3 SER A 96 THR A 102 1 7 HELIX 4 4 LEU A 103 VAL A 106 5 4 HELIX 5 5 GLU A 120 ARG A 131 1 12 HELIX 6 6 ASP A 150 LYS A 163 1 14 HELIX 7 7 CYS A 175 PHE A 179 5 5 HELIX 8 8 ASN A 212 GLY A 220 1 9 HELIX 9 9 GLY A 220 SER A 238 1 19 HELIX 10 10 ASP A 242 ALA A 248 1 7 HELIX 11 11 GLY A 264 ALA A 276 1 13 HELIX 12 12 GLN A 411 GLU A 422 1 12 HELIX 13 13 VAL A 443 TYR A 457 1 15 HELIX 14 14 ASP A 478 ASN A 489 1 12 HELIX 15 15 SER A 507 TYR A 518 1 12 HELIX 16 16 SER B 4 LYS B 12 1 9 HELIX 17 17 GLY B 25 GLY B 37 1 13 HELIX 18 18 SER B 96 LEU B 103 1 8 HELIX 19 19 THR B 104 VAL B 106 5 3 HELIX 20 20 GLU B 120 ARG B 131 1 12 HELIX 21 21 ASP B 150 LYS B 163 1 14 HELIX 22 22 CYS B 175 PHE B 179 5 5 HELIX 23 23 ASN B 212 SER B 238 1 27 HELIX 24 24 ASP B 242 GLY B 249 1 8 HELIX 25 25 GLY B 264 ALA B 276 1 13 HELIX 26 26 GLN B 411 GLU B 422 1 12 HELIX 27 27 VAL B 443 GLU B 456 1 14 HELIX 28 28 ASP B 478 ASN B 489 1 12 HELIX 29 29 SER B 507 TYR B 518 1 12 SHEET 1 A 7 VAL A 74 TYR A 79 0 SHEET 2 A 7 CYS A 82 LEU A 87 -1 O VAL A 84 N PHE A 77 SHEET 3 A 7 ARG A 13 SER A 20 1 N PHE A 16 O ASN A 85 SHEET 4 A 7 CYS A 108 ASP A 114 1 O LEU A 110 N ILE A 19 SHEET 5 A 7 ILE A 137 ASN A 142 1 O LEU A 138 N MET A 111 SHEET 6 A 7 ILE A 251 PHE A 256 1 O PHE A 255 N MET A 141 SHEET 7 A 7 GLY A 165 PRO A 168 1 N ALA A 167 O THR A 252 SHEET 1 B 4 THR A 170 ILE A 173 0 SHEET 2 B 4 GLY A 181 HIS A 184 -1 O GLY A 181 N ILE A 173 SHEET 3 B 4 GLU A 189 LEU A 192 -1 O GLU A 189 N HIS A 184 SHEET 4 B 4 ILE A 206 VAL A 207 -1 O VAL A 207 N THR A 190 SHEET 1 C 2 ARG A 282 GLN A 283 0 SHEET 2 C 2 THR A 288 VAL A 289 -1 O VAL A 289 N ARG A 282 SHEET 1 D 7 ASP A 339 VAL A 341 0 SHEET 2 D 7 LYS A 330 GLN A 333 -1 N LEU A 331 O VAL A 340 SHEET 3 D 7 THR A 378 THR A 380 -1 O THR A 380 N ARG A 332 SHEET 4 D 7 THR A 297 ILE A 303 -1 N GLY A 298 O PHE A 379 SHEET 5 D 7 ALA A 316 SER A 322 -1 O ARG A 319 N PHE A 299 SHEET 6 D 7 ILE A 364 LEU A 367 -1 O LEU A 365 N MET A 318 SHEET 7 D 7 ALA A 345 LEU A 346 -1 N LEU A 346 O GLY A 366 SHEET 1 E 2 TYR A 325 GLU A 326 0 SHEET 2 E 2 GLU A 358 ALA A 359 -1 O ALA A 359 N TYR A 325 SHEET 1 F 2 PRO A 391 PHE A 393 0 SHEET 2 F 2 THR A 526 GLU A 528 -1 O ARG A 527 N ASN A 392 SHEET 1 G 8 ALA A 461 GLU A 464 0 SHEET 2 G 8 LEU A 397 LEU A 403 -1 N ARG A 402 O VAL A 462 SHEET 3 G 8 LEU A 436 ALA A 440 -1 O VAL A 438 N ARG A 399 SHEET 4 G 8 GLN A 426 PRO A 430 -1 N GLN A 426 O GLY A 439 SHEET 5 G 8 LEU A 493 LEU A 495 -1 O LEU A 495 N ARG A 429 SHEET 6 G 8 LEU A 501 ALA A 505 -1 O ALA A 502 N ALA A 494 SHEET 7 G 8 THR A 470 GLU A 475 -1 N ARG A 472 O TYR A 503 SHEET 8 G 8 GLN A 522 HIS A 524 -1 O HIS A 524 N TRP A 473 SHEET 1 H 7 VAL B 74 TYR B 79 0 SHEET 2 H 7 CYS B 82 LEU B 87 -1 O VAL B 84 N PHE B 77 SHEET 3 H 7 ARG B 13 ILE B 19 1 N PHE B 16 O ASN B 85 SHEET 4 H 7 CYS B 108 ASP B 114 1 O LEU B 110 N ILE B 19 SHEET 5 H 7 ILE B 137 ASN B 142 1 O LEU B 138 N MET B 111 SHEET 6 H 7 ILE B 251 PHE B 256 1 O PHE B 255 N MET B 141 SHEET 7 H 7 GLY B 165 PRO B 168 1 N GLY B 165 O THR B 252 SHEET 1 I 4 THR B 170 ILE B 173 0 SHEET 2 I 4 GLY B 181 HIS B 184 -1 O TYR B 183 N TRP B 171 SHEET 3 I 4 GLU B 189 LEU B 192 -1 O GLU B 189 N HIS B 184 SHEET 4 I 4 ARG B 205 VAL B 207 -1 O VAL B 207 N THR B 190 SHEET 1 J 2 ARG B 282 GLN B 283 0 SHEET 2 J 2 THR B 288 VAL B 289 -1 O VAL B 289 N ARG B 282 SHEET 1 K 7 LYS B 338 VAL B 341 0 SHEET 2 K 7 LYS B 330 GLN B 333 -1 N LEU B 331 O VAL B 340 SHEET 3 K 7 THR B 378 THR B 380 -1 O THR B 380 N ARG B 332 SHEET 4 K 7 THR B 297 ILE B 303 -1 N GLY B 298 O PHE B 379 SHEET 5 K 7 ALA B 316 SER B 322 -1 O PHE B 317 N PHE B 301 SHEET 6 K 7 ILE B 364 LEU B 367 -1 O LEU B 365 N MET B 318 SHEET 7 K 7 ALA B 345 LEU B 346 -1 N LEU B 346 O GLY B 366 SHEET 1 L 2 PRO B 391 PHE B 393 0 SHEET 2 L 2 THR B 526 GLU B 528 -1 O ARG B 527 N ASN B 392 SHEET 1 M 8 ALA B 461 GLU B 464 0 SHEET 2 M 8 LEU B 397 LEU B 403 -1 N ARG B 400 O GLU B 464 SHEET 3 M 8 LEU B 436 ALA B 440 -1 O VAL B 438 N ARG B 399 SHEET 4 M 8 GLN B 426 PRO B 430 -1 N GLN B 426 O GLY B 439 SHEET 5 M 8 LEU B 493 LEU B 495 -1 O LEU B 495 N ARG B 429 SHEET 6 M 8 LEU B 501 ALA B 505 -1 O ALA B 502 N ALA B 494 SHEET 7 M 8 THR B 470 GLU B 475 -1 N ARG B 472 O TYR B 503 SHEET 8 M 8 GLN B 522 HIS B 524 -1 O HIS B 524 N TRP B 473 CISPEP 1 ASP A 405 PRO A 406 0 -1.12 SITE 1 AC1 14 ASP A 23 ALA A 24 GLY A 25 LYS A 26 SITE 2 AC1 14 THR A 27 THR A 28 HIS A 92 ASN A 142 SITE 3 AC1 14 LYS A 143 ASP A 145 ARG A 146 THR A 258 SITE 4 AC1 14 ALA A 259 LEU A 260 SITE 1 AC2 15 GLY A 220 GLU A 221 ASP B 23 ALA B 24 SITE 2 AC2 15 GLY B 25 LYS B 26 THR B 27 THR B 28 SITE 3 AC2 15 HIS B 92 ASN B 142 LYS B 143 ASP B 145 SITE 4 AC2 15 THR B 258 ALA B 259 LEU B 260 CRYST1 73.174 239.781 69.677 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014352 0.00000 MASTER 435 0 2 29 62 0 8 6 0 0 0 82 END