HEADER VIRAL PROTEIN 23-MAY-06 2H3Z TITLE STRUCTURE OF THE HIV-1 MATRIX PROTEIN BOUND TO DI-C4- TITLE 2 PHOSPHATIDYLINOSITOL-(4,5)-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAG POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-132; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 UNMYRISTOYLATED MATRIX PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.S.SAAD,J.MILLER,J.TAI,A.KIM,R.H.GHANAM,M.F.SUMMERS REVDAT 3 29-JAN-14 2H3Z 1 HETSYN VERSN REVDAT 2 24-FEB-09 2H3Z 1 VERSN REVDAT 1 25-JUL-06 2H3Z 0 JRNL AUTH J.S.SAAD,J.MILLER,J.TAI,A.KIM,R.H.GHANAM,M.F.SUMMERS JRNL TITL STRUCTURAL BASIS FOR TARGETING HIV-1 GAG PROTEINS TO THE JRNL TITL 2 PLASMA MEMBRANE FOR VIRUS ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 11364 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16840558 JRNL DOI 10.1073/PNAS.0602818103 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H3Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037900. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE BUFFER, 5MM DTT, REMARK 210 10% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 94.30 57.20 REMARK 500 1 SER A 9 -168.32 -74.90 REMARK 500 1 THR A 53 116.63 -164.79 REMARK 500 1 PRO A 66 2.47 -69.74 REMARK 500 1 THR A 70 36.64 -96.70 REMARK 500 1 ARG A 91 43.87 70.49 REMARK 500 1 VAL A 94 142.02 -37.67 REMARK 500 1 GLN A 116 -75.05 -100.73 REMARK 500 1 ALA A 118 -45.97 -169.97 REMARK 500 1 ASP A 121 -65.77 -178.05 REMARK 500 1 THR A 122 -166.93 60.05 REMARK 500 1 ASN A 125 46.82 -176.33 REMARK 500 2 SER A 9 -169.50 -73.91 REMARK 500 2 SER A 72 -175.37 -60.10 REMARK 500 2 SER A 111 43.71 -94.39 REMARK 500 2 LYS A 112 31.56 -92.15 REMARK 500 2 LYS A 113 -35.89 -142.06 REMARK 500 2 ALA A 120 -69.99 -176.87 REMARK 500 2 THR A 122 99.73 -55.91 REMARK 500 3 SER A 9 -168.91 -73.71 REMARK 500 3 GLN A 65 -60.03 -29.68 REMARK 500 3 THR A 70 43.78 -140.78 REMARK 500 3 GLN A 116 53.90 178.24 REMARK 500 3 ALA A 120 -65.78 -144.49 REMARK 500 3 THR A 122 175.41 56.88 REMARK 500 4 SER A 9 -167.91 -75.58 REMARK 500 4 ALA A 45 17.94 165.80 REMARK 500 4 SER A 72 -170.23 -60.76 REMARK 500 4 ALA A 120 45.10 -161.95 REMARK 500 4 ASP A 121 -39.75 -156.28 REMARK 500 4 SER A 129 -65.02 -134.27 REMARK 500 4 GLN A 130 85.47 65.13 REMARK 500 5 ALA A 3 97.52 59.36 REMARK 500 5 ALA A 5 45.74 -91.38 REMARK 500 5 SER A 9 -168.86 -71.20 REMARK 500 5 ALA A 45 15.75 166.24 REMARK 500 5 SER A 72 -169.81 -60.81 REMARK 500 5 SER A 111 -72.09 -71.13 REMARK 500 5 ASP A 121 -64.72 -173.67 REMARK 500 5 THR A 122 -169.18 51.33 REMARK 500 5 ASN A 124 104.64 63.49 REMARK 500 5 SER A 126 -169.79 -69.05 REMARK 500 5 VAL A 128 90.93 54.35 REMARK 500 6 SER A 6 158.82 -45.73 REMARK 500 6 SER A 9 -164.67 -77.20 REMARK 500 6 THR A 53 114.16 -166.61 REMARK 500 6 PRO A 66 2.71 -69.77 REMARK 500 6 THR A 70 39.08 -98.89 REMARK 500 6 GLN A 90 30.74 -88.78 REMARK 500 6 GLN A 116 38.02 -164.31 REMARK 500 REMARK 500 THIS ENTRY HAS 179 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBU A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H3F RELATED DB: PDB REMARK 900 RELATED ID: 2H3I RELATED DB: PDB REMARK 900 RELATED ID: 2H3Q RELATED DB: PDB REMARK 900 RELATED ID: 2H3V RELATED DB: PDB DBREF 2H3Z A 2 132 UNP P12497 POL_HV1N5 1 131 SEQRES 1 A 131 GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU LEU ASP SEQRES 2 A 131 LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 A 131 GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER ARG GLU SEQRES 4 A 131 LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU GLU THR SEQRES 5 A 131 SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU GLN PRO SEQRES 6 A 131 SER LEU GLN THR GLY SER GLU GLU LEU ARG SER LEU TYR SEQRES 7 A 131 ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN ARG ILE SEQRES 8 A 131 ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS ILE GLU SEQRES 9 A 131 GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN GLN ALA SEQRES 10 A 131 ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER GLN ASN SEQRES 11 A 131 TYR HET PBU A 300 67 HETNAM PBU (2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6- HETNAM 2 PBU TRIHYDROXY-4,5-BIS(PHOSPHONOOXY) HETNAM 3 PBU CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL HETNAM 4 PBU DIBUTANOATE HETSYN PBU DI-BUTANOYL L-ALPHA-PHOSPHATIDYL-D-MYO-INOSITOL 4,5- HETSYN 2 PBU BISPHOSPHATE; DI-C4-PIP2 FORMUL 2 PBU C17 H33 O19 P3 HELIX 1 1 SER A 9 ILE A 19 1 11 HELIX 2 2 LYS A 30 GLU A 42 1 13 HELIX 3 3 ARG A 43 ALA A 45 5 3 HELIX 4 4 ASN A 47 GLU A 52 5 6 HELIX 5 5 THR A 53 GLN A 65 1 13 HELIX 6 6 PRO A 66 LEU A 68 5 3 HELIX 7 7 SER A 72 GLN A 90 1 19 HELIX 8 8 ASP A 96 GLN A 116 1 21 SITE 1 AC1 6 ARG A 22 LYS A 27 LYS A 32 TRP A 36 SITE 2 AC1 6 ARG A 76 THR A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 144 0 1 8 0 0 2 6 0 0 0 11 END