HEADER TRANSFERASE 22-MAY-06 2H39 TITLE CRYSTAL STRUCTURE OF AN ADP-GLUCOSE PHOSPHORYLASE FROM ARABIDOPSIS TITLE 2 THALIANA WITH BOUND ADP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GALACTOSE-1-PHOSPHATE URIDYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAL-1-P URIDYLYLTRANSFERASE, UDP-GLUCOSE-HEXOSE-1-PHOSPHATE COMPND 5 URIDYLYLTRANSFERASE; COMPND 6 EC: 2.7.7.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT5G18200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL834(DE3) P(RARE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-16 KEYWDS AT5G18200, ADP-GLUCOSE, GALT-LIKE, STRUCTURAL GENOMICS FUNCTIONAL KEYWDS 2 FOLLOW-UP STUDY, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, CESG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 4 20-OCT-21 2H39 1 REMARK SEQADV LINK REVDAT 3 25-APR-18 2H39 1 REMARK REVDAT 2 24-FEB-09 2H39 1 VERSN REVDAT 1 13-JUN-06 2H39 0 SPRSDE 13-JUN-06 2H39 2GDK JRNL AUTH J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN JRNL TITL CRYSTAL STRUCTURE OF AN ADP-GLUCOSE PHOSPHORYLASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA WITH BOUND ADP-GLUCOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.G.MCCOY,A.ARABSHAHI,E.BITTO,C.A.BINGMAN,F.J.RUZICKA, REMARK 1 AUTH 2 P.A.FREY,G.N.PHILLIPS JR. REMARK 1 TITL STRUCTURE AND MECHANISM OF AN ADP-GLUCOSE PHOSPHORYLASE FROM REMARK 1 TITL 2 ARABIDOPSIS THALIANA REMARK 1 REF BIOCHEMISTRY V. 45 3154 2006 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16519510 REMARK 1 DOI 10.1021/BI052232M REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.074 REMARK 3 FREE R VALUE TEST SET COUNT : 1639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03100 REMARK 3 B22 (A**2) : -0.03100 REMARK 3 B33 (A**2) : 0.00100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.285 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5128 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6975 ; 1.664 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;37.761 ;24.081 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;14.842 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;25.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 773 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3858 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2511 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3447 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 411 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.178 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.287 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3212 ; 1.516 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5082 ; 2.730 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2189 ; 3.722 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1893 ; 2.784 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRADED MULTILAYER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM-R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.78 REMARK 200 R MERGE (I) : 0.19120 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.34 REMARK 200 R MERGE FOR SHELL (I) : 0.67560 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 1Z84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 20% PEG 2000, 0.2M REMARK 280 SODIUM CHLORIDE, 0.10M MES-ACETATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.65900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.25200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.72700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.25200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.65900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.72700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER. THERE IS 1 BIOLOGICAL UNIT IN REMARK 300 THE ASYMMETRIC UNIT (CHAINS A & B). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ASP A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 VAL A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 GLN A 21 REMARK 465 LYS A 49 REMARK 465 SER A 50 REMARK 465 LYS A 51 REMARK 465 SER A 52 REMARK 465 PRO A 53 REMARK 465 GLN A 54 REMARK 465 ASN A 55 REMARK 465 PRO A 56 REMARK 465 ASN A 57 REMARK 465 PRO A 58 REMARK 465 LYS A 59 REMARK 465 PRO A 60 REMARK 465 SER A 61 REMARK 465 THR A 108 REMARK 465 GLN A 109 REMARK 465 PRO A 110 REMARK 465 GLU A 111 REMARK 465 THR A 112 REMARK 465 GLY A 113 REMARK 465 THR A 114 REMARK 465 SER A 115 REMARK 465 THR A 351 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 ARG B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 ASP B 14 REMARK 465 GLY B 15 REMARK 465 ASP B 16 REMARK 465 SER B 17 REMARK 465 VAL B 18 REMARK 465 GLU B 19 REMARK 465 ASN B 20 REMARK 465 LYS B 49 REMARK 465 SER B 50 REMARK 465 LYS B 51 REMARK 465 SER B 52 REMARK 465 PRO B 53 REMARK 465 GLN B 54 REMARK 465 ASN B 55 REMARK 465 PRO B 56 REMARK 465 ASN B 57 REMARK 465 PRO B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 109 REMARK 465 PRO B 110 REMARK 465 GLU B 111 REMARK 465 THR B 112 REMARK 465 GLY B 113 REMARK 465 THR B 114 REMARK 465 SER B 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 67 O HOH A 549 2.16 REMARK 500 O MET B 182 O HOH B 585 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 147 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 96 76.95 -113.37 REMARK 500 ILE A 228 -61.23 -97.35 REMARK 500 SER A 231 -165.78 -121.59 REMARK 500 LEU A 262 134.58 -37.14 REMARK 500 SER B 38 88.45 -154.74 REMARK 500 HIS B 83 6.95 53.54 REMARK 500 TYR B 96 73.33 -119.11 REMARK 500 SER B 231 -165.15 -121.20 REMARK 500 PHE B 246 17.91 59.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 352 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 66 SG 121.2 REMARK 620 3 HIS A 133 ND1 107.0 114.7 REMARK 620 4 HIS A 184 ND1 109.8 103.9 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 353 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 216 SG REMARK 620 2 CYS A 219 SG 118.8 REMARK 620 3 HIS A 255 ND1 108.5 107.6 REMARK 620 4 HIS A 310 ND1 110.0 107.5 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 352 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 63 SG REMARK 620 2 CYS B 66 SG 125.1 REMARK 620 3 HIS B 133 ND1 104.0 108.0 REMARK 620 4 HIS B 184 ND1 105.6 104.4 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 353 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 216 SG REMARK 620 2 CYS B 219 SG 118.5 REMARK 620 3 HIS B 255 ND1 108.9 104.7 REMARK 620 4 HIS B 310 ND1 114.5 105.6 103.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADQ A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADQ B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.23169 RELATED DB: TARGETDB DBREF 2H39 A 1 351 UNP Q9FK51 GALT_ARATH 1 351 DBREF 2H39 B 1 351 UNP Q9FK51 GALT_ARATH 1 351 SEQADV 2H39 GLY A 186 UNP Q9FK51 HIS 186 ENGINEERED MUTATION SEQADV 2H39 GLY B 186 UNP Q9FK51 HIS 186 ENGINEERED MUTATION SEQRES 1 A 351 MET THR SER PRO SER HIS ALA SER ASP ARG GLY GLY GLY SEQRES 2 A 351 ASP GLY ASP SER VAL GLU ASN GLN SER PRO GLU LEU ARG SEQRES 3 A 351 LYS ASP PRO VAL THR ASN ARG TRP VAL ILE PHE SER PRO SEQRES 4 A 351 ALA ARG ALA LYS ARG PRO THR ASP PHE LYS SER LYS SER SEQRES 5 A 351 PRO GLN ASN PRO ASN PRO LYS PRO SER SER CYS PRO PHE SEQRES 6 A 351 CYS ILE GLY ARG GLU GLN GLU CYS ALA PRO GLU LEU PHE SEQRES 7 A 351 ARG VAL PRO ASP HIS ASP PRO ASN TRP LYS LEU ARG VAL SEQRES 8 A 351 ILE GLU ASN LEU TYR PRO ALA LEU SER ARG ASN LEU GLU SEQRES 9 A 351 THR GLN SER THR GLN PRO GLU THR GLY THR SER ARG THR SEQRES 10 A 351 ILE VAL GLY PHE GLY PHE HIS ASP VAL VAL ILE GLU SER SEQRES 11 A 351 PRO VAL HIS SER ILE GLN LEU SER ASP ILE ASP PRO VAL SEQRES 12 A 351 GLY ILE GLY ASP ILE LEU ILE ALA TYR LYS LYS ARG ILE SEQRES 13 A 351 ASN GLN ILE ALA GLN HIS ASP SER ILE ASN TYR ILE GLN SEQRES 14 A 351 VAL PHE LYS ASN GLN GLY ALA SER ALA GLY ALA SER MET SEQRES 15 A 351 SER HIS SER GLY SER GLN MET MET ALA LEU PRO VAL VAL SEQRES 16 A 351 PRO PRO THR VAL SER SER ARG LEU ASP GLY THR LYS ASP SEQRES 17 A 351 TYR PHE GLU GLU THR GLY LYS CYS CYS LEU CYS GLU ALA SEQRES 18 A 351 LYS SER LYS HIS PHE VAL ILE ASP GLU SER SER HIS PHE SEQRES 19 A 351 VAL SER VAL ALA PRO PHE ALA ALA THR TYR PRO PHE GLU SEQRES 20 A 351 ILE TRP ILE ILE PRO LYS ASP HIS SER SER HIS PHE HIS SEQRES 21 A 351 HIS LEU ASP ASP VAL LYS ALA VAL ASP LEU GLY GLY LEU SEQRES 22 A 351 LEU LYS LEU MET LEU GLN LYS ILE ALA LYS GLN LEU ASN SEQRES 23 A 351 ASP PRO PRO TYR ASN TYR MET ILE HIS THR SER PRO LEU SEQRES 24 A 351 LYS VAL THR GLU SER GLN LEU PRO TYR THR HIS TRP PHE SEQRES 25 A 351 LEU GLN ILE VAL PRO GLN LEU SER GLY VAL GLY GLY PHE SEQRES 26 A 351 GLU ILE GLY THR GLY CYS TYR ILE ASN PRO VAL PHE PRO SEQRES 27 A 351 GLU ASP VAL ALA LYS VAL MET ARG GLU VAL SER LEU THR SEQRES 1 B 351 MET THR SER PRO SER HIS ALA SER ASP ARG GLY GLY GLY SEQRES 2 B 351 ASP GLY ASP SER VAL GLU ASN GLN SER PRO GLU LEU ARG SEQRES 3 B 351 LYS ASP PRO VAL THR ASN ARG TRP VAL ILE PHE SER PRO SEQRES 4 B 351 ALA ARG ALA LYS ARG PRO THR ASP PHE LYS SER LYS SER SEQRES 5 B 351 PRO GLN ASN PRO ASN PRO LYS PRO SER SER CYS PRO PHE SEQRES 6 B 351 CYS ILE GLY ARG GLU GLN GLU CYS ALA PRO GLU LEU PHE SEQRES 7 B 351 ARG VAL PRO ASP HIS ASP PRO ASN TRP LYS LEU ARG VAL SEQRES 8 B 351 ILE GLU ASN LEU TYR PRO ALA LEU SER ARG ASN LEU GLU SEQRES 9 B 351 THR GLN SER THR GLN PRO GLU THR GLY THR SER ARG THR SEQRES 10 B 351 ILE VAL GLY PHE GLY PHE HIS ASP VAL VAL ILE GLU SER SEQRES 11 B 351 PRO VAL HIS SER ILE GLN LEU SER ASP ILE ASP PRO VAL SEQRES 12 B 351 GLY ILE GLY ASP ILE LEU ILE ALA TYR LYS LYS ARG ILE SEQRES 13 B 351 ASN GLN ILE ALA GLN HIS ASP SER ILE ASN TYR ILE GLN SEQRES 14 B 351 VAL PHE LYS ASN GLN GLY ALA SER ALA GLY ALA SER MET SEQRES 15 B 351 SER HIS SER GLY SER GLN MET MET ALA LEU PRO VAL VAL SEQRES 16 B 351 PRO PRO THR VAL SER SER ARG LEU ASP GLY THR LYS ASP SEQRES 17 B 351 TYR PHE GLU GLU THR GLY LYS CYS CYS LEU CYS GLU ALA SEQRES 18 B 351 LYS SER LYS HIS PHE VAL ILE ASP GLU SER SER HIS PHE SEQRES 19 B 351 VAL SER VAL ALA PRO PHE ALA ALA THR TYR PRO PHE GLU SEQRES 20 B 351 ILE TRP ILE ILE PRO LYS ASP HIS SER SER HIS PHE HIS SEQRES 21 B 351 HIS LEU ASP ASP VAL LYS ALA VAL ASP LEU GLY GLY LEU SEQRES 22 B 351 LEU LYS LEU MET LEU GLN LYS ILE ALA LYS GLN LEU ASN SEQRES 23 B 351 ASP PRO PRO TYR ASN TYR MET ILE HIS THR SER PRO LEU SEQRES 24 B 351 LYS VAL THR GLU SER GLN LEU PRO TYR THR HIS TRP PHE SEQRES 25 B 351 LEU GLN ILE VAL PRO GLN LEU SER GLY VAL GLY GLY PHE SEQRES 26 B 351 GLU ILE GLY THR GLY CYS TYR ILE ASN PRO VAL PHE PRO SEQRES 27 B 351 GLU ASP VAL ALA LYS VAL MET ARG GLU VAL SER LEU THR HET ZN A 352 1 HET ZN A 353 1 HET CL A 402 1 HET ADQ A 506 38 HET ZN B 352 1 HET ZN B 353 1 HET CL B 401 1 HET ADQ B 507 38 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ADQ ADENOSINE-5'-DIPHOSPHATE-GLUCOSE HETSYN ADQ ADENOSINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 ADQ ESTER FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 ADQ 2(C16 H25 N5 O15 P2) FORMUL 11 HOH *371(H2 O) HELIX 1 1 PRO A 39 ARG A 44 5 6 HELIX 2 2 ARG A 69 CYS A 73 5 5 HELIX 3 3 GLN A 136 ILE A 140 5 5 HELIX 4 4 ASP A 141 ALA A 160 1 20 HELIX 5 5 GLY A 175 GLY A 179 5 5 HELIX 6 6 PRO A 196 GLY A 214 1 19 HELIX 7 7 GLU A 220 HIS A 225 1 6 HELIX 8 8 HIS A 258 LEU A 262 5 5 HELIX 9 9 ASP A 263 LEU A 285 1 23 HELIX 10 10 THR A 302 THR A 309 5 8 HELIX 11 11 GLY A 323 GLY A 330 1 8 HELIX 12 12 PHE A 337 GLU A 347 1 11 HELIX 13 13 PRO B 39 ARG B 44 5 6 HELIX 14 14 ARG B 69 CYS B 73 5 5 HELIX 15 15 SER B 100 ASN B 102 5 3 HELIX 16 16 LEU B 103 THR B 108 1 6 HELIX 17 17 GLN B 136 ILE B 140 5 5 HELIX 18 18 ASP B 141 ALA B 160 1 20 HELIX 19 19 GLY B 175 GLY B 179 5 5 HELIX 20 20 PRO B 196 GLY B 214 1 19 HELIX 21 21 GLU B 220 HIS B 225 1 6 HELIX 22 22 HIS B 258 LEU B 262 5 5 HELIX 23 23 ASP B 263 LEU B 285 1 23 HELIX 24 24 THR B 302 THR B 309 5 8 HELIX 25 25 GLY B 323 GLY B 330 1 8 HELIX 26 26 PHE B 337 GLU B 347 1 11 SHEET 1 A 4 ILE A 333 ASN A 334 0 SHEET 2 A 4 ARG A 33 PHE A 37 1 N ILE A 36 O ASN A 334 SHEET 3 A 4 GLU A 24 ASP A 28 -1 N GLU A 24 O PHE A 37 SHEET 4 A 4 THR B 117 VAL B 119 -1 O ILE B 118 N LEU A 25 SHEET 1 B10 GLU A 76 VAL A 80 0 SHEET 2 B10 LEU A 89 GLU A 93 -1 O VAL A 91 N LEU A 77 SHEET 3 B10 PHE A 123 ILE A 128 -1 O VAL A 126 N ILE A 92 SHEET 4 B10 GLY A 186 LEU A 192 -1 O SER A 187 N VAL A 127 SHEET 5 B10 TYR A 167 GLN A 174 -1 N GLN A 169 O MET A 190 SHEET 6 B10 TYR A 290 HIS A 295 -1 O ILE A 294 N VAL A 170 SHEET 7 B10 PHE A 312 PRO A 317 -1 O VAL A 316 N ASN A 291 SHEET 8 B10 ILE A 248 PRO A 252 -1 N ILE A 250 O LEU A 313 SHEET 9 B10 PHE A 234 ALA A 238 -1 N VAL A 235 O ILE A 251 SHEET 10 B10 PHE A 226 GLU A 230 -1 N ASP A 229 O SER A 236 SHEET 1 C 4 THR A 117 VAL A 119 0 SHEET 2 C 4 GLU B 24 ASP B 28 -1 O LEU B 25 N ILE A 118 SHEET 3 C 4 ARG B 33 PHE B 37 -1 O PHE B 37 N GLU B 24 SHEET 4 C 4 ILE B 333 ASN B 334 1 O ASN B 334 N ILE B 36 SHEET 1 D10 GLU B 76 VAL B 80 0 SHEET 2 D10 LEU B 89 GLU B 93 -1 O VAL B 91 N LEU B 77 SHEET 3 D10 PHE B 123 ILE B 128 -1 O VAL B 126 N ILE B 92 SHEET 4 D10 GLY B 186 LEU B 192 -1 O SER B 187 N VAL B 127 SHEET 5 D10 TYR B 167 GLN B 174 -1 N PHE B 171 O GLN B 188 SHEET 6 D10 TYR B 290 HIS B 295 -1 O TYR B 290 N GLN B 174 SHEET 7 D10 PHE B 312 PRO B 317 -1 O VAL B 316 N ASN B 291 SHEET 8 D10 ILE B 248 PRO B 252 -1 N ILE B 250 O LEU B 313 SHEET 9 D10 PHE B 234 ALA B 238 -1 N VAL B 235 O ILE B 251 SHEET 10 D10 PHE B 226 GLU B 230 -1 N ASP B 229 O SER B 236 LINK SG CYS A 63 ZN ZN A 352 1555 1555 2.41 LINK SG CYS A 66 ZN ZN A 352 1555 1555 2.50 LINK ND1 HIS A 133 ZN ZN A 352 1555 1555 1.88 LINK ND1 HIS A 184 ZN ZN A 352 1555 1555 2.17 LINK SG CYS A 216 ZN ZN A 353 1555 1555 2.28 LINK SG CYS A 219 ZN ZN A 353 1555 1555 2.41 LINK ND1 HIS A 255 ZN ZN A 353 1555 1555 2.06 LINK ND1 HIS A 310 ZN ZN A 353 1555 1555 2.07 LINK SG CYS B 63 ZN ZN B 352 1555 1555 2.37 LINK SG CYS B 66 ZN ZN B 352 1555 1555 2.48 LINK ND1 HIS B 133 ZN ZN B 352 1555 1555 2.08 LINK ND1 HIS B 184 ZN ZN B 352 1555 1555 2.12 LINK SG CYS B 216 ZN ZN B 353 1555 1555 2.23 LINK SG CYS B 219 ZN ZN B 353 1555 1555 2.31 LINK ND1 HIS B 255 ZN ZN B 353 1555 1555 2.07 LINK ND1 HIS B 310 ZN ZN B 353 1555 1555 2.12 CISPEP 1 VAL A 80 PRO A 81 0 -3.67 CISPEP 2 VAL B 80 PRO B 81 0 -4.90 SITE 1 AC1 4 CYS A 63 CYS A 66 HIS A 133 HIS A 184 SITE 1 AC2 4 CYS A 216 CYS A 219 HIS A 255 HIS A 310 SITE 1 AC3 4 CYS B 63 CYS B 66 HIS B 133 HIS B 184 SITE 1 AC4 4 CYS B 216 CYS B 219 HIS B 255 HIS B 310 SITE 1 AC5 4 PHE B 259 HIS B 260 THR B 296 HOH B 611 SITE 1 AC6 3 PHE A 259 HIS A 260 THR A 296 SITE 1 AC7 30 PHE A 65 GLU A 72 CYS A 73 ALA A 74 SITE 2 AC7 30 ILE A 92 GLU A 93 ASN A 94 LEU A 95 SITE 3 AC7 30 TYR A 96 PHE A 171 ASN A 173 GLY A 179 SITE 4 AC7 30 ALA A 180 SER A 181 MET A 182 GLN A 188 SITE 5 AC7 30 HOH A 559 HOH A 614 HOH A 615 HOH A 687 SITE 6 AC7 30 HOH A 690 ARG B 41 ARG B 44 GLY B 321 SITE 7 AC7 30 GLY B 323 GLY B 324 PHE B 325 GLU B 326 SITE 8 AC7 30 ILE B 333 HOH B 544 SITE 1 AC8 26 ARG A 41 ARG A 44 GLY A 321 GLY A 323 SITE 2 AC8 26 GLY A 324 PHE A 325 GLU A 326 PHE B 65 SITE 3 AC8 26 GLU B 72 CYS B 73 ALA B 74 ILE B 92 SITE 4 AC8 26 GLU B 93 ASN B 94 LEU B 95 TYR B 96 SITE 5 AC8 26 ASN B 173 GLY B 179 ALA B 180 SER B 181 SITE 6 AC8 26 MET B 182 GLN B 188 HOH B 537 HOH B 546 SITE 7 AC8 26 HOH B 629 HOH B 672 CRYST1 61.318 95.454 110.504 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009050 0.00000 MASTER 476 0 8 26 28 0 21 6 0 0 0 54 END