HEADER HYDROLASE 17-MAY-06 2H1X TITLE CRYSTAL STRUCTURE OF 5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TITLE 2 TRP, TRANSTHYRETIN RELATED PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TRP, COMPND 3 TRANSTHYRETIN RELATED PROTEIN); COMPND 4 CHAIN: A, B, C, D; COMPND 5 EC: 3.5.2.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: GENEID:558664; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS 5-HYDROXYISOURATE HYDROLASE, TRP, URIC ACID DEGRADATION, ALLANTOIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZANOTTI,L.CENDRON,C.FOLLI,I.RAMAZZINA,R.PERCUDANI,R.BERNI REVDAT 3 20-OCT-21 2H1X 1 SEQADV REVDAT 2 24-FEB-09 2H1X 1 VERSN REVDAT 1 31-OCT-06 2H1X 0 JRNL AUTH G.ZANOTTI,L.CENDRON,I.RAMAZZINA,C.FOLLI,R.PERCUDANI,R.BERNI JRNL TITL STRUCTURE OF ZEBRA FISH HIUASE: INSIGHTS INTO EVOLUTION OF JRNL TITL 2 AN ENZYME TO A HORMONE TRANSPORTER. JRNL REF J.MOL.BIOL. V. 363 1 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16952372 JRNL DOI 10.1016/J.JMB.2006.07.079 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.RAMAZZINA,C.FOLLI,A.SECCHI,R.BERNI,R.PERCUDANI REMARK 1 TITL COMPLETING THE URIC ACID DEGRADATION PATHWAY THROUGH REMARK 1 TITL 2 PHYLOGENETIC COMPARISON OF WHOLE GENOMES REMARK 1 REF NAT.CHEM.BIOL. V. 2 144 2006 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 25579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3672 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5016 ; 1.159 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 5.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.694 ;22.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;14.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;27.602 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2800 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1563 ; 0.234 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2516 ; 0.327 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 343 ; 0.218 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.301 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.260 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2320 ; 2.218 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3668 ; 3.126 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 2.349 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1348 ; 3.322 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 119 5 REMARK 3 1 B 7 B 119 5 REMARK 3 1 C 7 C 119 5 REMARK 3 1 D 7 D 119 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 452 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 452 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 452 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 452 ; 0.23 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 441 ; 0.36 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 441 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 441 ; 0.41 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 441 ; 0.42 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 452 ; 0.90 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 452 ; 0.93 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 452 ; 0.91 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 452 ; 0.84 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 441 ; 2.07 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 441 ; 1.87 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 441 ; 2.01 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 441 ; 1.91 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1F41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 20% PEG 10000, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.06750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE HOMO-TETRAMER PRESENT IN THE ASYMMETRIC UNIT COINCIDES REMARK 300 WITH THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 LEU C 5 REMARK 465 LEU C 6 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ALA D 3 REMARK 465 THR D 4 REMARK 465 LEU D 5 REMARK 465 LEU D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 117 O HOH D 141 1.92 REMARK 500 NH2 ARG A 117 O HOH A 134 2.01 REMARK 500 O SER C 7 O HOH C 124 2.10 REMARK 500 NH2 ARG C 31 O ASN C 61 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 49 NE2 GLN B 100 2656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 109 -168.45 -119.75 REMARK 500 HIS B 12 116.12 -164.42 REMARK 500 VAL B 35 -82.23 102.03 REMARK 500 SER B 37 40.52 -83.51 REMARK 500 VAL C 35 -73.23 84.79 REMARK 500 VAL D 35 -53.19 -121.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 TRANSTHYRETIN (HUMAN) DBREF 2H1X A 1 119 UNP Q0P422 Q0P422_BRARE 1 95 DBREF 2H1X B 1 119 UNP Q0P422 Q0P422_BRARE 1 95 DBREF 2H1X C 1 119 UNP Q0P422 Q0P422_BRARE 1 95 DBREF 2H1X D 1 119 UNP Q0P422 Q0P422_BRARE 1 95 SEQADV 2H1X ALA A 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU A 6 UNP Q0P422 PRO 25 VARIANT SEQADV 2H1X ALA B 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU B 6 UNP Q0P422 PRO 25 VARIANT SEQADV 2H1X ALA C 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU C 6 UNP Q0P422 PRO 25 VARIANT SEQADV 2H1X ALA D 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU D 6 UNP Q0P422 PRO 25 VARIANT SEQRES 1 A 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 A 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 A 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 A 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 A 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 A 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 A 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 A 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 A 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 A 119 GLY SER SEQRES 1 B 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 B 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 B 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 B 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 B 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 B 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 B 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 B 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 B 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 B 119 GLY SER SEQRES 1 C 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 C 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 C 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 C 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 C 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 C 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 C 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 C 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 C 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 C 119 GLY SER SEQRES 1 D 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 D 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 D 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 D 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 D 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 D 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 D 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 D 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 D 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 D 119 GLY SER FORMUL 5 HOH *121(H2 O) HELIX 1 1 GLU A 72 ALA A 79 1 8 HELIX 2 2 THR B 58 PHE B 62 5 5 HELIX 3 3 GLU B 72 ALA B 79 1 8 HELIX 4 4 THR C 58 PHE C 62 5 5 HELIX 5 5 GLU C 72 LEU C 80 1 9 HELIX 6 6 GLU D 72 ALA D 79 1 8 SHEET 1 A 2 LEU A 9 SER A 10 0 SHEET 2 A 2 TYR A 102 HIS A 103 1 O TYR A 102 N SER A 10 SHEET 1 B 8 VAL A 20 PRO A 21 0 SHEET 2 B 8 VAL A 13 ASN A 15 -1 N ASN A 15 O VAL A 20 SHEET 3 B 8 LEU A 106 LEU A 108 1 O LEU A 108 N LEU A 14 SHEET 4 B 8 SER A 112 TYR A 116 -1 O SER A 114 N LEU A 107 SHEET 5 B 8 SER B 112 TYR B 116 -1 O TYR B 113 N THR A 115 SHEET 6 B 8 LEU B 106 SER B 109 -1 N LEU B 107 O SER B 114 SHEET 7 B 8 VAL B 13 ASN B 15 1 N LEU B 14 O LEU B 108 SHEET 8 B 8 VAL B 20 PRO B 21 -1 O VAL B 20 N ASN B 15 SHEET 1 C 4 TRP A 39 ILE A 46 0 SHEET 2 C 4 THR A 26 LEU A 32 -1 N ILE A 27 O GLY A 45 SHEET 3 C 4 GLY A 65 PHE A 71 -1 O VAL A 66 N LEU A 32 SHEET 4 C 4 VAL A 89 ILE A 95 -1 O VAL A 89 N PHE A 71 SHEET 1 D 2 LEU B 9 SER B 10 0 SHEET 2 D 2 TYR B 102 HIS B 103 1 O TYR B 102 N SER B 10 SHEET 1 E 4 TRP B 39 ILE B 46 0 SHEET 2 E 4 THR B 26 LEU B 32 -1 N LEU B 29 O LEU B 42 SHEET 3 E 4 GLY B 65 PHE B 71 -1 O LYS B 68 N HIS B 30 SHEET 4 E 4 VAL B 89 ILE B 95 -1 O VAL B 89 N PHE B 71 SHEET 1 F 2 LEU C 9 SER C 10 0 SHEET 2 F 2 TYR C 102 HIS C 103 1 O TYR C 102 N SER C 10 SHEET 1 G 8 VAL C 20 PRO C 21 0 SHEET 2 G 8 VAL C 13 ASN C 15 -1 N ASN C 15 O VAL C 20 SHEET 3 G 8 LEU C 106 LEU C 108 1 O LEU C 108 N LEU C 14 SHEET 4 G 8 SER C 112 TYR C 116 -1 O SER C 114 N LEU C 107 SHEET 5 G 8 SER D 112 TYR D 116 -1 O THR D 115 N TYR C 113 SHEET 6 G 8 LEU D 106 SER D 109 -1 N LEU D 107 O SER D 114 SHEET 7 G 8 VAL D 13 ASN D 15 1 N LEU D 14 O LEU D 108 SHEET 8 G 8 VAL D 20 PRO D 21 -1 O VAL D 20 N ASN D 15 SHEET 1 H 4 TRP C 39 ILE C 46 0 SHEET 2 H 4 THR C 26 LEU C 32 -1 N ILE C 27 O GLY C 45 SHEET 3 H 4 GLY C 65 PHE C 71 -1 O LYS C 68 N HIS C 30 SHEET 4 H 4 VAL C 89 ILE C 95 -1 O VAL C 89 N PHE C 71 SHEET 1 I 2 LEU D 9 SER D 10 0 SHEET 2 I 2 TYR D 102 HIS D 103 1 O TYR D 102 N SER D 10 SHEET 1 J 4 TRP D 39 ILE D 46 0 SHEET 2 J 4 THR D 26 LEU D 32 -1 N LEU D 29 O THR D 43 SHEET 3 J 4 GLY D 65 PHE D 71 -1 O VAL D 66 N LEU D 32 SHEET 4 J 4 VAL D 89 ILE D 95 -1 O VAL D 89 N PHE D 71 CISPEP 1 SER A 7 PRO A 8 0 -6.23 CISPEP 2 SER B 7 PRO B 8 0 -12.41 CISPEP 3 SER C 7 PRO C 8 0 -13.59 CISPEP 4 SER D 7 PRO D 8 0 -9.74 CRYST1 58.078 64.135 58.937 90.00 94.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017218 0.000000 0.001204 0.00000 SCALE2 0.000000 0.015592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017009 0.00000 MASTER 355 0 0 6 40 0 0 6 0 0 0 40 END