HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-MAY-06 2GZX TITLE CRYSTAL STRUCTURE OF THE TATD DEOXYRIBONUCLEASE MW0446 FROM TITLE 2 STAPHYLOCOCCUS AUREUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET ZR237. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TATD RELATED DNASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: MW0446; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21 KEYWDS TATD, DNASE, DEOXYRIBONUCLEASE, NESG, ZR237, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.M.VOROBIEV,H.NEELY,J.SEETHARAMAN,D.WANG,Y.FANG,R.XIAO,T.ACTON, AUTHOR 2 G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 25-OCT-17 2GZX 1 REMARK REVDAT 4 11-OCT-17 2GZX 1 REMARK REVDAT 3 13-JUL-11 2GZX 1 VERSN REVDAT 2 24-FEB-09 2GZX 1 VERSN REVDAT 1 11-JUL-06 2GZX 0 JRNL AUTH S.M.VOROBIEV,H.NEELY,J.SEETHARAMAN,D.WANG,Y.FANG,R.XIAO, JRNL AUTH 2 T.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE TATD DEOXYRIBONUCLEASE MW0446 FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET ZR237. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 307133.380 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 51275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7671 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 326 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.23000 REMARK 3 B22 (A**2) : -5.13000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 26.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 26.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 AMMONIUM ACETATE, 5 REMARK 280 MM MAGNESIUM CHLORIDE, 0.1 M TRISHCL, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.66200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO AGGREGATION SCREENING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 255 REMARK 465 ASN A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 MSE B 1 REMARK 465 LEU B 255 REMARK 465 ASN B 256 REMARK 465 SER B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 ASP B 15 CG OD1 OD2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 ASN B 254 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 92 CB GLU A 92 CG -0.291 REMARK 500 GLU B 92 CB GLU B 92 CG -0.177 REMARK 500 MSE B 93 SE MSE B 93 CE -0.369 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 91 CA - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 GLY A 91 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 GLU A 92 C - N - CA ANGL. DEV. = 21.8 DEGREES REMARK 500 GLU A 92 N - CA - CB ANGL. DEV. = 17.3 DEGREES REMARK 500 GLU A 92 CA - CB - CG ANGL. DEV. = -26.0 DEGREES REMARK 500 GLU A 92 CB - CG - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 GLU A 92 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 GLY B 91 CA - C - N ANGL. DEV. = -22.4 DEGREES REMARK 500 GLU B 92 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 GLU B 92 N - CA - CB ANGL. DEV. = 14.9 DEGREES REMARK 500 GLU B 92 CA - CB - CG ANGL. DEV. = -19.6 DEGREES REMARK 500 THR B 203 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 98.00 -162.81 REMARK 500 GLU A 92 84.05 61.81 REMARK 500 ALA A 132 31.30 -141.82 REMARK 500 ASN A 170 54.17 -97.27 REMARK 500 PRO A 212 33.50 -94.32 REMARK 500 HIS B 8 68.37 -104.73 REMARK 500 LEU B 18 -68.73 -27.24 REMARK 500 GLU B 92 80.91 58.17 REMARK 500 PHE B 155 118.60 -37.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 91 -13.99 REMARK 500 GLY B 91 -15.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 299 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 374 O REMARK 620 2 HIS A 153 NE2 95.0 REMARK 620 3 HIS A 128 ND1 85.2 93.4 REMARK 620 4 GLU A 92 OE2 138.5 73.5 56.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 300 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 204 OD1 REMARK 620 2 HIS A 8 NE2 82.6 REMARK 620 3 HIS A 6 NE2 82.9 106.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 297 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 92 OE1 REMARK 620 2 HIS B 8 NE2 95.7 REMARK 620 3 HIS B 6 NE2 93.1 103.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 298 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 128 ND1 REMARK 620 2 HIS B 153 NE2 91.0 REMARK 620 3 GLU B 92 OE2 63.2 61.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ZR237 RELATED DB: TARGETDB DBREF 2GZX A 1 257 UNP Q1Y6Z0 Q1Y6Z0_STAAU 1 257 DBREF 2GZX B 1 257 UNP Q1Y6Z0 Q1Y6Z0_STAAU 1 257 SEQADV 2GZX MSE A 1 UNP Q1Y6Z0 MET 1 MODIFIED RESIDUE SEQADV 2GZX MSE A 33 UNP Q1Y6Z0 MET 33 MODIFIED RESIDUE SEQADV 2GZX MSE A 47 UNP Q1Y6Z0 MET 47 MODIFIED RESIDUE SEQADV 2GZX MSE A 93 UNP Q1Y6Z0 MET 93 MODIFIED RESIDUE SEQADV 2GZX MSE A 152 UNP Q1Y6Z0 MET 152 MODIFIED RESIDUE SEQADV 2GZX MSE A 196 UNP Q1Y6Z0 MET 196 MODIFIED RESIDUE SEQADV 2GZX LEU A 258 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX GLU A 259 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 260 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 261 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 262 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 263 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 264 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 265 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX MSE B 1 UNP Q1Y6Z0 MET 1 MODIFIED RESIDUE SEQADV 2GZX MSE B 33 UNP Q1Y6Z0 MET 33 MODIFIED RESIDUE SEQADV 2GZX MSE B 47 UNP Q1Y6Z0 MET 47 MODIFIED RESIDUE SEQADV 2GZX MSE B 93 UNP Q1Y6Z0 MET 93 MODIFIED RESIDUE SEQADV 2GZX MSE B 152 UNP Q1Y6Z0 MET 152 MODIFIED RESIDUE SEQADV 2GZX MSE B 196 UNP Q1Y6Z0 MET 196 MODIFIED RESIDUE SEQADV 2GZX LEU B 258 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX GLU B 259 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 260 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 261 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 262 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 263 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 264 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 265 UNP Q1Y6Z0 EXPRESSION TAG SEQRES 1 A 265 MSE LEU ILE ASP THR HIS VAL HIS LEU ASN ASP GLU GLN SEQRES 2 A 265 TYR ASP ASP ASP LEU SER GLU VAL ILE THR ARG ALA ARG SEQRES 3 A 265 GLU ALA GLY VAL ASP ARG MSE PHE VAL VAL GLY PHE ASN SEQRES 4 A 265 LYS SER THR ILE GLU ARG ALA MSE LYS LEU ILE ASP GLU SEQRES 5 A 265 TYR ASP PHE LEU TYR GLY ILE ILE GLY TRP HIS PRO VAL SEQRES 6 A 265 ASP ALA ILE ASP PHE THR GLU GLU HIS LEU GLU TRP ILE SEQRES 7 A 265 GLU SER LEU ALA GLN HIS PRO LYS VAL ILE GLY ILE GLY SEQRES 8 A 265 GLU MSE GLY LEU ASP TYR HIS TRP ASP LYS SER PRO ALA SEQRES 9 A 265 ASP VAL GLN LYS GLU VAL PHE ARG LYS GLN ILE ALA LEU SEQRES 10 A 265 ALA LYS ARG LEU LYS LEU PRO ILE ILE ILE HIS ASN ARG SEQRES 11 A 265 GLU ALA THR GLN ASP CYS ILE ASP ILE LEU LEU GLU GLU SEQRES 12 A 265 HIS ALA GLU GLU VAL GLY GLY ILE MSE HIS SER PHE SER SEQRES 13 A 265 GLY SER PRO GLU ILE ALA ASP ILE VAL THR ASN LYS LEU SEQRES 14 A 265 ASN PHE TYR ILE SER LEU GLY GLY PRO VAL THR PHE LYS SEQRES 15 A 265 ASN ALA LYS GLN PRO LYS GLU VAL ALA LYS HIS VAL SER SEQRES 16 A 265 MSE GLU ARG LEU LEU VAL GLU THR ASP ALA PRO TYR LEU SEQRES 17 A 265 SER PRO HIS PRO TYR ARG GLY LYS ARG ASN GLU PRO ALA SEQRES 18 A 265 ARG VAL THR LEU VAL ALA GLU GLN ILE ALA GLU LEU LYS SEQRES 19 A 265 GLY LEU SER TYR GLU GLU VAL CYS GLU GLN THR THR LYS SEQRES 20 A 265 ASN ALA GLU LYS LEU PHE ASN LEU ASN SER LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MSE LEU ILE ASP THR HIS VAL HIS LEU ASN ASP GLU GLN SEQRES 2 B 265 TYR ASP ASP ASP LEU SER GLU VAL ILE THR ARG ALA ARG SEQRES 3 B 265 GLU ALA GLY VAL ASP ARG MSE PHE VAL VAL GLY PHE ASN SEQRES 4 B 265 LYS SER THR ILE GLU ARG ALA MSE LYS LEU ILE ASP GLU SEQRES 5 B 265 TYR ASP PHE LEU TYR GLY ILE ILE GLY TRP HIS PRO VAL SEQRES 6 B 265 ASP ALA ILE ASP PHE THR GLU GLU HIS LEU GLU TRP ILE SEQRES 7 B 265 GLU SER LEU ALA GLN HIS PRO LYS VAL ILE GLY ILE GLY SEQRES 8 B 265 GLU MSE GLY LEU ASP TYR HIS TRP ASP LYS SER PRO ALA SEQRES 9 B 265 ASP VAL GLN LYS GLU VAL PHE ARG LYS GLN ILE ALA LEU SEQRES 10 B 265 ALA LYS ARG LEU LYS LEU PRO ILE ILE ILE HIS ASN ARG SEQRES 11 B 265 GLU ALA THR GLN ASP CYS ILE ASP ILE LEU LEU GLU GLU SEQRES 12 B 265 HIS ALA GLU GLU VAL GLY GLY ILE MSE HIS SER PHE SER SEQRES 13 B 265 GLY SER PRO GLU ILE ALA ASP ILE VAL THR ASN LYS LEU SEQRES 14 B 265 ASN PHE TYR ILE SER LEU GLY GLY PRO VAL THR PHE LYS SEQRES 15 B 265 ASN ALA LYS GLN PRO LYS GLU VAL ALA LYS HIS VAL SER SEQRES 16 B 265 MSE GLU ARG LEU LEU VAL GLU THR ASP ALA PRO TYR LEU SEQRES 17 B 265 SER PRO HIS PRO TYR ARG GLY LYS ARG ASN GLU PRO ALA SEQRES 18 B 265 ARG VAL THR LEU VAL ALA GLU GLN ILE ALA GLU LEU LYS SEQRES 19 B 265 GLY LEU SER TYR GLU GLU VAL CYS GLU GLN THR THR LYS SEQRES 20 B 265 ASN ALA GLU LYS LEU PHE ASN LEU ASN SER LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS MODRES 2GZX MSE A 33 MET SELENOMETHIONINE MODRES 2GZX MSE A 47 MET SELENOMETHIONINE MODRES 2GZX MSE A 93 MET SELENOMETHIONINE MODRES 2GZX MSE A 152 MET SELENOMETHIONINE MODRES 2GZX MSE A 196 MET SELENOMETHIONINE MODRES 2GZX MSE B 33 MET SELENOMETHIONINE MODRES 2GZX MSE B 47 MET SELENOMETHIONINE MODRES 2GZX MSE B 93 MET SELENOMETHIONINE MODRES 2GZX MSE B 152 MET SELENOMETHIONINE MODRES 2GZX MSE B 196 MET SELENOMETHIONINE HET MSE A 33 8 HET MSE A 47 8 HET MSE A 93 8 HET MSE A 152 8 HET MSE A 196 8 HET MSE B 33 8 HET MSE B 47 8 HET MSE B 93 8 HET MSE B 152 8 HET MSE B 196 8 HET NI A 299 1 HET NI A 300 1 HET NI B 297 1 HET NI B 298 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NI 4(NI 2+) FORMUL 7 HOH *81(H2 O) HELIX 1 1 ASP A 11 ASP A 15 5 5 HELIX 2 2 ASP A 17 ALA A 28 1 12 HELIX 3 3 ASN A 39 TYR A 53 1 15 HELIX 4 4 HIS A 63 PHE A 70 5 8 HELIX 5 5 THR A 71 ALA A 82 1 12 HELIX 6 6 PRO A 103 LYS A 122 1 20 HELIX 7 7 ALA A 132 GLU A 143 1 12 HELIX 8 8 HIS A 144 VAL A 148 5 5 HELIX 9 9 SER A 158 LYS A 168 1 11 HELIX 10 10 GLY A 176 PHE A 181 5 6 HELIX 11 11 LYS A 185 VAL A 194 1 10 HELIX 12 12 GLU A 219 ALA A 221 5 3 HELIX 13 13 ARG A 222 LYS A 234 1 13 HELIX 14 14 SER A 237 ASN A 254 1 18 HELIX 15 15 ASP B 11 ASP B 15 5 5 HELIX 16 16 ASP B 17 ALA B 28 1 12 HELIX 17 17 ASN B 39 TYR B 53 1 15 HELIX 18 18 HIS B 63 PHE B 70 5 8 HELIX 19 19 THR B 71 ALA B 82 1 12 HELIX 20 20 PRO B 103 LYS B 122 1 20 HELIX 21 21 ALA B 132 GLU B 143 1 12 HELIX 22 22 HIS B 144 VAL B 148 5 5 HELIX 23 23 SER B 158 LYS B 168 1 11 HELIX 24 24 GLY B 176 PHE B 181 5 6 HELIX 25 25 LYS B 185 VAL B 194 1 10 HELIX 26 26 SER B 195 GLU B 197 5 3 HELIX 27 27 GLU B 219 ALA B 221 5 3 HELIX 28 28 ARG B 222 GLY B 235 1 14 HELIX 29 29 SER B 237 ASN B 254 1 18 SHEET 1 A 8 ILE A 3 VAL A 7 0 SHEET 2 A 8 ARG A 32 GLY A 37 1 O PHE A 34 N ASP A 4 SHEET 3 A 8 LEU A 56 ILE A 60 1 O TYR A 57 N VAL A 35 SHEET 4 A 8 VAL A 87 ASP A 96 1 O ILE A 88 N GLY A 58 SHEET 5 A 8 ILE A 125 ARG A 130 1 O HIS A 128 N MSE A 93 SHEET 6 A 8 GLY A 150 MSE A 152 1 O ILE A 151 N ILE A 127 SHEET 7 A 8 TYR A 172 LEU A 175 1 O TYR A 172 N GLY A 150 SHEET 8 A 8 LEU A 199 VAL A 201 1 O LEU A 200 N LEU A 175 SHEET 1 B 8 ILE B 3 VAL B 7 0 SHEET 2 B 8 ARG B 32 GLY B 37 1 O PHE B 34 N ASP B 4 SHEET 3 B 8 LEU B 56 ILE B 60 1 O TYR B 57 N VAL B 35 SHEET 4 B 8 VAL B 87 ASP B 96 1 O ILE B 88 N GLY B 58 SHEET 5 B 8 ILE B 125 ARG B 130 1 O HIS B 128 N MSE B 93 SHEET 6 B 8 GLY B 150 MSE B 152 1 O ILE B 151 N ILE B 127 SHEET 7 B 8 TYR B 172 LEU B 175 1 O TYR B 172 N GLY B 150 SHEET 8 B 8 LEU B 199 VAL B 201 1 O LEU B 200 N LEU B 175 LINK C ARG A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N PHE A 34 1555 1555 1.33 LINK C ALA A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N LYS A 48 1555 1555 1.33 LINK C GLU A 92 N MSE A 93 1555 1555 1.32 LINK C MSE A 93 N GLY A 94 1555 1555 1.33 LINK C ILE A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N HIS A 153 1555 1555 1.33 LINK C SER A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N GLU A 197 1555 1555 1.33 LINK NI NI A 299 O HOH A 374 1555 1555 2.11 LINK NI NI A 299 NE2 HIS A 153 1555 1555 2.35 LINK NI NI A 299 ND1 HIS A 128 1555 1555 2.44 LINK NI NI A 299 OE2 GLU A 92 1555 1555 2.41 LINK NI NI A 300 OD1 ASP A 204 1555 1555 2.39 LINK NI NI A 300 NE2 HIS A 8 1555 1555 2.23 LINK NI NI A 300 NE2 HIS A 6 1555 1555 2.12 LINK C ARG B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N PHE B 34 1555 1555 1.33 LINK C ALA B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N LYS B 48 1555 1555 1.33 LINK C GLU B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N GLY B 94 1555 1555 1.33 LINK C ILE B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N HIS B 153 1555 1555 1.33 LINK C SER B 195 N MSE B 196 1555 1555 1.32 LINK C MSE B 196 N GLU B 197 1555 1555 1.33 LINK NI NI B 297 OE1 GLU B 92 1555 1555 2.64 LINK NI NI B 297 NE2 HIS B 8 1555 1555 2.29 LINK NI NI B 297 NE2 HIS B 6 1555 1555 2.10 LINK NI NI B 298 ND1 HIS B 128 1555 1555 2.53 LINK NI NI B 298 NE2 HIS B 153 1555 1555 2.70 LINK NI NI B 298 OE2 GLU B 92 1555 1555 2.51 CISPEP 1 ALA A 205 PRO A 206 0 2.55 CISPEP 2 HIS A 211 PRO A 212 0 0.04 CISPEP 3 ALA B 205 PRO B 206 0 0.33 CISPEP 4 HIS B 211 PRO B 212 0 0.49 SITE 1 AC1 5 HIS B 6 HIS B 8 GLU B 92 ASP B 204 SITE 2 AC1 5 NI B 298 SITE 1 AC2 4 GLU B 92 HIS B 128 HIS B 153 NI B 297 SITE 1 AC3 7 GLU A 92 HIS A 128 HIS A 153 ASP A 204 SITE 2 AC3 7 NI A 300 HOH A 314 HOH A 374 SITE 1 AC4 5 HIS A 6 HIS A 8 GLU A 92 ASP A 204 SITE 2 AC4 5 NI A 299 CRYST1 46.678 77.324 76.129 90.00 98.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021423 0.000000 0.003015 0.00000 SCALE2 0.000000 0.012933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013265 0.00000 MASTER 414 0 14 29 16 0 7 6 0 0 0 42 END