HEADER DNA/STRUCTURAL PROTEIN 11-MAY-06 2GZK TITLE STRUCTURE OF A COMPLEX OF TANDEM HMG BOXES AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX-DETERMINING REGION ON Y / HMGB1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'- COMPND 7 D(*GP*GP*GP*AP*TP*CP*TP*AP*AP*AP*CP*AP*AP*TP*GP*C)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'- COMPND 12 D(*GP*CP*AP*TP*TP*GP*TP*TP*TP*AP*GP*AP*TP*CP*CP*C)-3'; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, RATTUS RATTUS; SOURCE 3 ORGANISM_COMMON: HUMAN, BLACK RAT; SOURCE 4 ORGANISM_TAXID: 9606,10117; SOURCE 5 STRAIN: ,; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, HMG BOX, AMPHOTERIN, DNA/STRUCTURAL KEYWDS 2 PROTEIN COMPLEX EXPDTA SOLUTION NMR AUTHOR K.STOTT,G.S.TANG,K.B.LEE,J.O.THOMAS REVDAT 2 24-FEB-09 2GZK 1 VERSN REVDAT 1 25-JUL-06 2GZK 0 JRNL AUTH K.STOTT,G.S.TANG,K.B.LEE,J.O.THOMAS JRNL TITL STRUCTURE OF A COMPLEX OF TANDEM HMG BOXES AND DNA. JRNL REF J.MOL.BIOL. V. 360 90 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16813837 JRNL DOI 10.1016/J.JMB.2006.04.059 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GZK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037742. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 10MM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SRY.B U-15N,13C, 1MM 16- REMARK 210 MER DNA, 10MM PHOSPHATE REMARK 210 BUFFER, PH 6.8, 1MM EDTA, 2MM REMARK 210 DTT U-2H, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HSQC, 3D HN(CO)CA, HNCA-J, REMARK 210 3D CBCA(CO)NH, 3D HNCACB, 3D REMARK 210 HNCO, 3D (H)CC(CO)NH-TOCSY, 3D REMARK 210 TOCSY-15N-HSQC, 3D NOESY-15N- REMARK 210 HSQC, 3D HC(C)H-TOCSY, 3D REMARK 210 NOESY-13C-HSQC, HNHA, 2D REMARK 210 TOCSY, DQF-COSY, 2D NOESY, REMARK 210 [F1]-13C/15N-FILTERED TOCSY REMARK 210 [F1]-13C/15N-FILTERED TOCSY, REMARK 210 2D [F1]-13C/15N-FILTERED DQF REMARK 210 COSY, 2D [F1]-13C/15N-FILTERED REMARK 210 NOESY, 3D [F1]-13C/15N- REMARK 210 FILTERED NOESY-13C-HSQC, 2D REMARK 210 [F1,F2]-13C/15N-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.7, AZARA 2.7, REMARK 210 ANALYSIS 1.0, CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 46.94 -84.37 REMARK 500 MET A 30 50.89 34.12 REMARK 500 ASN A 71 -52.94 -130.15 REMARK 500 LYS A 76 98.74 -67.28 REMARK 500 GLU A 78 -118.11 -73.12 REMARK 500 THR A 79 -127.19 -174.34 REMARK 500 LYS A 81 37.80 -88.68 REMARK 500 PRO A 112 49.94 -77.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7105 RELATED DB: BMRB REMARK 900 NMR CHEMICAL SHIFT ASSIGNMENTS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS A CHIMERIC PROTEIN, A HYBRID, MADE FROM REMARK 999 THE HMG-BOX DOMAIN FROM HUMAN SRY, COMPRISING RESIDUES REMARK 999 56-130 FOLLOWED BY RESIDUES 82-165 OF RAT HMGB1 DBREF 2GZK A 1 75 UNP Q6J4I5 Q6J415_HUMAN 56 130 DBREF 2GZK A 76 159 UNP Q548R9 Q548R9_RAT 82 165 DBREF 2GZK B 201 216 PDB 2GZK 2GZK 201 216 DBREF 2GZK C 217 232 PDB 2GZK 2GZK 217 232 SEQRES 1 A 159 VAL GLN ASP ARG VAL LYS ARG PRO MET ASN ALA PHE ILE SEQRES 2 A 159 VAL TRP SER ARG ASP GLN ARG ARG LYS MET ALA LEU GLU SEQRES 3 A 159 ASN PRO ARG MET ARG ASN SER GLU ILE SER LYS GLN LEU SEQRES 4 A 159 GLY TYR GLN TRP LYS MET LEU THR GLU ALA GLU LYS TRP SEQRES 5 A 159 PRO PHE PHE GLN GLU ALA GLN LYS LEU GLN ALA MET HIS SEQRES 6 A 159 ARG GLU LYS TYR PRO ASN TYR LYS TYR ARG LYS GLY GLU SEQRES 7 A 159 THR LYS LYS LYS PHE LYS ASP PRO ASN ALA PRO LYS ARG SEQRES 8 A 159 PRO PRO SER ALA PHE PHE LEU PHE CYS SER GLU TYR ARG SEQRES 9 A 159 PRO LYS ILE LYS GLY GLU HIS PRO GLY LEU SER ILE GLY SEQRES 10 A 159 ASP VAL ALA LYS LYS LEU GLY GLU MET TRP ASN ASN THR SEQRES 11 A 159 ALA ALA ASP ASP LYS GLN PRO TYR GLU LYS LYS ALA ALA SEQRES 12 A 159 LYS LEU LYS GLU LYS TYR GLU LYS ASP ILE ALA ALA TYR SEQRES 13 A 159 ARG ALA LYS SEQRES 1 B 16 DG DG DG DA DT DC DT DA DA DA DC DA DA SEQRES 2 B 16 DT DG DC SEQRES 1 C 16 DG DC DA DT DT DG DT DT DT DA DG DA DT SEQRES 2 C 16 DC DC DC HELIX 1 1 ASN A 10 ASN A 27 1 18 HELIX 2 2 ARG A 31 LEU A 46 1 16 HELIX 3 3 THR A 47 TYR A 69 1 23 HELIX 4 4 THR A 79 PHE A 83 5 5 HELIX 5 5 SER A 94 HIS A 111 1 18 HELIX 6 6 SER A 115 THR A 130 1 16 HELIX 7 7 ALA A 131 ALA A 158 1 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 97 0 0 7 0 0 0 6 0 0 0 17 END