HEADER HYDROLASE 09-MAY-06 2GXS TITLE HERA N-TERMINAL DOMAIN IN COMPLEX WITH AMP, CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB-27; SOURCE 5 GENE: HERA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET27B KEYWDS RNA HELICASE, ATOMIC RESOLUTION, AMP COMPLEX, RIBOSOME BIOGENESIS, KEYWDS 2 THERMOPHILIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 4 18-OCT-17 2GXS 1 REMARK REVDAT 3 13-JUL-11 2GXS 1 VERSN REVDAT 2 24-FEB-09 2GXS 1 VERSN REVDAT 1 22-AUG-06 2GXS 0 JRNL AUTH M.G.RUDOLPH,R.HEISSMANN,J.G.WITTMANN,D.KLOSTERMEIER JRNL TITL CRYSTAL STRUCTURE AND NUCLEOTIDE BINDING OF THE THERMUS JRNL TITL 2 THERMOPHILUS RNA HELICASE HERA N-TERMINAL DOMAIN. JRNL REF J.MOL.BIOL. V. 351 731 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16890241 JRNL DOI 10.1016/J.JMB.2006.06.065 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 43198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2302 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.5220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3419 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2389 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4691 ; 1.710 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5881 ; 1.058 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.433 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;13.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 560 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3769 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 652 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 752 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2668 ; 0.216 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1661 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1872 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.195 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.292 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2213 ; 1.119 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 852 ; 0.252 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3481 ; 1.632 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 2.511 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1183 ; 3.865 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG6000, 0.3M CACL2, 0.1M TRIS/HCL REMARK 280 PH9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.28200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.41900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.28200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.41900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS STATE THE BIOLOGICAL UNIT IS EITHER A MONOMER REMARK 300 OR A DIMER AS SHOWN IN REMARK 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 207 CA C O CB CG CD CE REMARK 470 LYS A 207 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 110 OD2 ASP A 133 1.85 REMARK 500 O GLY A 109 O HOH A 642 2.09 REMARK 500 OE2 GLU A 152 O HOH A 764 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 96 62.91 -117.83 REMARK 500 SER B 182 118.56 -162.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 754 O REMARK 620 2 HOH A 765 O 64.9 REMARK 620 3 GLY A 160 O 77.2 141.2 REMARK 620 4 GLU A 163 OE1 95.9 110.4 80.4 REMARK 620 5 GLU A 164 OE1 160.0 131.9 84.0 87.7 REMARK 620 6 GLU A 164 OE2 140.9 82.9 126.7 116.6 49.8 REMARK 620 7 HOH A 716 O 77.3 82.8 81.1 161.3 93.0 77.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 675 O REMARK 620 2 HOH A 752 O 70.6 REMARK 620 3 HOH B 719 O 82.2 77.2 REMARK 620 4 HOH B 850 O 99.9 146.5 69.6 REMARK 620 5 HOH B 829 O 156.4 131.7 94.6 57.4 REMARK 620 6 HOH B 899 O 105.4 149.7 132.8 63.2 60.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 129 N REMARK 620 2 HOH A 616 O 124.6 REMARK 620 3 ARG A 130 N 52.8 162.8 REMARK 620 4 THR A 127 OG1 102.6 73.1 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 706 O REMARK 620 2 HOH B 882 O 75.8 REMARK 620 3 GLU B 164 OE1 157.1 95.8 REMARK 620 4 GLU B 164 OE2 136.2 61.7 46.3 REMARK 620 5 GLY B 160 O 69.0 83.5 89.1 113.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 130 N REMARK 620 2 THR B 127 OG1 83.9 REMARK 620 3 HOH B 754 O 99.5 101.3 REMARK 620 4 GLY B 129 N 52.6 99.0 143.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GXQ RELATED DB: PDB REMARK 900 HERA N-TERMINAL DOMAIN IN COMPLEX WITH AMP, CRYSTAL FORM 1 REMARK 900 RELATED ID: 2GXU RELATED DB: PDB REMARK 900 HERA N-TERMINAL DOMAIN IN COMPLEX WITH ORTHOPHOSPHATE, CRYSTAL FORM REMARK 900 1 DBREF 2GXS A 1 207 UNP O07897 O07897_THETH 1 207 DBREF 2GXS B 1 207 UNP O07897 O07897_THETH 1 207 SEQRES 1 A 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 A 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 A 207 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 A 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 A 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 A 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 A 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 A 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 A 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 A 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 A 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 A 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 A 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 A 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 A 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 A 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS SEQRES 1 B 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 B 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 B 207 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 B 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 B 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 B 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 B 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 B 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 B 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 B 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 B 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 B 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 B 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 B 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 B 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 B 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET AMP A 501 23 HET CA B 604 1 HET CA B 605 1 HET AMP B 502 23 HET GOL B 701 6 HETNAM CA CALCIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 5(CA 2+) FORMUL 6 AMP 2(C10 H14 N5 O7 P) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *406(H2 O) HELIX 1 1 GLU A 2 PHE A 6 5 5 HELIX 2 2 LYS A 9 ARG A 19 1 11 HELIX 3 3 THR A 25 LEU A 36 1 12 HELIX 4 4 GLY A 50 LEU A 63 1 14 HELIX 5 5 THR A 81 ALA A 96 1 16 HELIX 6 6 TYR A 110 GLY A 120 1 11 HELIX 7 7 THR A 127 GLN A 137 1 11 HELIX 8 8 GLU A 152 MET A 159 1 8 HELIX 9 9 PHE A 161 ALA A 171 1 11 HELIX 10 10 PRO A 186 MET A 197 1 12 HELIX 11 11 GLU B 2 PHE B 6 5 5 HELIX 12 12 LYS B 9 ARG B 19 1 11 HELIX 13 13 THR B 25 LEU B 36 1 12 HELIX 14 14 GLY B 50 LEU B 63 1 14 HELIX 15 15 THR B 81 ALA B 96 1 16 HELIX 16 16 TYR B 110 GLY B 120 1 11 HELIX 17 17 THR B 127 GLN B 137 1 11 HELIX 18 18 GLU B 152 MET B 159 1 8 HELIX 19 19 PHE B 161 ALA B 171 1 11 HELIX 20 20 PRO B 186 MET B 197 1 12 SHEET 1 A14 VAL A 101 VAL A 104 0 SHEET 2 A14 ALA A 123 ALA A 126 1 O ALA A 123 N VAL A 102 SHEET 3 A14 ALA A 75 LEU A 78 1 N VAL A 77 O ALA A 126 SHEET 4 A14 VAL A 147 LEU A 150 1 O VAL A 149 N LEU A 78 SHEET 5 A14 GLN A 177 PHE A 181 1 O PHE A 181 N LEU A 150 SHEET 6 A14 LEU A 41 GLN A 44 1 N GLY A 43 O LEU A 180 SHEET 7 A14 VAL A 201 ASN A 204 1 O ILE A 203 N GLN A 44 SHEET 8 A14 VAL B 201 VAL B 205 -1 O ASN B 204 N LEU A 202 SHEET 9 A14 LEU B 41 GLN B 44 1 N GLN B 44 O ILE B 203 SHEET 10 A14 GLN B 177 PHE B 181 1 O LEU B 180 N GLY B 43 SHEET 11 A14 VAL B 147 LEU B 150 1 N LEU B 150 O PHE B 181 SHEET 12 A14 ALA B 75 LEU B 78 1 N LEU B 78 O VAL B 149 SHEET 13 A14 ALA B 123 ALA B 126 1 O ALA B 126 N VAL B 77 SHEET 14 A14 VAL B 101 VAL B 104 1 N VAL B 104 O VAL B 125 LINK CA CA A 601 O HOH A 754 1555 1555 2.50 LINK CA CA A 601 O HOH A 765 1555 1555 2.55 LINK CA CA A 601 O GLY A 160 1555 1555 2.31 LINK CA CA A 601 OE1 GLU A 163 1555 1555 2.45 LINK CA CA A 601 OE1 GLU A 164 1555 1555 2.50 LINK CA CA A 601 OE2 GLU A 164 1555 1555 2.64 LINK CA CA A 601 O HOH A 716 1555 1555 2.42 LINK CA CA A 602 O HOH A 675 1555 1555 2.47 LINK CA CA A 602 O HOH A 752 1555 1555 2.60 LINK CA CA A 602 O HOH B 719 1555 1555 2.34 LINK CA CA A 602 O HOH B 850 1555 1555 3.03 LINK CA CA A 602 O HOH B 829 1555 1555 2.45 LINK CA CA A 602 O HOH B 899 1555 1555 2.80 LINK CA CA A 603 N GLY A 129 1555 1555 3.15 LINK CA CA A 603 O HOH A 616 1555 1555 3.30 LINK CA CA A 603 N ARG A 130 1555 1555 3.26 LINK CA CA A 603 OG1 THR A 127 1555 1555 3.00 LINK CA CA B 604 O HOH B 706 1555 1555 2.05 LINK CA CA B 604 O HOH B 882 1555 1555 2.51 LINK CA CA B 604 OE1 GLU B 164 1555 1555 2.68 LINK CA CA B 604 OE2 GLU B 164 1555 1555 2.95 LINK CA CA B 604 O GLY B 160 1555 1555 2.49 LINK CA CA B 605 N ARG B 130 1555 1555 3.28 LINK CA CA B 605 OG1 THR B 127 1555 1555 2.98 LINK CA CA B 605 O HOH B 754 1555 1555 3.05 LINK CA CA B 605 N GLY B 129 1555 1555 3.27 SITE 1 AC1 6 GLY A 160 GLU A 163 GLU A 164 HOH A 716 SITE 2 AC1 6 HOH A 754 HOH A 765 SITE 1 AC2 6 HOH A 675 HOH A 752 HOH B 719 HOH B 829 SITE 2 AC2 6 HOH B 850 HOH B 899 SITE 1 AC3 3 THR A 127 GLY A 129 ARG A 130 SITE 1 AC4 4 GLY B 160 GLU B 164 HOH B 706 HOH B 882 SITE 1 AC5 4 THR B 127 GLY B 129 ARG B 130 HOH B 754 SITE 1 AC6 17 PHE A 3 LEU A 21 THR A 23 GLN A 28 SITE 2 AC6 17 THR A 47 GLY A 48 THR A 49 GLY A 50 SITE 3 AC6 17 LYS A 51 THR A 52 HOH A 609 HOH A 638 SITE 4 AC6 17 HOH A 641 HOH A 656 HOH A 709 HOH A 744 SITE 5 AC6 17 HOH A 796 SITE 1 AC7 12 PHE B 3 LEU B 21 THR B 23 GLN B 28 SITE 2 AC7 12 GLY B 48 THR B 49 GLY B 50 LYS B 51 SITE 3 AC7 12 THR B 52 HOH B 721 HOH B 736 HOH B 823 SITE 1 AC8 7 THR A 93 PRO A 97 HOH A 688 GLY B 129 SITE 2 AC8 7 ARG B 130 ASP B 133 HOH B 754 CRYST1 136.564 42.838 68.645 90.00 100.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007323 0.000000 0.001299 0.00000 SCALE2 0.000000 0.023344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014795 0.00000 MASTER 373 0 8 20 14 0 17 6 0 0 0 32 END