HEADER TRANSPORT PROTEIN 03-MAY-06 2GVP TITLE SOLUTION STRUCTURE OF HUMAN APO SCO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCO1 PROTEIN HOMOLOG, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 132-301); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCO1, SCOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG-30A KEYWDS THIOREDOXIN-LIKE FOLD, METALLOPROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL PROTEOMICS IN EUROPE, SPINE, TRANSPORT PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR L.BANCI,I.BERTINI,V.CALDERONE,S.CIOFI-BAFFONI,S.MANGANI, AUTHOR 2 P.PAULMAA,M.MARTINELLI,S.WANG,STRUCTURAL PROTEOMICS IN AUTHOR 3 EUROPE (SPINE) REVDAT 3 24-FEB-09 2GVP 1 VERSN REVDAT 2 20-JUN-06 2GVP 1 JRNL REVDAT 1 06-JUN-06 2GVP 0 JRNL AUTH L.BANCI,I.BERTINI,V.CALDERONE,S.CIOFI-BAFFONI, JRNL AUTH 2 S.MANGANI,M.MARTINELLI,P.PALUMAA,S.WANG JRNL TITL A HINT FOR THE FUNCTION OF HUMAN SCO1 FROM JRNL TITL 2 DIFFERENT STRUCTURES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 8595 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16735468 JRNL DOI 10.1073/PNAS.0601375103 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GVP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037605. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 50MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HUMAN SCO1 U-15N,13C, REMARK 210 50MM PHOSPHATE BUFFER NA, 90% REMARK 210 H2O, 10% D2O; 1MM HUMAN SCO1 U REMARK 210 -15N, 50MM PHOSPHATE BUFFER REMARK 210 NA, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, CBCA(CO) REMARK 210 NH, HNCA, HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, CARA 2.1, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 231 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 242 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ILE A 257 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 VAL A 258 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 130 98.78 43.69 REMARK 500 THR A 131 164.22 69.42 REMARK 500 PRO A 134 -114.25 -76.02 REMARK 500 LEU A 135 -173.66 63.04 REMARK 500 SER A 141 26.03 -140.99 REMARK 500 ASP A 171 -144.00 -152.63 REMARK 500 ILE A 187 -61.35 -128.16 REMARK 500 THR A 191 -42.25 76.36 REMARK 500 ARG A 207 -11.63 -169.13 REMARK 500 TYR A 244 -95.57 -171.83 REMARK 500 PRO A 249 41.20 20.39 REMARK 500 ASP A 251 -118.75 80.83 REMARK 500 GLU A 252 -94.49 -155.02 REMARK 500 ASP A 255 98.29 151.47 REMARK 500 TYR A 256 -38.35 178.09 REMARK 500 ILE A 257 125.48 104.25 REMARK 500 VAL A 258 -19.82 72.33 REMARK 500 ASP A 259 138.32 82.58 REMARK 500 GLU A 272 -151.36 -110.69 REMARK 500 LEU A 274 -43.46 -141.04 REMARK 500 GLN A 279 -58.77 72.59 REMARK 500 LYS A 283 -60.11 -24.66 REMARK 500 LYS A 299 -177.19 -67.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 133 PRO A 134 143.75 REMARK 500 LEU A 136 GLY A 137 65.24 REMARK 500 ASP A 270 GLY A 271 -144.26 REMARK 500 ASN A 280 LYS A 281 146.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 149 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GQK RELATED DB: PDB REMARK 900 THE FAMILY OF 30 STRUCTURES OF THE SAME PROTEIN COMPLEXED REMARK 900 WITH NI(II) IONS. REMARK 900 RELATED ID: 2GQL RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE OF THE SAME PROTEIN COMPLEXED REMARK 900 WITH NI(II) IONS. REMARK 900 RELATED ID: 2GQM RELATED DB: PDB REMARK 900 THE FAMILY OF 30 STRUCTURES OF THE SAME PROTEIN COMPLEXED REMARK 900 WITH CU(I) IONS. REMARK 900 RELATED ID: 2GT6 RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE OF THE SAME PROTEIN COMPLEXED REMARK 900 WITH CU(I) IONS. REMARK 900 RELATED ID: 2GT5 RELATED DB: PDB REMARK 900 THE FAMILY OF 30 STRUCTURES OF THE SAME PROTEIN, APO FORM. REMARK 900 RELATED ID: CIRMMP13 RELATED DB: TARGETDB DBREF 2GVP A 132 301 UNP O75880 SCO1_HUMAN 132 301 SEQADV 2GVP SER A 129 UNP O75880 CLONING ARTIFACT SEQADV 2GVP PHE A 130 UNP O75880 CLONING ARTIFACT SEQADV 2GVP THR A 131 UNP O75880 CLONING ARTIFACT SEQRES 1 A 173 SER PHE THR GLY LYS PRO LEU LEU GLY GLY PRO PHE SER SEQRES 2 A 173 LEU THR THR HIS THR GLY GLU ARG LYS THR ASP LYS ASP SEQRES 3 A 173 TYR LEU GLY GLN TRP LEU LEU ILE TYR PHE GLY PHE THR SEQRES 4 A 173 HIS CYS PRO ASP VAL CYS PRO GLU GLU LEU GLU LYS MET SEQRES 5 A 173 ILE GLN VAL VAL ASP GLU ILE ASP SER ILE THR THR LEU SEQRES 6 A 173 PRO ASP LEU THR PRO LEU PHE ILE SER ILE ASP PRO GLU SEQRES 7 A 173 ARG ASP THR LYS GLU ALA ILE ALA ASN TYR VAL LYS GLU SEQRES 8 A 173 PHE SER PRO LYS LEU VAL GLY LEU THR GLY THR ARG GLU SEQRES 9 A 173 GLU VAL ASP GLN VAL ALA ARG ALA TYR ARG VAL TYR TYR SEQRES 10 A 173 SER PRO GLY PRO LYS ASP GLU ASP GLU ASP TYR ILE VAL SEQRES 11 A 173 ASP HIS THR ILE ILE MET TYR LEU ILE GLY PRO ASP GLY SEQRES 12 A 173 GLU PHE LEU ASP TYR PHE GLY GLN ASN LYS ARG LYS GLY SEQRES 13 A 173 GLU ILE ALA ALA SER ILE ALA THR HIS MET ARG PRO TYR SEQRES 14 A 173 ARG LYS LYS SER HELIX 1 1 PRO A 174 SER A 189 1 16 HELIX 2 2 THR A 209 SER A 221 1 13 HELIX 3 3 THR A 230 TYR A 241 1 12 HELIX 4 4 LYS A 283 ARG A 295 1 13 SHEET 1 A 6 THR A 143 THR A 144 0 SHEET 2 A 6 VAL A 225 THR A 228 -1 O THR A 228 N THR A 143 SHEET 3 A 6 LEU A 196 SER A 202 1 N PRO A 198 O VAL A 225 SHEET 4 A 6 TRP A 159 GLY A 165 1 N LEU A 161 O LEU A 199 SHEET 5 A 6 ILE A 263 ILE A 267 -1 O ILE A 267 N LEU A 160 SHEET 6 A 6 PHE A 273 GLY A 278 -1 O PHE A 277 N MET A 264 CISPEP 1 SER A 129 PHE A 130 0 8.88 CISPEP 2 PRO A 170 ASP A 171 0 -2.30 CISPEP 3 PRO A 247 GLY A 248 0 14.86 CISPEP 4 LYS A 250 ASP A 251 0 -3.46 CISPEP 5 ASP A 255 TYR A 256 0 -25.00 CISPEP 6 TYR A 256 ILE A 257 0 -14.09 CISPEP 7 ILE A 257 VAL A 258 0 -27.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 165 0 0 4 6 0 0 6 0 0 0 14 END