HEADER ISOMERASE 28-APR-06 2GTV TITLE NMR STRUCTURE OF MONOMERIC CHORISMATE MUTASE FROM TITLE 2 METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE MUTASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CM; HYPOTHETICAL PROTEIN MJ0246; COMPND 5 EC: 5.4.99.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: KA13; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FOUR-HELIX BUNDLE, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.R.VOGELI REVDAT 3 22-JUL-08 2GTV 1 VERSN JRNL REVDAT 2 20-NOV-07 2GTV 1 JRNL REVDAT 1 31-OCT-06 2GTV 0 JRNL AUTH K.PERVUSHIN,K.VAMVACA,B.VOGELI,D.HILVERT JRNL TITL STRUCTURE AND DYNAMICS OF A MOLTEN GLOBULAR ENZYME. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 1202 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17994104 JRNL DOI 10.1038/NSMB1325 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR X-PLOR-NIH 2.9 4A REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GTV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037542. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50MM NACL; 50MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM U-15N,13C, 20MM SODIUM REMARK 210 PHOSPHATE, 50MM NACL; 0.05MM U REMARK 210 -15N,13C, 20MM SODIUM REMARK 210 PHOSPHATE, 50MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : STANDARD SUITE FOR NMR REMARK 210 PROTEIN STRUCTURE DETERMINATION REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, X-PLOR X-PLOR- REMARK 210 NIH 2.9 4A, PROSA, CARA 0.9.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE X 2 N LYS X 4 2.00 REMARK 500 O PRO X 55 N GLU X 58 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ARG X 34 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 7 ARG X 34 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 7 ARG X 64 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 9 ARG X 34 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 9 ARG X 34 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 9 ARG X 64 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU X 3 46.50 -51.70 REMARK 500 1 LYS X 21 79.09 55.87 REMARK 500 1 ALA X 22 -79.10 -90.31 REMARK 500 1 SER X 36 -87.55 -49.78 REMARK 500 1 LEU X 37 -31.50 -35.40 REMARK 500 1 ASP X 54 82.75 -167.84 REMARK 500 1 GLU X 56 -61.88 -21.14 REMARK 500 1 ASN X 73 38.53 37.61 REMARK 500 1 ASP X 75 -164.52 -166.15 REMARK 500 1 GLU X 76 -94.66 -141.09 REMARK 500 2 LYS X 21 -169.41 -54.90 REMARK 500 2 ALA X 22 89.81 -61.28 REMARK 500 2 TRP X 24 -62.40 -27.31 REMARK 500 2 PRO X 25 -162.79 -64.47 REMARK 500 2 ALA X 27 -117.38 -168.01 REMARK 500 2 GLU X 28 -157.96 53.11 REMARK 500 2 SER X 36 -83.29 -49.53 REMARK 500 2 LEU X 37 -35.53 -33.05 REMARK 500 2 GLU X 56 -65.99 -26.45 REMARK 500 2 ASN X 73 29.99 36.50 REMARK 500 2 ASP X 75 -161.87 -171.86 REMARK 500 2 GLU X 76 -122.72 -139.20 REMARK 500 3 ALA X 22 27.17 -141.45 REMARK 500 3 TRP X 24 -62.88 -139.63 REMARK 500 3 SER X 36 -81.67 -42.99 REMARK 500 3 GLU X 56 -67.57 -27.33 REMARK 500 3 ASN X 73 23.64 41.94 REMARK 500 3 ASP X 75 -156.67 -175.03 REMARK 500 3 GLU X 76 -97.30 -140.31 REMARK 500 4 ALA X 22 54.17 -142.04 REMARK 500 4 ALA X 27 53.94 -172.30 REMARK 500 4 ALA X 32 -76.45 -46.16 REMARK 500 4 SER X 36 -81.21 -44.46 REMARK 500 4 ASP X 54 80.70 -170.77 REMARK 500 4 GLU X 56 -64.85 -29.88 REMARK 500 4 ASN X 73 31.44 38.13 REMARK 500 4 ASP X 75 95.06 165.43 REMARK 500 4 GLU X 76 -72.79 -62.34 REMARK 500 4 ASN X 77 -71.53 -42.82 REMARK 500 5 ILE X 2 -11.86 59.55 REMARK 500 5 ARG X 23 -72.26 -85.25 REMARK 500 5 GLU X 28 -171.47 -54.02 REMARK 500 5 ALA X 32 -75.22 -51.56 REMARK 500 5 SER X 36 -89.87 -46.46 REMARK 500 5 LEU X 37 -46.78 -27.46 REMARK 500 5 ASP X 54 80.50 -150.03 REMARK 500 5 GLU X 56 -63.25 -27.58 REMARK 500 5 ASN X 73 45.54 30.71 REMARK 500 5 ASP X 75 -162.56 -170.26 REMARK 500 5 GLU X 76 -94.35 -136.50 REMARK 500 6 LYS X 21 171.84 -50.61 REMARK 500 6 ALA X 22 -141.27 -59.58 REMARK 500 6 TRP X 26 105.60 -58.95 REMARK 500 6 ALA X 27 24.44 -159.87 REMARK 500 6 ILE X 31 -24.20 -173.87 REMARK 500 6 SER X 36 -78.85 -44.96 REMARK 500 6 ASP X 54 86.40 -168.52 REMARK 500 6 GLU X 56 -63.25 -24.53 REMARK 500 6 ASN X 73 35.18 37.45 REMARK 500 6 ASP X 75 -173.06 -172.23 REMARK 500 6 GLU X 76 -92.54 -140.39 REMARK 500 7 ILE X 2 3.44 52.94 REMARK 500 7 ALA X 22 43.95 -141.64 REMARK 500 7 ALA X 27 96.97 55.60 REMARK 500 7 LYS X 29 98.10 -172.63 REMARK 500 7 SER X 36 -84.52 -45.15 REMARK 500 7 ASP X 54 79.86 -154.03 REMARK 500 7 GLU X 56 -61.55 -27.06 REMARK 500 7 ASN X 73 45.12 31.33 REMARK 500 7 ASP X 75 -162.55 -160.79 REMARK 500 7 GLU X 76 -96.65 -141.15 REMARK 500 8 GLU X 3 44.02 -55.64 REMARK 500 8 ALA X 22 48.30 -140.79 REMARK 500 8 TRP X 26 86.58 54.96 REMARK 500 8 ALA X 27 26.58 -78.85 REMARK 500 8 GLU X 28 -179.74 51.81 REMARK 500 8 ILE X 31 -9.91 -150.91 REMARK 500 8 SER X 36 -80.11 -45.38 REMARK 500 8 GLU X 56 -65.03 -28.91 REMARK 500 8 ASN X 73 27.38 37.51 REMARK 500 8 ASP X 75 -158.99 -160.73 REMARK 500 8 GLU X 76 -99.54 -139.17 REMARK 500 9 ALA X 22 64.86 -64.26 REMARK 500 9 ARG X 23 81.59 -18.03 REMARK 500 9 PRO X 25 -75.09 -66.94 REMARK 500 9 GLU X 28 -26.91 -157.33 REMARK 500 9 SER X 36 -87.62 -50.36 REMARK 500 9 LEU X 37 -34.51 -29.89 REMARK 500 9 GLU X 56 -62.03 -24.64 REMARK 500 9 ASN X 73 45.40 26.02 REMARK 500 9 GLU X 76 -96.16 -140.59 REMARK 500 10 ILE X 2 86.46 46.83 REMARK 500 10 GLU X 28 -176.32 49.49 REMARK 500 10 ILE X 31 -33.76 -139.29 REMARK 500 10 SER X 36 -87.71 -46.05 REMARK 500 10 GLU X 56 -64.29 -26.95 REMARK 500 10 ASN X 73 26.02 41.57 REMARK 500 10 ASP X 75 -167.82 -167.13 REMARK 500 10 GLU X 76 -95.32 -140.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG X 9 0.09 SIDE_CHAIN REMARK 500 7 ARG X 57 0.09 SIDE_CHAIN REMARK 500 7 ARG X 66 0.11 SIDE_CHAIN REMARK 500 9 ARG X 9 0.11 SIDE_CHAIN REMARK 500 9 ARG X 57 0.10 SIDE_CHAIN REMARK 500 9 ARG X 66 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSA X 501 DBREF 2GTV X 1 101 UNP Q57696 Y246_METJA 1 93 SEQADV 2GTV LYS X 21 UNP Q57696 INSERTION SEQADV 2GTV ALA X 22 UNP Q57696 INSERTION SEQADV 2GTV ARG X 23 UNP Q57696 INSERTION SEQADV 2GTV TRP X 24 UNP Q57696 INSERTION SEQADV 2GTV PRO X 25 UNP Q57696 INSERTION SEQADV 2GTV TRP X 26 UNP Q57696 INSERTION SEQADV 2GTV ALA X 27 UNP Q57696 INSERTION SEQADV 2GTV GLU X 28 UNP Q57696 INSERTION SEQADV 2GTV ARG X 85 UNP Q57696 ILE 77 CONFLICT SEQADV 2GTV LEU X 102 UNP Q57696 EXPRESSION TAG SEQADV 2GTV GLU X 103 UNP Q57696 EXPRESSION TAG SEQADV 2GTV HIS X 104 UNP Q57696 EXPRESSION TAG SEQRES 1 X 104 MET ILE GLU LYS LEU ALA GLU ILE ARG LYS LYS ILE ASP SEQRES 2 X 104 GLU ILE ASP ASN LYS ILE LEU LYS ALA ARG TRP PRO TRP SEQRES 3 X 104 ALA GLU LYS LEU ILE ALA GLU ARG ASN SER LEU ALA LYS SEQRES 4 X 104 ASP VAL ALA GLU ILE LYS ASN GLN LEU GLY ILE PRO ILE SEQRES 5 X 104 ASN ASP PRO GLU ARG GLU LYS TYR ILE TYR ASP ARG ILE SEQRES 6 X 104 ARG LYS LEU CYS LYS GLU HIS ASN VAL ASP GLU ASN ILE SEQRES 7 X 104 GLY ILE LYS ILE PHE GLN ARG LEU ILE GLU HIS ASN LYS SEQRES 8 X 104 ALA LEU GLN LYS GLN TYR LEU GLU GLU THR LEU GLU HIS HET TSA X 501 26 HETNAM TSA 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5- HETNAM 2 TSA DICARBOXYLIC ACID FORMUL 2 TSA C10 H12 O6 HELIX 1 1 GLU X 3 LYS X 21 1 19 HELIX 2 2 LEU X 30 LEU X 48 1 19 HELIX 3 3 ASP X 54 ASN X 73 1 20 HELIX 4 4 GLU X 76 HIS X 104 1 29 SITE 1 AC1 10 ARG X 9 ARG X 34 VAL X 41 LYS X 45 SITE 2 AC1 10 ASP X 54 ARG X 57 GLU X 58 ILE X 87 SITE 3 AC1 10 ASN X 90 GLN X 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 228 0 1 4 0 0 3 6 0 0 0 8 END