HEADER TRANSPORT PROTEIN 20-APR-06 2GQE TITLE MOLECULAR CHARACTERIZATION OF THE RAN BINDING ZINC FINGER TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND ZINC FINGER, RESIDUES 722-750; COMPND 5 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUP153; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T VARIANT WITH TEV SOURCE 11 CLEAVAGE SITE KEYWDS ZINC FINGER, RAN, NUCLEAR PORE, ZINC KNUCKLE, NUCLEOPORIN, KEYWDS 2 PORE, TRANSPORT, NUP153, NUP358, RANBP2, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.M.HIGA,S.L.ALAM,W.I.SUNDQUIST,K.S.ULLMAN REVDAT 3 24-FEB-09 2GQE 1 VERSN REVDAT 2 12-JUN-07 2GQE 1 JRNL REVDAT 1 10-APR-07 2GQE 0 JRNL AUTH M.M.HIGA,S.L.ALAM,W.I.SUNDQUIST,K.S.ULLMAN JRNL TITL MOLECULAR CHARACTERIZATION OF THE RAN-BINDING ZINC JRNL TITL 2 FINGER DOMAIN OF NUP153. JRNL REF J.BIOL.CHEM. V. 282 17090 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17426026 JRNL DOI 10.1074/JBC.M702715200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USING CYANA AUTOMATED NOESY REMARK 3 ASSIGNMENTS REMARK 4 REMARK 4 2GQE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037426. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 70MM, 20MM TRIS, 50MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM HZNF2 U-15N, 13C, 20MM REMARK 210 D-TRIS, PH 7.0, 50MM NACL, 1MM REMARK 210 D-BME, 10 MICROMOLR ZNCL2, 90% REMARK 210 H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, HNHA, HNCO, HN(CO)CA, REMARK 210 HNCACB, CBCA(CO)NH, HNHB, REMARK 210 HN(CO)HB, LRCC, HSQC, HSQC- REMARK 210 TROSY, HCCH-TOCSY, (H)C(CO)NH- REMARK 210 TOCSY, H(CCO)NH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, FELIX, SPARKY REMARK 210 3.11.2, VNMR 2.3C REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION, LEAST REMARK 210 VIOLATIONS, FAVORABLE NON- REMARK 210 BONDED ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 4 -179.14 -51.60 REMARK 500 1 THR A 11 -36.73 -130.41 REMARK 500 1 LEU A 13 75.55 61.95 REMARK 500 1 ALA A 25 -43.77 -135.84 REMARK 500 2 CYS A 9 175.80 -58.74 REMARK 500 2 THR A 11 -54.65 -127.29 REMARK 500 2 LEU A 13 71.67 72.31 REMARK 500 2 ALA A 25 -45.63 -134.47 REMARK 500 2 GLU A 27 47.97 70.55 REMARK 500 3 HIS A 1 -175.82 -175.34 REMARK 500 3 THR A 11 -36.40 -130.73 REMARK 500 3 LEU A 13 76.09 61.56 REMARK 500 3 ALA A 25 -41.20 -135.46 REMARK 500 4 HIS A 1 49.41 -107.75 REMARK 500 4 THR A 6 148.41 -179.60 REMARK 500 4 THR A 11 -53.13 -120.56 REMARK 500 4 LEU A 13 82.54 62.04 REMARK 500 4 ALA A 25 -45.55 -133.51 REMARK 500 5 ILE A 4 52.19 -90.10 REMARK 500 5 THR A 6 138.71 -38.96 REMARK 500 5 LEU A 13 90.92 57.07 REMARK 500 5 VAL A 14 136.02 -171.62 REMARK 500 5 ALA A 25 -46.89 -131.23 REMARK 500 6 THR A 6 141.07 -36.33 REMARK 500 6 CYS A 9 172.91 -59.67 REMARK 500 6 THR A 11 -36.85 -131.74 REMARK 500 6 LEU A 13 76.95 60.90 REMARK 500 6 ALA A 25 -46.48 -136.64 REMARK 500 6 GLU A 27 36.84 70.08 REMARK 500 7 LEU A 13 90.48 62.91 REMARK 500 7 ALA A 25 -46.69 -132.02 REMARK 500 8 LEU A 13 85.56 57.81 REMARK 500 8 ALA A 25 -44.73 -132.51 REMARK 500 9 LEU A 13 92.52 54.70 REMARK 500 9 ALA A 25 -43.62 -130.93 REMARK 500 9 GLU A 27 46.67 70.59 REMARK 500 10 THR A 11 -55.78 -126.42 REMARK 500 10 LEU A 13 74.42 70.34 REMARK 500 10 ALA A 25 -45.53 -140.90 REMARK 500 10 GLU A 27 43.33 71.82 REMARK 500 11 LEU A 13 80.89 62.09 REMARK 500 11 ALA A 25 -45.62 -136.50 REMARK 500 12 MET A 2 171.42 -59.73 REMARK 500 12 ILE A 4 53.90 -94.44 REMARK 500 12 THR A 6 133.98 -36.59 REMARK 500 12 THR A 11 -59.67 -124.58 REMARK 500 12 LEU A 13 74.96 71.62 REMARK 500 12 ALA A 25 -45.36 -140.64 REMARK 500 12 GLU A 27 46.00 71.19 REMARK 500 13 THR A 6 148.46 -179.19 REMARK 500 13 LEU A 13 82.94 62.59 REMARK 500 13 ALA A 25 -45.60 -133.91 REMARK 500 13 GLU A 27 38.04 70.50 REMARK 500 14 VAL A 3 100.13 -37.47 REMARK 500 14 THR A 6 146.35 179.04 REMARK 500 14 LEU A 13 79.48 68.53 REMARK 500 14 ALA A 25 -46.04 -133.11 REMARK 500 15 THR A 11 -59.45 -128.14 REMARK 500 15 LEU A 13 75.23 69.32 REMARK 500 15 ALA A 25 -45.44 -140.73 REMARK 500 15 GLU A 27 45.21 71.77 REMARK 500 16 HIS A 1 110.02 -173.51 REMARK 500 16 LEU A 13 73.11 59.24 REMARK 500 16 ALA A 25 -47.37 -130.34 REMARK 500 16 GLU A 27 47.05 70.26 REMARK 500 17 MET A 2 117.52 -171.23 REMARK 500 17 THR A 6 129.17 -38.40 REMARK 500 17 LEU A 13 94.89 57.42 REMARK 500 17 VAL A 14 135.74 -173.61 REMARK 500 17 ALA A 25 -42.45 -136.24 REMARK 500 17 GLU A 27 40.62 73.74 REMARK 500 18 THR A 6 134.69 -39.62 REMARK 500 18 LEU A 13 78.99 62.42 REMARK 500 18 ALA A 25 -46.26 -136.38 REMARK 500 18 GLU A 27 36.55 72.67 REMARK 500 19 ILE A 4 71.16 -106.67 REMARK 500 19 THR A 6 147.97 -179.60 REMARK 500 19 THR A 11 -51.75 -120.09 REMARK 500 19 LEU A 13 81.27 60.25 REMARK 500 19 ALA A 25 -39.69 -136.58 REMARK 500 19 GLU A 27 36.79 71.06 REMARK 500 20 THR A 6 147.19 -39.90 REMARK 500 20 LEU A 13 89.90 41.41 REMARK 500 20 GLU A 27 45.60 74.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 32 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 9 SG 109.5 REMARK 620 3 CYS A 12 SG 109.5 109.4 REMARK 620 4 CYS A 26 SG 109.5 109.4 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 32 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NJ3 RELATED DB: PDB REMARK 900 STRUCTURE AND UBIQUITIN INTERACTIONS OF THE CONSERVED NZF REMARK 900 DOMAIN OF NPL4 REMARK 900 RELATED ID: 1Q5W RELATED DB: PDB REMARK 900 UBIQUITIN RECOGNITION BY NPL4 ZINC-FINGERS REMARK 900 RELATED ID: 5669 RELATED DB: BMRB REMARK 900 STRUCTURE AND UBIQUITIN INTERACTIONS OF THE CONSERVED NZF REMARK 900 DOMAIN OF NPL4 REMARK 900 RELATED ID: 7158 RELATED DB: BMRB DBREF 2GQE A 3 31 UNP P49790 NU153_HUMAN 722 750 SEQADV 2GQE GLY A 0 UNP P49790 CLONING ARTIFACT SEQADV 2GQE HIS A 1 UNP P49790 CLONING ARTIFACT SEQADV 2GQE MET A 2 UNP P49790 CLONING ARTIFACT SEQRES 1 A 32 GLY HIS MET VAL ILE GLY THR TRP ASP CYS ASP THR CYS SEQRES 2 A 32 LEU VAL GLN ASN LYS PRO GLU ALA ILE LYS CYS VAL ALA SEQRES 3 A 32 CYS GLU THR PRO LYS PRO HET ZN A 32 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SHEET 1 A 2 TRP A 7 ASP A 8 0 SHEET 2 A 2 GLN A 15 ASN A 16 -1 O ASN A 16 N TRP A 7 LINK ZN ZN A 32 SG CYS A 23 1555 1555 2.40 LINK ZN ZN A 32 SG CYS A 9 1555 1555 2.40 LINK ZN ZN A 32 SG CYS A 12 1555 1555 2.40 LINK ZN ZN A 32 SG CYS A 26 1555 1555 2.40 SITE 1 AC1 4 CYS A 9 CYS A 12 CYS A 23 CYS A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 188 0 1 0 2 0 1 6 0 0 0 3 END