HEADER RNA 20-APR-06 2GQ7 TITLE CRYSTAL STRUCTURE OF AN RNA RACEMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- COMPND 3 3'); COMPND 4 CHAIN: K, M; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- COMPND 8 3'); COMPND 9 CHAIN: L, N; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A 'SPIEGELMER' AND OCCURS IN 5S RNA SOURCE 4 FROM THERMUS FLAVUS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: THIS SEQUENCE IS A 'SPIEGELMER' AND OCCURS IN 5S RNA SOURCE 8 FROM THERMUS FLAVUS KEYWDS DOUBLE HELIX, RACEMATE, RNA EXPDTA X-RAY DIFFRACTION NUMMDL 2 AUTHOR W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL,V.A.ERDMANN REVDAT 5 28-JUL-21 2GQ7 1 REMARK LINK REVDAT 4 28-MAR-12 2GQ7 1 CRYST1 REVDAT 3 13-JUL-11 2GQ7 1 VERSN REVDAT 2 24-FEB-09 2GQ7 1 VERSN REVDAT 1 27-JUN-06 2GQ7 0 JRNL AUTH W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,L.J.DELUCAS, JRNL AUTH 2 C.BETZEL,V.A.ERDMANN JRNL TITL THE FIRST CRYSTAL STRUCTURE OF AN RNA RACEMATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 659 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16699193 JRNL DOI 10.1107/S090744490601359X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 20724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 414 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 675 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.014 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.208 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 4.698 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GQ7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.805 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NDB ENTRY AR0012 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 400, 0.1 M CACL2, 50 MM HEPES , REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K, REMARK 280 TEMPERATURE 298K, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P -1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY RELEVANT (ALTHOUGH NOT BIOLOGICAL) RNA REMARK 300 FRAGMENT IS THE DUPLEX FORMED BY CHAINS M+N, K+L AND X+Y REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 0C K 79 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 0G L 92 O5' 0G L 92 C5' -0.066 REMARK 500 1 0G M 81 N7 0G M 81 C8 0.038 REMARK 500 1 0G M 82 C2 0G M 82 N3 0.063 REMARK 500 1 0G M 83 C2 0G M 83 N3 0.051 REMARK 500 1 0G M 83 C5 0G M 83 N7 0.040 REMARK 500 1 0G M 85 N7 0G M 85 C8 0.039 REMARK 500 1 0G N 96 N7 0G N 96 C8 0.043 REMARK 500 2 0G M 81 N7 0G M 81 C8 0.038 REMARK 500 2 0G M 82 C2 0G M 82 N3 0.063 REMARK 500 2 0G M 83 C2 0G M 83 N3 0.051 REMARK 500 2 0G M 83 C5 0G M 83 N7 0.040 REMARK 500 2 0G M 85 N7 0G M 85 C8 0.039 REMARK 500 2 0G N 96 N7 0G N 96 C8 0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 0G K 82 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 0C K 84 C6 - N1 - C2 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 0U M 80 N1 - C2 - O2 ANGL. DEV. = -6.4 DEGREES REMARK 500 1 0U M 80 N3 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 0G M 82 C6 - N1 - C2 ANGL. DEV. = -5.3 DEGREES REMARK 500 1 0G M 82 C5 - C6 - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 0G M 82 C5 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 0C M 84 C3' - C2' - C1' ANGL. DEV. = -4.2 DEGREES REMARK 500 1 0G M 86 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 0G M 86 C5 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 0U N 95 N1 - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 1 0G N 96 C4 - C5 - N7 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 0G N 96 C5 - C6 - O6 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 0G N 97 C4' - C3' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 2 0G K 82 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 2 0G K 82 C1' - O4' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 2 0G K 82 C4' - C3' - C2' ANGL. DEV. = -7.8 DEGREES REMARK 500 2 0C L 91 C4' - C3' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 2 0G L 92 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 2 0U M 80 N1 - C2 - O2 ANGL. DEV. = -6.4 DEGREES REMARK 500 2 0U M 80 N3 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 0G M 82 C6 - N1 - C2 ANGL. DEV. = -5.3 DEGREES REMARK 500 2 0G M 82 C5 - C6 - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 0G M 82 C5 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 0C M 84 C3' - C2' - C1' ANGL. DEV. = -4.2 DEGREES REMARK 500 2 0G M 86 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 0G M 86 C5 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 2 0U N 95 N1 - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 2 0G N 96 C4 - C5 - N7 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 0G N 96 C5 - C6 - O6 ANGL. DEV. = -5.0 DEGREES REMARK 500 2 0G N 97 C4' - C3' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH K 16 O REMARK 620 2 HOH K 63 O 72.5 REMARK 620 3 HOH N 48 O 139.7 147.3 REMARK 620 4 HOH N 71 O 80.6 82.5 104.9 REMARK 620 5 HOH N 78 O 75.5 142.7 68.4 73.7 REMARK 620 6 HOH N 89 O 137.2 69.5 81.3 75.6 128.8 REMARK 620 7 0G N 97 O3' 72.9 111.3 81.7 143.9 76.2 140.1 REMARK 620 8 0G N 97 O2' 113.7 78.6 80.9 151.1 132.9 77.3 64.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G L 97 O3' REMARK 620 2 0G L 97 O2' 67.4 REMARK 620 3 HOH L 107 O 77.1 122.0 REMARK 620 4 HOH L 116 O 71.3 132.3 68.2 REMARK 620 5 HOH L 117 O 77.9 77.0 138.0 72.1 REMARK 620 6 HOH L 132 O 142.2 77.0 135.6 131.5 82.2 REMARK 620 7 HOH L 171 O 145.9 145.2 85.2 75.2 97.4 68.2 REMARK 620 8 HOH M 96 O 113.0 84.8 68.6 134.0 153.2 74.6 86.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA M 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 24 O REMARK 620 2 HOH M 39 O 72.2 REMARK 620 3 HOH M 44 O 72.6 130.1 REMARK 620 4 HOH M 55 O 144.8 142.1 75.3 REMARK 620 5 0G M 86 O3' 86.6 73.5 137.2 108.1 REMARK 620 6 0G M 86 O2' 79.4 131.4 73.5 77.9 66.1 REMARK 620 7 HOH M 98 O 94.1 77.2 71.3 89.0 149.0 144.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA M 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 31 O REMARK 620 2 HOH M 68 O 57.8 REMARK 620 3 0G M 82 N7 99.7 79.9 REMARK 620 4 HOH M 129 O 156.7 112.1 98.8 REMARK 620 5 HOH M 226 O 55.9 79.5 154.3 103.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 3 O REMARK 620 2 HOH N 6 O 83.6 REMARK 620 3 HOH N 11 O 76.6 82.0 REMARK 620 4 HOH N 27 O 71.8 154.0 99.9 REMARK 620 5 HOH N 42 O 77.2 91.5 153.6 75.2 REMARK 620 6 HOH N 79 O 154.9 82.3 80.9 123.7 123.7 REMARK 620 7 HOH N 108 O 135.6 131.2 127.3 67.7 75.6 68.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 3 O REMARK 620 2 HOH N 11 O 72.1 REMARK 620 3 HOH N 21 O 74.4 118.4 REMARK 620 4 HOH N 27 O 71.7 101.5 114.6 REMARK 620 5 0G N 96 OP1 128.6 155.6 83.0 77.4 REMARK 620 6 HOH N 100 O 158.0 92.5 127.5 97.2 63.8 REMARK 620 7 HOH N 125 O 121.4 86.7 69.4 166.5 90.7 71.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA M 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA L 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA M 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL N 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G32 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GPM RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GP4 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GQ5 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GQ6 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE DBREF 2GQ7 K 79 86 PDB 2GQ7 2GQ7 79 86 DBREF 2GQ7 L 90 97 PDB 2GQ7 2GQ7 90 97 DBREF 2GQ7 M 79 86 PDB 2GQ7 2GQ7 79 86 DBREF 2GQ7 N 90 97 PDB 2GQ7 2GQ7 90 97 SEQRES 1 K 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 L 8 0C 0C 0G 0C 0C 0U 0G 0G SEQRES 1 M 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 N 8 0C 0C 0G 0C 0C 0U 0G 0G HET 0C K 79 16 HET 0U K 80 20 HET 0G K 81 23 HET 0G K 82 23 HET 0G K 83 23 HET 0C K 84 20 HET 0G K 85 23 HET 0G K 86 23 HET 0C L 90 17 HET 0C L 91 20 HET 0G L 92 23 HET 0C L 93 20 HET 0C L 94 20 HET 0U L 95 20 HET 0G L 96 23 HET 0G L 97 23 HET 0C M 79 17 HET 0U M 80 20 HET 0G M 81 23 HET 0G M 82 23 HET 0G M 83 23 HET 0C M 84 20 HET 0G M 85 23 HET 0G M 86 23 HET 0C N 90 17 HET 0C N 91 20 HET 0G N 92 23 HET 0C N 93 20 HET 0C N 94 20 HET 0U N 95 20 HET 0G N 96 23 HET 0G N 97 23 HET CA L 310 1 HET CA M 308 1 HET CA M 311 1 HET CA N 302 1 HET CA N 304 1 HET CA N 306 1 HET GOL N 301 6 HETNAM 0C L-CYTIDINE-5'-MONOPHOSPHATE HETNAM 0U L-URIDINE-5'-MONOPHOSPHATE HETNAM 0G L-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 0C 12(C9 H14 N3 O8 P) FORMUL 1 0U 4(C9 H13 N2 O9 P) FORMUL 1 0G 16(C10 H14 N5 O8 P) FORMUL 5 CA 6(CA 2+) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *247(H2 O) LINK O3'A 0C K 79 P A 0U K 80 1555 1555 1.60 LINK O3'A 0U K 80 P A 0G K 81 1555 1555 1.60 LINK O3'A 0G K 81 P A 0G K 82 1555 1555 1.60 LINK O3'A 0G K 82 P A 0G K 83 1555 1555 1.63 LINK O3'A 0G K 83 P A 0C K 84 1555 1555 1.60 LINK O3'A 0C K 84 P A 0G K 85 1555 1555 1.59 LINK O3'A 0G K 85 P A 0G K 86 1555 1555 1.60 LINK O3'A 0C L 90 P A 0C L 91 1555 1555 1.60 LINK O3'A 0C L 91 P A 0G L 92 1555 1555 1.60 LINK O3'A 0G L 92 P A 0C L 93 1555 1555 1.60 LINK O3'A 0C L 93 P A 0C L 94 1555 1555 1.59 LINK O3'A 0C L 94 P A 0U L 95 1555 1555 1.59 LINK O3'A 0U L 95 P A 0G L 96 1555 1555 1.61 LINK O3'A 0G L 96 P A 0G L 97 1555 1555 1.61 LINK O3'A 0C M 79 P A 0U M 80 1555 1555 1.58 LINK O3'A 0U M 80 P A 0G M 81 1555 1555 1.61 LINK O3'A 0G M 81 P A 0G M 82 1555 1555 1.60 LINK O3'A 0G M 82 P A 0G M 83 1555 1555 1.59 LINK O3'A 0G M 83 P A 0C M 84 1555 1555 1.57 LINK O3'A 0C M 84 P A 0G M 85 1555 1555 1.58 LINK O3'A 0G M 85 P A 0G M 86 1555 1555 1.58 LINK O3'A 0C N 90 P A 0C N 91 1555 1555 1.60 LINK O3'A 0C N 91 P A 0G N 92 1555 1555 1.57 LINK O3'A 0G N 92 P A 0C N 93 1555 1555 1.61 LINK O3'A 0C N 93 P A 0C N 94 1555 1555 1.60 LINK O3'A 0C N 94 P A 0U N 95 1555 1555 1.54 LINK O3'A 0U N 95 P A 0G N 96 1555 1555 1.56 LINK O3'A 0G N 96 P A 0G N 97 1555 1555 1.59 LINK O AHOH K 16 CA A CA N 306 1555 1555 2.48 LINK O AHOH K 63 CA A CA N 306 1555 1555 2.19 LINK O3'A 0G L 97 CA A CA L 310 1555 1555 2.45 LINK O2'A 0G L 97 CA A CA L 310 1555 1555 2.38 LINK O AHOH L 107 CA A CA L 310 1555 1555 2.47 LINK O AHOH L 116 CA A CA L 310 1555 1555 2.55 LINK O AHOH L 117 CA A CA L 310 1555 1555 2.26 LINK O AHOH L 132 CA A CA L 310 1555 1555 2.46 LINK O AHOH L 171 CA A CA L 310 1555 1555 2.39 LINK CA A CA L 310 O AHOH M 96 1555 1555 2.09 LINK O AHOH M 24 CA A CA M 308 1555 1555 2.47 LINK O AHOH M 31 CA A CA M 311 1555 1555 2.39 LINK O AHOH M 39 CA A CA M 308 1555 1555 2.47 LINK O AHOH M 44 CA A CA M 308 1555 1555 2.45 LINK O AHOH M 55 CA A CA M 308 1555 1555 2.34 LINK O AHOH M 68 CA A CA M 311 1555 1555 2.79 LINK N7 A 0G M 82 CA A CA M 311 1555 1555 2.60 LINK O3'A 0G M 86 CA A CA M 308 1555 1555 2.41 LINK O2'A 0G M 86 CA A CA M 308 1555 1555 2.50 LINK O AHOH M 98 CA A CA M 308 1555 1555 2.37 LINK O AHOH M 129 CA A CA M 311 1555 1555 2.50 LINK O AHOH M 226 CA A CA M 311 1555 1555 2.45 LINK O AHOH N 3 CA A CA N 302 1555 1555 2.38 LINK O AHOH N 3 CA A CA N 304 1555 1555 2.56 LINK O AHOH N 6 CA A CA N 302 1555 1555 2.36 LINK O AHOH N 11 CA A CA N 302 1555 1555 2.39 LINK O AHOH N 11 CA A CA N 304 1555 1555 2.47 LINK O AHOH N 21 CA A CA N 304 1555 1555 2.00 LINK O AHOH N 27 CA A CA N 302 1555 1555 2.80 LINK O AHOH N 27 CA A CA N 304 1555 1555 2.66 LINK O AHOH N 42 CA A CA N 302 1555 1555 2.27 LINK O AHOH N 48 CA A CA N 306 1555 1555 2.48 LINK O AHOH N 71 CA A CA N 306 1555 1555 2.34 LINK O AHOH N 78 CA A CA N 306 1555 1555 2.45 LINK O AHOH N 79 CA A CA N 302 1555 1555 2.39 LINK O AHOH N 89 CA A CA N 306 1555 1555 2.45 LINK OP1A 0G N 96 CA A CA N 304 1555 1555 2.42 LINK O3'A 0G N 97 CA A CA N 306 1555 1555 2.47 LINK O2'A 0G N 97 CA A CA N 306 1555 1555 2.50 LINK O AHOH N 100 CA A CA N 304 1555 1555 2.85 LINK O AHOH N 108 CA A CA N 302 1555 1555 2.19 LINK O AHOH N 125 CA A CA N 304 1555 1555 3.10 SITE 1 AC1 8 HOH N 3 HOH N 6 HOH N 11 HOH N 27 SITE 2 AC1 8 HOH N 42 HOH N 79 HOH N 108 CA N 304 SITE 1 AC2 8 HOH N 3 HOH N 11 HOH N 21 HOH N 27 SITE 2 AC2 8 0G N 96 HOH N 100 HOH N 125 CA N 302 SITE 1 AC3 7 HOH K 16 HOH K 63 HOH N 48 HOH N 71 SITE 2 AC3 7 HOH N 78 HOH N 89 0G N 97 SITE 1 AC4 7 HOH L 64 HOH M 24 HOH M 39 HOH M 44 SITE 2 AC4 7 HOH M 55 0G M 86 HOH M 98 SITE 1 AC5 7 0G L 97 HOH L 107 HOH L 116 HOH L 117 SITE 2 AC5 7 HOH L 132 HOH L 171 HOH M 96 SITE 1 AC6 5 HOH M 31 HOH M 68 0G M 82 HOH M 129 SITE 2 AC6 5 HOH M 226 SITE 1 AC7 6 0G K 85 0G K 86 HOH K 245 0C L 91 SITE 2 AC7 6 0G N 92 0C N 93 CRYST1 26.665 37.917 45.419 112.58 100.94 93.29 P -1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037502 0.002156 0.008869 0.00000 SCALE2 0.000000 0.026417 0.011627 0.00000 SCALE3 0.000000 0.000000 0.024501 0.00000 ENDMDL ENDMDL MASTER 439 0 39 0 0 0 14 6 0 0 0 4 END