HEADER RNA 18-APR-06 2GPM TITLE CRYSTAL STRUCTURE OF AN RNA RACEMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- COMPND 3 3'); COMPND 4 CHAIN: K, M; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- COMPND 8 3'); COMPND 9 CHAIN: L, N; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A 'SPIEGELMER' AND OCCURS IN 5S RNA SOURCE 4 FROM THERMUS FLAVUS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: THIS SEQUENCE IS A 'SPIEGELMER' AND OCCURS IN 5S RNA SOURCE 8 FROM THERMUS FLAVUS KEYWDS DOUBLE HELIX, RACEMATE, RNA EXPDTA X-RAY DIFFRACTION NUMMDL 2 AUTHOR W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL,V.A.ERDMANN REVDAT 6 28-MAR-12 2GPM 1 CRYST1 REVDAT 5 27-JUL-11 2GPM 1 HETATM REMARK REVDAT SEQRES REVDAT 5 2 1 AUTHOR REVDAT 4 13-JUL-11 2GPM 1 VERSN REVDAT 3 28-APR-09 2GPM 1 REMARK REVDAT 2 24-FEB-09 2GPM 1 VERSN REVDAT 1 27-JUN-06 2GPM 0 JRNL AUTH W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,L.J.DELUCAS, JRNL AUTH 2 C.BETZEL,V.A.ERDMANN JRNL TITL THE FIRST CRYSTAL STRUCTURE OF AN RNA RACEMATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 659 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16699193 JRNL DOI 10.1107/S090744490601359X REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 29605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 676 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.014 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.055 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 4.671 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GPM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80190 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NDB ENTRY AR0012 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 400, 0.1 M CACL2, 50MM HEPES, REMARK 280 PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P -1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALY RELEVANT (ALTHOUGH NOT BIOLOGICAL) RNA REMARK 300 FRAGMENT IS THE DUPLEX FORMED BY CHAINS M+N, K+L AND X+Y REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 0G L 92 O5' 0G L 92 C5' -0.072 REMARK 500 1 0G M 82 N7 0G M 82 C8 0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 0C K 84 O5' - P - OP1 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 0C K 84 O5' - C5' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 1 0C K 84 O4' - C4' - C3' ANGL. DEV. = -7.1 DEGREES REMARK 500 1 0G L 92 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 1 0C L 94 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 0U M 80 C6 - N1 - C2 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 0U M 80 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 0U M 80 N1 - C2 - O2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 0C M 84 N3 - C4 - C5 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 0C M 84 C4 - C5 - C6 ANGL. DEV. = -4.0 DEGREES REMARK 500 1 0C M 84 C5 - C4 - N4 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 0G M 85 N1 - C2 - N3 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 0U N 95 C4' - C3' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 1 0G N 96 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 0G N 96 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 0G N 96 N9 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 1 0C K 79 31.5 D L WRONG HAND REMARK 500 1 0U K 80 36.7 D L WRONG HAND REMARK 500 1 0G K 81 37.8 D L WRONG HAND REMARK 500 1 0G K 82 39.7 D L WRONG HAND REMARK 500 1 0G K 83 38.4 D L WRONG HAND REMARK 500 1 0C K 84 37.5 D L WRONG HAND REMARK 500 1 0G K 85 32.7 D L WRONG HAND REMARK 500 1 0G K 86 41.1 D L WRONG HAND REMARK 500 1 0C L 90 28.7 D L WRONG HAND REMARK 500 1 0C L 91 36.4 D L WRONG HAND REMARK 500 1 0G L 92 32.3 D L WRONG HAND REMARK 500 1 0C L 93 35.9 D L WRONG HAND REMARK 500 1 0C L 94 35.8 D L WRONG HAND REMARK 500 1 0U L 95 37.6 D L WRONG HAND REMARK 500 1 0G L 96 37.9 D L WRONG HAND REMARK 500 1 0G L 97 37.9 D L WRONG HAND REMARK 500 1 0C M 79 31.1 D L WRONG HAND REMARK 500 1 0U M 80 35.0 D L WRONG HAND REMARK 500 1 0G M 81 37.8 D L WRONG HAND REMARK 500 1 0G M 82 38.3 D L WRONG HAND REMARK 500 1 0G M 83 34.3 D L WRONG HAND REMARK 500 1 0C M 84 36.9 D L WRONG HAND REMARK 500 1 0G M 85 33.7 D L WRONG HAND REMARK 500 1 0G M 86 36.3 D L WRONG HAND REMARK 500 1 0C N 90 32.1 D L WRONG HAND REMARK 500 1 0C N 91 37.8 D L WRONG HAND REMARK 500 1 0G N 92 35.9 D L WRONG HAND REMARK 500 1 0C N 93 36.9 D L WRONG HAND REMARK 500 1 0C N 94 35.9 D L WRONG HAND REMARK 500 1 0U N 95 41.2 D L WRONG HAND REMARK 500 1 0G N 96 37.1 D L WRONG HAND REMARK 500 1 0G N 97 38.5 D L WRONG HAND REMARK 500 2 0C K 79 34.9 D L WRONG HAND REMARK 500 2 0U K 80 38.8 D L WRONG HAND REMARK 500 2 0G K 81 37.0 D L WRONG HAND REMARK 500 2 0G K 82 35.2 D L WRONG HAND REMARK 500 2 0G K 83 32.9 D L WRONG HAND REMARK 500 2 0C K 84 38.8 D L WRONG HAND REMARK 500 2 0G K 85 34.8 D L WRONG HAND REMARK 500 2 0G K 86 35.7 D L WRONG HAND REMARK 500 2 0C L 90 32.1 D L WRONG HAND REMARK 500 2 0C L 91 35.7 D L WRONG HAND REMARK 500 2 0G L 92 35.1 D L WRONG HAND REMARK 500 2 0C L 93 36.1 D L WRONG HAND REMARK 500 2 0C L 94 36.7 D L WRONG HAND REMARK 500 2 0U L 95 36.1 D L WRONG HAND REMARK 500 2 0G L 96 36.8 D L WRONG HAND REMARK 500 2 0G L 97 38.1 D L WRONG HAND REMARK 500 2 0C M 79 31.1 D L WRONG HAND REMARK 500 2 0U M 80 35.0 D L WRONG HAND REMARK 500 REMARK 500 THIS ENTRY HAS 64 CHIRALITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA N 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 334 O REMARK 620 2 HOH N 347 O 67.3 REMARK 620 3 HOH N 322 O 82.5 116.4 REMARK 620 4 HOH N 319 O 66.4 128.1 79.0 REMARK 620 5 HOH N 307 O 132.7 79.5 83.4 151.8 REMARK 620 6 HOH N 310 O 139.6 151.4 82.7 74.0 82.2 REMARK 620 7 HOH N 327 O 116.3 77.1 160.7 104.0 86.0 79.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA N 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 319 O REMARK 620 2 HOH N 310 O 78.8 REMARK 620 3 HOH N 327 O 99.3 72.1 REMARK 620 4 HOH N 350 O 92.5 151.3 82.6 REMARK 620 5 HOH N 324 O 114.2 75.3 126.8 132.4 REMARK 620 6 HOH N 345 O 167.4 105.5 71.5 78.1 78.3 REMARK 620 7 0G N 96 OP1 81.4 137.3 149.0 66.4 79.0 102.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA N 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 328 O REMARK 620 2 HOH K 95 O 77.6 REMARK 620 3 HOH N 321 O 72.1 143.7 REMARK 620 4 HOH N 331 O 75.0 84.3 106.1 REMARK 620 5 HOH N 318 O 143.1 71.1 143.6 82.8 REMARK 620 6 HOH N 323 O 126.8 139.2 76.5 73.9 72.1 REMARK 620 7 0G N 97 O3' 135.9 108.5 81.4 147.7 74.2 77.5 REMARK 620 8 0G N 97 O2' 75.2 76.1 77.2 147.2 114.4 136.6 64.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA M 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 345 O REMARK 620 2 HOH M 319 O 100.5 REMARK 620 3 HOH M 326 O 75.8 72.3 REMARK 620 4 HOH M 330 O 78.6 77.4 135.5 REMARK 620 5 HOH M 327 O 89.9 146.2 141.5 73.2 REMARK 620 6 0G M 86 O3' 144.3 85.2 72.5 136.6 104.9 REMARK 620 7 0G M 86 O2' 150.8 79.4 130.2 72.9 76.2 64.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA L 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 336 O REMARK 620 2 HOH L 362 O 78.7 REMARK 620 3 HOH L 355 O 75.9 129.2 REMARK 620 4 HOH M 342 O 148.7 132.4 79.6 REMARK 620 5 HOH M 336 O 139.3 63.8 140.5 71.0 REMARK 620 6 0G L 97 O3' 79.5 79.3 136.1 106.2 78.7 REMARK 620 7 0G L 97 O2' 76.7 135.8 78.6 79.7 119.7 60.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA M 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 364 O REMARK 620 2 HOH M 337 O 64.4 REMARK 620 3 HOH M 321 O 55.1 55.8 REMARK 620 4 HOH M 328 O 95.8 110.1 150.5 REMARK 620 5 0G M 82 N7 141.6 77.6 99.3 102.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA L 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA M 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA M 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G32 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GQ4 RELATED DB: PDB REMARK 900 RELATED ID: 2GQ5 RELATED DB: PDB REMARK 900 RELATED ID: 2GQ6 RELATED DB: PDB REMARK 900 RELATED ID: 2GQ7 RELATED DB: PDB DBREF 2GPM K 79 86 PDB 2GPM 2GPM 79 86 DBREF 2GPM L 90 97 PDB 2GPM 2GPM 90 97 DBREF 2GPM M 79 86 PDB 2GPM 2GPM 79 86 DBREF 2GPM N 90 97 PDB 2GPM 2GPM 90 97 SEQRES 1 K 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 L 8 0C 0C 0G 0C 0C 0U 0G 0G SEQRES 1 M 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 N 8 0C 0C 0G 0C 0C 0U 0G 0G HET 0C K 79 17 HET 0U K 80 20 HET 0G K 81 23 HET 0G K 82 23 HET 0G K 83 23 HET 0C K 84 20 HET 0G K 85 23 HET 0G K 86 23 HET 0C L 90 17 HET 0C L 91 20 HET 0G L 92 23 HET 0C L 93 20 HET 0C L 94 20 HET 0U L 95 20 HET 0G L 96 23 HET 0G L 97 23 HET 0C M 79 17 HET 0U M 80 20 HET 0G M 81 23 HET 0G M 82 23 HET 0G M 83 23 HET 0C M 84 20 HET 0G M 85 23 HET 0G M 86 23 HET 0C N 90 17 HET 0C N 91 20 HET 0G N 92 23 HET 0C N 93 20 HET 0C N 94 20 HET 0U N 95 20 HET 0G N 96 23 HET 0G N 97 23 HET CA L 310 1 HET CA M 308 1 HET CA M 311 1 HET CA N 302 1 HET CA N 304 1 HET CA N 306 1 HETNAM 0C L-CYTIDINE-5'-MONOPHOSPHATE HETNAM 0U L-URIDINE-5'-MONOPHOSPHATE HETNAM 0G L-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION FORMUL 1 0C 12(C9 H14 N3 O8 P) FORMUL 1 0U 4(C9 H13 N2 O9 P) FORMUL 1 0G 16(C10 H14 N5 O8 P) FORMUL 5 CA 6(CA 2+) FORMUL 11 HOH *281(H2 O) LINK CA A CA N 302 O AHOH N 334 1555 1555 2.08 LINK CA A CA N 302 O AHOH N 347 1555 1555 2.44 LINK CA A CA N 302 O AHOH N 322 1555 1555 2.37 LINK CA A CA N 302 O AHOH N 319 1555 1555 2.80 LINK CA A CA N 302 O AHOH N 307 1555 1555 2.43 LINK CA A CA N 302 O AHOH N 310 1555 1555 2.33 LINK CA A CA N 302 O AHOH N 327 1555 1555 2.01 LINK CA A CA N 304 O AHOH N 319 1555 1555 2.57 LINK CA A CA N 304 O AHOH N 310 1555 1555 2.31 LINK CA A CA N 304 O AHOH N 327 1555 1555 2.44 LINK CA A CA N 304 O AHOH N 350 1555 1555 2.56 LINK CA A CA N 304 O AHOH N 324 1555 1555 2.15 LINK CA A CA N 304 O AHOH N 345 1555 1555 2.36 LINK CA A CA N 306 O AHOH N 328 1555 1555 2.46 LINK CA A CA N 306 O AHOH K 95 1555 1555 2.32 LINK CA A CA N 306 O AHOH N 321 1555 1555 2.46 LINK CA A CA N 306 O AHOH N 331 1555 1555 2.44 LINK CA A CA N 306 O AHOH N 318 1555 1555 2.45 LINK CA A CA N 306 O AHOH N 323 1555 1555 2.38 LINK CA A CA M 308 O AHOH M 345 1555 1555 2.35 LINK CA A CA M 308 O AHOH M 319 1555 1555 2.46 LINK CA A CA M 308 O AHOH M 326 1555 1555 2.46 LINK CA A CA M 308 O AHOH M 330 1555 1555 2.42 LINK CA A CA M 308 O AHOH M 327 1555 1555 2.25 LINK CA A CA L 310 O AHOH L 336 1555 1555 2.43 LINK CA A CA L 310 O AHOH L 362 1555 1555 2.35 LINK CA A CA L 310 O AHOH L 355 1555 1555 2.25 LINK CA A CA L 310 O AHOH M 342 1555 1555 2.26 LINK CA A CA L 310 O AHOH M 336 1555 1555 2.41 LINK CA A CA M 311 O AHOH M 364 1555 1555 2.30 LINK CA A CA M 311 O AHOH M 337 1555 1555 2.83 LINK CA A CA M 311 O AHOH M 321 1555 1555 2.50 LINK CA A CA M 311 O AHOH M 328 1555 1555 2.68 LINK O3'A 0C K 79 P A 0U K 80 1555 1555 1.60 LINK O3'A 0U K 80 P A 0G K 81 1555 1555 1.60 LINK O3'A 0G K 81 P A 0G K 82 1555 1555 1.61 LINK O3'A 0G K 82 P A 0G K 83 1555 1555 1.61 LINK O3'A 0G K 83 P A 0C K 84 1555 1555 1.59 LINK O3'A 0C K 84 P A 0G K 85 1555 1555 1.57 LINK O3'A 0G K 85 P A 0G K 86 1555 1555 1.57 LINK O3'A 0C L 90 P A 0C L 91 1555 1555 1.60 LINK O3'A 0C L 91 P A 0G L 92 1555 1555 1.59 LINK O3'A 0G L 92 P A 0C L 93 1555 1555 1.60 LINK O3'A 0C L 93 P A 0C L 94 1555 1555 1.59 LINK O3'A 0C L 94 P A 0U L 95 1555 1555 1.59 LINK O3'A 0U L 95 P A 0G L 96 1555 1555 1.60 LINK O3'A 0G L 96 P A 0G L 97 1555 1555 1.59 LINK O3'A 0C M 79 P A 0U M 80 1555 1555 1.59 LINK O3'A 0U M 80 P A 0G M 81 1555 1555 1.61 LINK O3'A 0G M 81 P A 0G M 82 1555 1555 1.57 LINK O3'A 0G M 82 P A 0G M 83 1555 1555 1.58 LINK O3'A 0G M 83 P A 0C M 84 1555 1555 1.56 LINK O3'A 0C M 84 P A 0G M 85 1555 1555 1.58 LINK O3'A 0G M 85 P A 0G M 86 1555 1555 1.59 LINK O3'A 0C N 90 P A 0C N 91 1555 1555 1.60 LINK O3'A 0C N 91 P A 0G N 92 1555 1555 1.57 LINK O3'A 0G N 92 P A 0C N 93 1555 1555 1.57 LINK O3'A 0C N 93 P A 0C N 94 1555 1555 1.61 LINK O3'A 0C N 94 P A 0U N 95 1555 1555 1.54 LINK O3'A 0U N 95 P A 0G N 96 1555 1555 1.54 LINK O3'A 0G N 96 P A 0G N 97 1555 1555 1.55 LINK O3'A 0G L 97 CA A CA L 310 1555 1555 2.65 LINK O2'A 0G L 97 CA A CA L 310 1555 1555 2.65 LINK N7 A 0G M 82 CA A CA M 311 1555 1555 2.72 LINK O3'A 0G M 86 CA A CA M 308 1555 1555 2.41 LINK O2'A 0G M 86 CA A CA M 308 1555 1555 2.48 LINK OP1A 0G N 96 CA A CA N 304 1555 1555 2.41 LINK O3'A 0G N 97 CA A CA N 306 1555 1555 2.42 LINK O2'A 0G N 97 CA A CA N 306 1555 1555 2.49 SITE 1 AC1 6 0G L 97 HOH L 336 HOH L 355 HOH L 362 SITE 2 AC1 6 HOH M 336 HOH M 342 SITE 1 AC2 7 HOH L 323 0G M 86 HOH M 319 HOH M 326 SITE 2 AC2 7 HOH M 327 HOH M 330 HOH M 345 SITE 1 AC3 5 0G M 82 HOH M 321 HOH M 328 HOH M 337 SITE 2 AC3 5 HOH M 364 SITE 1 AC4 8 CA N 304 HOH N 307 HOH N 310 HOH N 319 SITE 2 AC4 8 HOH N 322 HOH N 327 HOH N 334 HOH N 347 SITE 1 AC5 8 0G N 96 CA N 302 HOH N 310 HOH N 319 SITE 2 AC5 8 HOH N 324 HOH N 327 HOH N 345 HOH N 350 SITE 1 AC6 7 HOH K 95 0G N 97 HOH N 318 HOH N 321 SITE 2 AC6 7 HOH N 323 HOH N 328 HOH N 331 CRYST1 26.338 38.076 45.401 113.75 99.71 93.92 P -1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037968 0.002602 0.008372 0.00000 SCALE2 0.000000 0.026325 0.012228 0.00000 SCALE3 0.000000 0.000000 0.024639 0.00000 ENDMDL ENDMDL MASTER 459 0 38 0 0 0 12 6 0 0 0 4 END