HEADER VIRAL PROTEIN 12-APR-06 2GOF TITLE THREE-DIMENSIONAL STRUCTURE OF THE TRANS-MEMBRANE DOMAIN OF VPU FROM TITLE 2 HIV-1 IN ALIGNED PHOSPHOLIPID BICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPU PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANS-MEMBRANE DOMAIN, RESIDUES 2-30; COMPND 5 SYNONYM: U ORF PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: VPU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET31-B(+) KEYWDS SINGLE TRANS-MEMBRANE HELIX, BICELLE, MAGNETIC ALIGNMENT, VIRAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR S.H.PARK,A.A.DE ANGELIS,A.A.NEVZOROV,C.H.WU,S.J.OPELLA REVDAT 4 20-OCT-21 2GOF 1 REMARK SEQADV REVDAT 3 24-FEB-09 2GOF 1 VERSN REVDAT 2 10-OCT-06 2GOF 1 JRNL REVDAT 1 08-AUG-06 2GOF 0 JRNL AUTH S.H.PARK,A.A.DE ANGELIS,A.A.NEVZOROV,C.H.WU,S.J.OPELLA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF JRNL TITL 2 VPU FROM HIV-1 IN ALIGNED PHOSPHOLIPID BICELLES. JRNL REF BIOPHYS.J. V. 91 3032 2006 JRNL REFN ISSN 0006-3495 JRNL PMID 16861273 JRNL DOI 10.1529/BIOPHYSJ.106.087106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : STRUCTURAL FITTING REMARK 3 AUTHORS : NEVZOROV, A.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ORIENTATIONAL FREQUENICES (15N CHEMICAL REMARK 3 SHIFT AND 15N-1H DIPOLAR COUPLING) FOR EACH AMIDE SITE WERE USED. REMARK 4 REMARK 4 2GOF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037361. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 15N-UNIFORMLY OR SELECTIVELY REMARK 210 PEPTIDE ALIGNED IN 16C BICELLES (1,2-DI-O-TETRADECYL-SN-GLYCERO- REMARK 210 3-PHOSPHOCHOLINE (14-O-PC) / 1,2-DI-O-HEXYL-SN-GLYCERO-3- REMARK 210 PHOSPHOCHOLINE (6-O-PC) = 3.0, 28% W/V), 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PISEMA REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : STRUCTURAL FITTING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : FIRST 20 STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 GLN A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 26 REMARK 465 ILE A 27 REMARK 465 GLU A 28 REMARK 465 GLY A 29 REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 LYS A 33 REMARK 465 LYS A 34 REMARK 465 LYS A 35 REMARK 465 LYS A 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 12 H ILE A 16 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GOH RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF THE TRANS-MEMBRANE DOMAIN OF VPU REMARK 900 FROM HIV-1 IN ALIGNED PHOSPHOLIPID BICELLES DBREF 2GOF A 2 30 UNP Q70625 VPU_HV1LW 2 30 SEQADV 2GOF GLY A 29 UNP Q70625 TYR 29 ENGINEERED MUTATION SEQADV 2GOF GLY A 31 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF GLY A 32 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 33 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 34 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 35 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 36 UNP Q70625 CLONING ARTIFACT SEQRES 1 A 35 GLN PRO ILE GLN ILE ALA ILE VAL ALA LEU VAL VAL ALA SEQRES 2 A 35 ILE ILE ILE ALA ILE VAL VAL TRP SER ILE VAL ILE ILE SEQRES 3 A 35 GLU GLY ARG GLY GLY LYS LYS LYS LYS HELIX 1 1 ALA A 7 VAL A 25 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 105 0 0 1 0 0 0 6 0 0 0 3 END