HEADER TRANSLATION/RNA 30-MAR-06 2GJE TITLE STRUCTURE OF A GUIDERNA-BINDING PROTEIN COMPLEX BOUND TO A GRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUIDE RNA 40-MER; COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA TETRAMER; COMPND 7 CHAIN: S; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MITOCHONDRIAL RNA-BINDING PROTEIN 2; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: MRP2, GUIDE RNA-BINDING PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: MITOCHONDRIAL RNA-BINDING PROTEIN 1; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: MRP1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 7 ORGANISM_TAXID: 185431; SOURCE 8 STRAIN: TREU927; SOURCE 9 GENE: MRP1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID, COEXPRESSION; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 17 ORGANISM_TAXID: 185431; SOURCE 18 STRAIN: TREU927; SOURCE 19 GENE: MRP2; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID, COEXPRESSION; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS GUIDE RNA; KRNA EDITING; RNA BINDING PROTEIN, TRANSLATION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,E.KARAMOOZ,A.ZIKOVA,L.TRANTIREK,J.LUKES REVDAT 3 13-JUL-11 2GJE 1 VERSN REVDAT 2 24-FEB-09 2GJE 1 VERSN REVDAT 1 05-SEP-06 2GJE 0 JRNL AUTH M.A.SCHUMACHER,E.KARAMOOZ,A.ZIKOVA,L.TRANTIREK,J.LUKES JRNL TITL CRYSTAL STRUCTURES OF T. BRUCEI MRP1/MRP2 GUIDE-RNA BINDING JRNL TITL 2 COMPLEX REVEAL RNA MATCHMAKING MECHANISM. JRNL REF CELL(CAMBRIDGE,MASS.) V. 126 701 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16923390 JRNL DOI 10.1016/J.CELL.2006.06.047 REMARK 2 REMARK 2 RESOLUTION. 3.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 6089525.040 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 8111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 913 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 58 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2391 REMARK 3 NUCLEIC ACID ATOMS : 377 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.71000 REMARK 3 B22 (A**2) : 11.71000 REMARK 3 B33 (A**2) : -23.41000 REMARK 3 B12 (A**2) : 3.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.59 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.48 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 53.76 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8126 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.370 REMARK 200 RESOLUTION RANGE LOW (A) : 81.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, ISOPROPANOL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.65000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.55000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.20000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.75000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.65000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MRP1/MRP2 FORM A HETEROTETRAMER WITH PSEUDO C4 SYMMETRY ++ REMARK 300 RNA SINGLE STRAND REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, S, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A R 1 REMARK 465 A R 2 REMARK 465 A R 3 REMARK 465 U R 4 REMARK 465 A R 5 REMARK 465 C R 6 REMARK 465 G R 7 REMARK 465 A R 8 REMARK 465 U R 9 REMARK 465 G R 10 REMARK 465 G R 24 REMARK 465 U R 25 REMARK 465 A R 26 REMARK 465 U R 27 REMARK 465 A R 28 REMARK 465 G R 29 REMARK 465 U R 30 REMARK 465 U R 31 REMARK 465 A R 32 REMARK 465 G R 33 REMARK 465 U R 34 REMARK 465 G R 35 REMARK 465 U R 36 REMARK 465 A R 37 REMARK 465 U R 38 REMARK 465 A R 39 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 ALA A 37 REMARK 465 ASP A 38 REMARK 465 GLY A 39 REMARK 465 LYS A 40 REMARK 465 GLU A 41 REMARK 465 VAL A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 ASN A 49 REMARK 465 ARG A 50 REMARK 465 ALA A 51 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 LYS A 55 REMARK 465 TRP A 56 REMARK 465 ARG A 57 REMARK 465 ARG A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 ALA A 62 REMARK 465 GLN A 63 REMARK 465 GLN A 64 REMARK 465 ALA A 176 REMARK 465 GLN A 177 REMARK 465 GLN A 178 REMARK 465 LYS A 179 REMARK 465 GLN A 180 REMARK 465 GLN A 181 REMARK 465 VAL A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 GLU A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 THR A 222 REMARK 465 SER A 223 REMARK 465 VAL A 224 REMARK 465 ALA D 20 REMARK 465 SER D 21 REMARK 465 THR D 22 REMARK 465 PHE D 23 REMARK 465 SER D 24 REMARK 465 GLY D 25 REMARK 465 VAL D 26 REMARK 465 THR D 174 REMARK 465 ARG D 175 REMARK 465 ALA D 176 REMARK 465 ALA D 177 REMARK 465 GLU D 178 REMARK 465 GLY D 179 REMARK 465 GLY D 180 REMARK 465 GLU D 181 REMARK 465 LYS D 182 REMARK 465 ILE D 183 REMARK 465 ALA D 184 REMARK 465 ALA D 185 REMARK 465 THR D 186 REMARK 465 SER D 187 REMARK 465 SER D 188 REMARK 465 ALA D 189 REMARK 465 GLU D 190 REMARK 465 GLY D 191 REMARK 465 GLY D 192 REMARK 465 ALA D 193 REMARK 465 ARG D 194 REMARK 465 ARG D 195 REMARK 465 LYS D 196 REMARK 465 ARG D 197 REMARK 465 SER D 198 REMARK 465 VAL D 199 REMARK 465 SER D 200 REMARK 465 ASP D 201 REMARK 465 THR D 202 REMARK 465 SER D 203 REMARK 465 ARG D 204 REMARK 465 TYR D 205 REMARK 465 HIS D 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U R 11 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 U R 20 O6 G S 44 1.99 REMARK 500 OP2 C R 18 NZ LYS A 117 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG D 67 NH2 ARG D 67 8556 1.89 REMARK 500 NH1 ARG D 67 NH1 ARG D 67 8556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C R 19 O5' - P - OP1 ANGL. DEV. = -14.0 DEGREES REMARK 500 C R 19 O5' - P - OP2 ANGL. DEV. = -19.4 DEGREES REMARK 500 C R 19 O3' - P - O5' ANGL. DEV. = 14.5 DEGREES REMARK 500 C R 19 O3' - P - OP2 ANGL. DEV. = -40.0 DEGREES REMARK 500 C R 19 O3' - P - OP1 ANGL. DEV. = -35.6 DEGREES REMARK 500 U S 40 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 LEU A 71 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 SER D 28 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 PRO D 66 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -70.25 -79.21 REMARK 500 GLN A 70 4.47 -63.34 REMARK 500 ASN A 81 84.09 -152.55 REMARK 500 ILE A 85 11.13 -59.74 REMARK 500 ARG A 87 27.09 -150.29 REMARK 500 ASP A 97 82.73 44.36 REMARK 500 LYS A 144 152.74 172.46 REMARK 500 ALA A 161 -90.11 -45.94 REMARK 500 THR A 173 -162.47 -103.33 REMARK 500 ARG A 174 117.76 -179.99 REMARK 500 VAL A 199 -24.04 -39.10 REMARK 500 SER D 28 51.98 -179.64 REMARK 500 PRO D 62 -169.29 -75.68 REMARK 500 PRO D 66 166.88 -47.76 REMARK 500 PRO D 71 -15.75 -46.41 REMARK 500 ASP D 73 98.43 -69.41 REMARK 500 ALA D 80 17.14 -67.59 REMARK 500 GLN D 137 21.56 -155.91 REMARK 500 MSE D 139 108.89 -50.94 REMARK 500 SER D 143 115.09 -166.21 REMARK 500 ASN D 148 -133.31 30.05 REMARK 500 HIS D 149 -3.13 -53.99 REMARK 500 VAL D 152 -72.54 -52.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 70 23.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GIA RELATED DB: PDB REMARK 900 RELATED ID: 2GID RELATED DB: PDB DBREF 2GJE A 30 224 UNP Q952G2 Q952G2_9TRYP 30 224 DBREF 2GJE D 20 206 UNP P90629 P90629_9TRYP 20 206 DBREF 2GJE R 1 39 PDB 2GJE 2GJE 1 39 DBREF 2GJE S 40 44 PDB 2GJE 2GJE 40 44 SEQADV 2GJE MSE A 110 UNP Q952G2 MET 110 MODIFIED RESIDUE SEQADV 2GJE MSE A 125 UNP Q952G2 MET 125 MODIFIED RESIDUE SEQADV 2GJE MSE A 204 UNP Q952G2 MET 204 MODIFIED RESIDUE SEQADV 2GJE GLU D 43 UNP P90629 LEU 43 CONFLICT SEQADV 2GJE MSE D 46 UNP P90629 MET 46 MODIFIED RESIDUE SEQADV 2GJE MSE D 109 UNP P90629 MET 109 MODIFIED RESIDUE SEQADV 2GJE MSE D 139 UNP P90629 MET 139 MODIFIED RESIDUE SEQRES 1 R 39 A A A U A C G A U G U A A SEQRES 2 R 39 A U A A C C U G U A G U A SEQRES 3 R 39 U A G U U A G U G U A U A SEQRES 1 S 5 U A G U G SEQRES 1 A 195 GLU ALA ALA SER SER SER ASP ALA ASP GLY LYS GLU VAL SEQRES 2 A 195 GLY SER SER GLY GLU GLY ASN ARG ALA THR GLY GLY LYS SEQRES 3 A 195 TRP ARG ARG PRO SER LEU ALA GLN GLN ARG ALA ARG ARG SEQRES 4 A 195 ALA GLN LEU PRO PRO ALA PHE ASP VAL VAL HIS TRP ASN SEQRES 5 A 195 ASP GLU ASP ILE SER ARG GLY HIS LEU LEU ARG VAL LEU SEQRES 6 A 195 HIS ARG ASP THR PHE VAL VAL LEU ASP TYR HIS ARG GLN SEQRES 7 A 195 ALA ARG MSE LEU THR GLU GLU GLY ASN LYS ALA GLU ARG SEQRES 8 A 195 VAL VAL SER VAL MSE LEU PRO ALA VAL TYR THR ALA ARG SEQRES 9 A 195 PHE LEU ALA VAL LEU GLU GLY ARG SER GLU LYS VAL GLU SEQRES 10 A 195 VAL HIS SER ARG TYR THR ASN ALA THR PHE THR PRO ASN SEQRES 11 A 195 PRO ALA ALA PRO TYR THR PHE THR LEU LYS CYS THR SER SEQRES 12 A 195 THR ARG PRO ALA GLN GLN LYS GLN GLN VAL ALA GLY GLU SEQRES 13 A 195 GLU GLY ASP GLU THR PHE GLU TRP THR VAL GLU PHE ASP SEQRES 14 A 195 VAL ALA GLU SER LEU MSE LEU GLN ARG PHE LEU THR GLN SEQRES 15 A 195 ALA LEU HIS TYR ASN THR GLY PHE ALA ARG THR SER VAL SEQRES 1 D 187 ALA SER THR PHE SER GLY VAL GLN SER LEU PRO LYS PHE SEQRES 2 D 187 GLU ILE HIS ASP VAL ARG ASP ASP PRO ALA GLU GLY THR SEQRES 3 D 187 MSE THR ARG VAL ALA VAL ASP GLY LYS LEU LEU LEU ILE SEQRES 4 D 187 SER GLN TYR PRO GLN LEU GLY PRO ARG LYS VAL ASP PRO SEQRES 5 D 187 ASN ASP LEU SER PRO GLN PHE ASP ALA ASP ARG ARG ILE SEQRES 6 D 187 SER VAL ARG LEU ARG HIS VAL ASP LEU ALA TYR LEU VAL SEQRES 7 D 187 GLY VAL CYS LYS GLU ARG VAL PRO ARG HIS ARG MSE GLU SEQRES 8 D 187 THR LYS ALA TYR THR LEU ASP PHE GLU LYS SER ALA GLN SEQRES 9 D 187 GLY TYR HIS LEU HIS GLY LYS VAL HIS ARG VAL ALA SER SEQRES 10 D 187 GLN ARG MSE GLU ASP TRP SER VAL LYS PHE ASP ASN HIS SEQRES 11 D 187 PHE ALA VAL THR LEU GLU HIS PHE LEU GLU SER ALA LEU SEQRES 12 D 187 ASP GLU SER PHE GLY PHE ARG GLN HIS TYR ALA THR ARG SEQRES 13 D 187 ALA ALA GLU GLY GLY GLU LYS ILE ALA ALA THR SER SER SEQRES 14 D 187 ALA GLU GLY GLY ALA ARG ARG LYS ARG SER VAL SER ASP SEQRES 15 D 187 THR SER ARG TYR HIS MODRES 2GJE MSE A 110 MET SELENOMETHIONINE MODRES 2GJE MSE A 125 MET SELENOMETHIONINE MODRES 2GJE MSE A 204 MET SELENOMETHIONINE MODRES 2GJE MSE D 46 MET SELENOMETHIONINE MODRES 2GJE MSE D 109 MET SELENOMETHIONINE MODRES 2GJE MSE D 139 MET SELENOMETHIONINE HET MSE A 110 8 HET MSE A 125 8 HET MSE A 204 8 HET MSE D 46 8 HET MSE D 109 8 HET MSE D 139 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 6(C5 H11 N O2 SE) FORMUL 5 HOH *(H2 O) HELIX 1 1 ARG A 65 LEU A 71 1 7 HELIX 2 2 ASP A 84 ARG A 87 5 4 HELIX 3 3 VAL A 129 GLU A 139 1 11 HELIX 4 4 ASP A 198 THR A 217 1 20 HELIX 5 5 ASP D 40 GLU D 43 5 4 HELIX 6 6 ARG D 89 LYS D 101 1 13 HELIX 7 7 ASN D 148 SER D 165 1 18 HELIX 8 8 GLY D 167 ALA D 173 1 7 SHEET 1 A 4 ALA A 74 HIS A 79 0 SHEET 2 A 4 HIS A 89 HIS A 95 -1 O VAL A 93 N PHE A 75 SHEET 3 A 4 PHE A 99 GLN A 107 -1 O VAL A 101 N LEU A 94 SHEET 4 A 4 ALA A 118 PRO A 127 -1 O VAL A 124 N LEU A 102 SHEET 1 B 4 VAL A 145 SER A 149 0 SHEET 2 B 4 THR A 152 PRO A 158 -1 O THR A 152 N SER A 149 SHEET 3 B 4 PHE A 166 SER A 172 -1 O THR A 171 N ASN A 153 SHEET 4 B 4 PHE A 191 PHE A 197 -1 O PHE A 191 N SER A 172 SHEET 1 C 4 LYS D 31 ASP D 36 0 SHEET 2 C 4 THR D 45 ASP D 52 -1 O THR D 45 N ASP D 36 SHEET 3 C 4 LEU D 55 PRO D 62 -1 O SER D 59 N ARG D 48 SHEET 4 C 4 ILE D 84 ARG D 87 -1 O ILE D 84 N GLN D 60 SHEET 1 D 4 ARG D 106 GLU D 110 0 SHEET 2 D 4 THR D 115 SER D 121 -1 O PHE D 118 N HIS D 107 SHEET 3 D 4 GLY D 124 VAL D 131 -1 O GLY D 124 N SER D 121 SHEET 4 D 4 GLU D 140 ASP D 147 -1 O PHE D 146 N TYR D 125 LINK C ARG A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N LEU A 111 1555 1555 1.34 LINK C VAL A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LEU A 126 1555 1555 1.32 LINK C LEU A 203 N MSE A 204 1555 1555 1.32 LINK C MSE A 204 N LEU A 205 1555 1555 1.33 LINK C THR D 45 N MSE D 46 1555 1555 1.32 LINK C MSE D 46 N THR D 47 1555 1555 1.33 LINK C ARG D 108 N MSE D 109 1555 1555 1.33 LINK C MSE D 109 N GLU D 110 1555 1555 1.33 LINK C ARG D 138 N MSE D 139 1555 1555 1.33 LINK C MSE D 139 N GLU D 140 1555 1555 1.33 CRYST1 157.600 157.600 81.300 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006345 0.003663 0.000000 0.00000 SCALE2 0.000000 0.007327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012300 0.00000 MASTER 500 0 6 8 16 0 0 6 0 0 0 34 END