HEADER LIGASE 28-MAR-06 2GI3 TITLE CRYSTAL STRUCTURE OF GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A TITLE 2 (TM1272) FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLU-ADT SUBUNIT A; COMPND 5 EC: 6.3.5.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: GATA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1272, GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A (GLU-ADT KEYWDS 2 SUBUNIT A), STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 13-JUL-11 2GI3 1 VERSN REVDAT 3 24-FEB-09 2GI3 1 VERSN REVDAT 2 02-MAY-06 2GI3 1 REMARK REVDAT 1 11-APR-06 2GI3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE JRNL TITL 2 SUBUNIT A (TM1272) FROM THERMOTOGA MARITIMA AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 57293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3640 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2523 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4924 ; 1.490 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6163 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 6.212 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;35.626 ;23.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;13.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3972 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 766 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2754 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1774 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1893 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.019 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 2.395 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 916 ; 0.570 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3679 ; 2.919 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 5.525 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1245 ; 7.143 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN REMARK 3 THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED REMARK 3 TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 2GI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB037145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918381, 0.978662 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR HORIZONTAL REMARK 200 AND VERTICAL FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : 0.15500 REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : 0.72900 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M CACL2, 30.0% MPD, 0.1M ACETATE REMARK 280 PH 4.6 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.32467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.66233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.66233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.32467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY AND STATIC LIGHT SCATTERING REMARK 300 DATA SUPPORT THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 20.66233 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 307 REMARK 465 ALA A 308 REMARK 465 ARG A 309 REMARK 465 PHE A 310 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 VAL A 313 REMARK 465 LYS A 314 REMARK 465 TYR A 315 REMARK 465 GLY A 316 REMARK 465 LEU A 317 REMARK 465 ARG A 318 REMARK 465 ILE A 319 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 LYS A 322 REMARK 465 GLY A 323 REMARK 465 LEU A 324 REMARK 465 ARG A 325 REMARK 465 GLU A 326 REMARK 465 MSE A 327 REMARK 465 TYR A 328 REMARK 465 MSE A 329 REMARK 465 LYS A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 ASN A 306 CG OD1 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 362 CE NZ REMARK 470 LYS A 474 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 101.31 -169.66 REMARK 500 LYS A 54 61.08 -107.29 REMARK 500 CYS A 78 29.09 48.95 REMARK 500 SER A 119 -4.13 -146.60 REMARK 500 THR A 120 -5.00 74.20 REMARK 500 ASP A 133 104.15 -173.25 REMARK 500 SER A 142 43.58 -91.26 REMARK 500 SER A 305 47.28 -97.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 481 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283137 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2GI3 A 1 475 UNP Q9X0Z9 GATA_THEMA 1 475 SEQADV 2GI3 GLY A 0 UNP Q9X0Z9 LEADER SEQUENCE SEQADV 2GI3 MSE A 1 UNP Q9X0Z9 MET 1 MODIFIED RESIDUE SEQADV 2GI3 MSE A 74 UNP Q9X0Z9 MET 74 MODIFIED RESIDUE SEQADV 2GI3 MSE A 98 UNP Q9X0Z9 MET 98 MODIFIED RESIDUE SEQADV 2GI3 MSE A 116 UNP Q9X0Z9 MET 116 MODIFIED RESIDUE SEQADV 2GI3 MSE A 153 UNP Q9X0Z9 MET 153 MODIFIED RESIDUE SEQADV 2GI3 MSE A 214 UNP Q9X0Z9 MET 214 MODIFIED RESIDUE SEQADV 2GI3 MSE A 245 UNP Q9X0Z9 MET 245 MODIFIED RESIDUE SEQADV 2GI3 MSE A 327 UNP Q9X0Z9 MET 327 MODIFIED RESIDUE SEQADV 2GI3 MSE A 329 UNP Q9X0Z9 MET 329 MODIFIED RESIDUE SEQADV 2GI3 MSE A 345 UNP Q9X0Z9 MET 345 MODIFIED RESIDUE SEQADV 2GI3 MSE A 364 UNP Q9X0Z9 MET 364 MODIFIED RESIDUE SEQADV 2GI3 MSE A 408 UNP Q9X0Z9 MET 408 MODIFIED RESIDUE SEQADV 2GI3 MSE A 467 UNP Q9X0Z9 MET 467 MODIFIED RESIDUE SEQRES 1 A 476 GLY MSE ILE ASP LEU ASP PHE ARG LYS LEU THR ILE GLU SEQRES 2 A 476 GLU CYS LEU LYS LEU SER GLU GLU GLU ARG GLU LYS LEU SEQRES 3 A 476 PRO GLN LEU SER LEU GLU THR ILE LYS ARG LEU ASP PRO SEQRES 4 A 476 HIS VAL LYS ALA PHE ILE SER VAL ARG GLU ASN VAL SER SEQRES 5 A 476 VAL GLU LYS LYS GLY LYS PHE TRP GLY ILE PRO VAL ALA SEQRES 6 A 476 ILE LYS ASP ASN ILE LEU THR LEU GLY MSE ARG THR THR SEQRES 7 A 476 CYS ALA SER ARG ILE LEU GLU ASN TYR GLU SER VAL PHE SEQRES 8 A 476 ASP ALA THR VAL VAL LYS LYS MSE LYS GLU ALA GLY PHE SEQRES 9 A 476 VAL VAL VAL GLY LYS ALA ASN LEU ASP GLU PHE ALA MSE SEQRES 10 A 476 GLY SER SER THR GLU ARG SER ALA PHE PHE PRO THR ARG SEQRES 11 A 476 ASN PRO TRP ASP LEU GLU ARG VAL PRO GLY GLY SER SER SEQRES 12 A 476 GLY GLY SER ALA ALA ALA VAL SER ALA GLY MSE VAL VAL SEQRES 13 A 476 ALA ALA LEU GLY SER ASP THR GLY GLY SER VAL ARG GLN SEQRES 14 A 476 PRO ALA SER LEU CYS GLY VAL VAL GLY TYR LYS PRO THR SEQRES 15 A 476 TYR GLY LEU VAL SER ARG TYR GLY LEU VAL ALA PHE ALA SEQRES 16 A 476 SER SER LEU ASP GLN ILE GLY PRO ILE THR LYS THR VAL SEQRES 17 A 476 ARG ASP ALA ALA ILE LEU MSE GLU ILE ILE SER GLY ARG SEQRES 18 A 476 ASP GLU ASN ASP ALA THR THR VAL ASN ARG LYS VAL ASP SEQRES 19 A 476 PHE LEU SER GLU ILE GLU GLU GLY VAL SER GLY MSE LYS SEQRES 20 A 476 PHE ALA VAL PRO GLU GLU ILE TYR GLU HIS ASP ILE GLU SEQRES 21 A 476 GLU GLY VAL SER GLU ARG PHE GLU GLU ALA LEU LYS LEU SEQRES 22 A 476 LEU GLU ARG LEU GLY ALA LYS VAL GLU ARG VAL LYS ILE SEQRES 23 A 476 PRO HIS ILE LYS TYR SER VAL ALA THR TYR TYR VAL ILE SEQRES 24 A 476 ALA PRO ALA GLU ALA SER SER ASN LEU ALA ARG PHE ASP SEQRES 25 A 476 GLY VAL LYS TYR GLY LEU ARG ILE LYS GLU LYS GLY LEU SEQRES 26 A 476 ARG GLU MSE TYR MSE LYS THR ARG ASN VAL GLY PHE GLY SEQRES 27 A 476 GLU GLU VAL ARG ARG ARG ILE MSE ILE GLY THR PHE THR SEQRES 28 A 476 LEU SER ALA ALA TYR TYR GLU ALA TYR PHE ASN LYS ALA SEQRES 29 A 476 MSE LYS VAL ARG ARG LYS ILE SER ASP GLU LEU ASN GLU SEQRES 30 A 476 VAL LEU SER GLN TYR ASP ALA ILE LEU THR PRO THR SER SEQRES 31 A 476 PRO VAL THR ALA PHE LYS ILE GLY GLU ILE LYS ASP PRO SEQRES 32 A 476 LEU THR TYR TYR LEU MSE ASP ILE PHE THR ILE PRO ALA SEQRES 33 A 476 ASN LEU ALA GLY LEU PRO ALA ILE SER VAL PRO PHE GLY SEQRES 34 A 476 PHE SER ASN ASN LEU PRO VAL GLY VAL GLN VAL ILE GLY SEQRES 35 A 476 ARG ARG PHE ALA ASP GLY LYS VAL PHE ARG ILE ALA ARG SEQRES 36 A 476 ALA ILE GLU LYS ASN SER PRO TYR ASN GLU ASN GLY MSE SEQRES 37 A 476 PHE PRO LEU PRO GLU VAL LYS ALA MODRES 2GI3 MSE A 1 MET SELENOMETHIONINE MODRES 2GI3 MSE A 74 MET SELENOMETHIONINE MODRES 2GI3 MSE A 98 MET SELENOMETHIONINE MODRES 2GI3 MSE A 116 MET SELENOMETHIONINE MODRES 2GI3 MSE A 153 MET SELENOMETHIONINE MODRES 2GI3 MSE A 214 MET SELENOMETHIONINE MODRES 2GI3 MSE A 245 MET SELENOMETHIONINE MODRES 2GI3 MSE A 345 MET SELENOMETHIONINE MODRES 2GI3 MSE A 364 MET SELENOMETHIONINE MODRES 2GI3 MSE A 408 MET SELENOMETHIONINE MODRES 2GI3 MSE A 467 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 74 12 HET MSE A 98 12 HET MSE A 116 8 HET MSE A 153 8 HET MSE A 214 8 HET MSE A 245 8 HET MSE A 345 8 HET MSE A 364 8 HET MSE A 408 8 HET MSE A 467 8 HET ACT A 476 4 HET ACT A 477 4 HET ACT A 478 4 HET MPD A 479 11 HET MPD A 480 11 HET MPD A 481 8 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 MPD 3(C6 H14 O2) FORMUL 8 HOH *339(H2 O) HELIX 1 1 ASP A 5 LEU A 9 5 5 HELIX 2 2 THR A 10 LEU A 15 1 6 HELIX 3 3 SER A 18 GLU A 23 1 6 HELIX 4 4 LYS A 24 LYS A 41 1 18 HELIX 5 5 SER A 80 GLU A 84 5 5 HELIX 6 6 ALA A 92 GLY A 102 1 11 HELIX 7 7 ASP A 112 MSE A 116 5 5 HELIX 8 8 SER A 142 ALA A 151 1 10 HELIX 9 9 VAL A 166 GLY A 174 1 9 HELIX 10 10 THR A 206 SER A 218 1 13 HELIX 11 11 GLU A 252 HIS A 256 5 5 HELIX 12 12 GLU A 259 LEU A 276 1 18 HELIX 13 13 HIS A 287 LYS A 289 5 3 HELIX 14 14 TYR A 290 SER A 305 1 16 HELIX 15 15 GLY A 335 TYR A 381 1 47 HELIX 16 16 ASP A 401 LEU A 407 1 7 HELIX 17 17 THR A 412 GLY A 419 1 8 HELIX 18 18 ALA A 445 SER A 460 1 16 SHEET 1 A11 PHE A 43 VAL A 46 0 SHEET 2 A11 VAL A 104 ALA A 109 -1 O LYS A 108 N ILE A 44 SHEET 3 A11 PRO A 62 LYS A 66 1 N VAL A 63 O VAL A 104 SHEET 4 A11 ALA A 156 ASP A 161 1 O LEU A 158 N LYS A 66 SHEET 5 A11 GLN A 199 THR A 204 -1 O ILE A 203 N ALA A 157 SHEET 6 A11 VAL A 176 LYS A 179 -1 N VAL A 176 O THR A 204 SHEET 7 A11 ALA A 422 SER A 430 -1 O ALA A 422 N LYS A 179 SHEET 8 A11 LEU A 433 ILE A 440 -1 O LEU A 433 N SER A 430 SHEET 9 A11 ALA A 383 PRO A 387 -1 N THR A 386 O GLN A 438 SHEET 10 A11 LYS A 246 PRO A 250 1 N ALA A 248 O LEU A 385 SHEET 11 A11 LYS A 279 VAL A 283 1 O LYS A 279 N PHE A 247 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLY A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N ARG A 75 1555 1555 1.31 LINK C LYS A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N LYS A 99 1555 1555 1.33 LINK C ALA A 115 N MSE A 116 1555 1555 1.32 LINK C MSE A 116 N GLY A 117 1555 1555 1.33 LINK C GLY A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N VAL A 154 1555 1555 1.34 LINK C LEU A 213 N MSE A 214 1555 1555 1.34 LINK C MSE A 214 N GLU A 215 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.34 LINK C MSE A 245 N LYS A 246 1555 1555 1.32 LINK C ILE A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N ILE A 346 1555 1555 1.33 LINK C ALA A 363 N MSE A 364 1555 1555 1.33 LINK C MSE A 364 N LYS A 365 1555 1555 1.33 LINK C LEU A 407 N MSE A 408 1555 1555 1.33 LINK C MSE A 408 N ASP A 409 1555 1555 1.33 LINK C GLY A 466 N MSE A 467 1555 1555 1.33 LINK C MSE A 467 N PHE A 468 1555 1555 1.33 CISPEP 1 GLY A 140 SER A 141 0 1.73 SITE 1 AC1 2 GLY A 419 ARG A 443 SITE 1 AC2 4 LYS A 57 ILE A 212 MPD A 481 HOH A 780 SITE 1 AC3 9 ARG A 230 SER A 379 GLN A 380 TYR A 381 SITE 2 AC3 9 ASP A 382 ARG A 442 LYS A 448 HOH A 627 SITE 3 AC3 9 HOH A 761 SITE 1 AC4 4 ARG A 122 THR A 350 LYS A 400 HOH A 742 SITE 1 AC5 6 LYS A 57 PHE A 58 GLU A 215 LEU A 235 SITE 2 AC5 6 ACT A 478 HOH A 779 CRYST1 131.776 131.776 61.987 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007590 0.004380 0.000000 0.00000 SCALE2 0.000000 0.008760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016130 0.00000 MASTER 371 0 17 18 11 0 8 6 0 0 0 37 END