HEADER CALCIUM-BINDING PROTEIN 27-MAR-06 2GHS TITLE CRYSTAL STRUCTURE OF A CALCIUM-BINDING PROTEIN, REGUCALCIN TITLE 2 (AGR_C_1268) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 1.55 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGR_C_1268P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: 15155668; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS REGUCALCIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, CALCIUM-BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 13-JUL-11 2GHS 1 VERSN REVDAT 3 28-JUL-10 2GHS 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2GHS 1 VERSN REVDAT 1 11-APR-06 2GHS 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CALCIUM-BINDING PROTEIN, REGUCALCIN JRNL TITL 2 (15155668) FROM AGROBACTERIUM TUMEFACIENS AT 1.55 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 76.6 REMARK 3 NUMBER OF REFLECTIONS : 30729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 784 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.569 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2332 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2128 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3180 ; 1.528 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4938 ; 0.810 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;29.808 ;23.232 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;12.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;12.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2656 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 361 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2123 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1140 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1435 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 231 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.068 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1480 ; 1.684 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 614 ; 0.524 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2381 ; 2.701 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 857 ; 4.138 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 791 ; 6.241 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4350 27.7770 -7.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0016 REMARK 3 T33: -0.0133 T12: 0.0143 REMARK 3 T13: 0.0298 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 9.1200 L22: 2.7950 REMARK 3 L33: 5.3446 L12: -1.7706 REMARK 3 L13: 4.9117 L23: -0.3241 REMARK 3 S TENSOR REMARK 3 S11: 0.1602 S12: 0.1087 S13: -0.0755 REMARK 3 S21: -0.0338 S22: -0.0748 S23: 0.0029 REMARK 3 S31: 0.5045 S32: -0.0651 S33: -0.0854 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8140 38.7430 12.7460 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: 0.0555 REMARK 3 T33: 0.0246 T12: 0.0090 REMARK 3 T13: 0.0022 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.1340 L22: 1.4117 REMARK 3 L33: 1.7559 L12: 0.2173 REMARK 3 L13: 0.1624 L23: -0.1949 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: 0.0073 S13: -0.0094 REMARK 3 S21: 0.0021 S22: -0.0261 S23: -0.1599 REMARK 3 S31: 0.1372 S32: 0.2176 S33: 0.0334 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1570 48.2550 16.9440 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0262 REMARK 3 T33: 0.0067 T12: 0.0120 REMARK 3 T13: 0.0059 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4484 L22: 0.4628 REMARK 3 L33: 1.6105 L12: -0.0004 REMARK 3 L13: 0.2706 L23: -0.3687 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: -0.0831 S13: 0.0418 REMARK 3 S21: 0.0882 S22: -0.0005 S23: 0.0335 REMARK 3 S31: -0.1118 S32: -0.1358 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8820 43.3230 0.1950 REMARK 3 T TENSOR REMARK 3 T11: -0.0172 T22: 0.0364 REMARK 3 T33: -0.0024 T12: 0.0112 REMARK 3 T13: -0.0050 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4269 L22: 1.0624 REMARK 3 L33: 1.2418 L12: -0.0839 REMARK 3 L13: 0.1270 L23: 0.0913 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0019 S13: -0.0066 REMARK 3 S21: -0.1381 S22: -0.0559 S23: 0.0607 REMARK 3 S31: -0.0375 S32: -0.1914 S33: 0.0503 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1160 36.3030 -0.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: 0.0325 REMARK 3 T33: 0.0384 T12: 0.0234 REMARK 3 T13: 0.0022 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.6373 L22: 2.6797 REMARK 3 L33: 3.4441 L12: 1.8350 REMARK 3 L13: -1.0237 L23: -0.2524 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0835 S13: 0.0417 REMARK 3 S21: -0.1260 S22: 0.0674 S23: -0.0364 REMARK 3 S31: 0.1191 S32: 0.0857 S33: -0.1052 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2240 32.7290 4.7690 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0423 REMARK 3 T33: 0.0297 T12: -0.0073 REMARK 3 T13: 0.0136 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.8486 L22: 1.4553 REMARK 3 L33: 2.4950 L12: 0.3033 REMARK 3 L13: 0.6847 L23: 0.3686 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: -0.0797 S13: -0.1065 REMARK 3 S21: -0.0293 S22: -0.0504 S23: 0.0613 REMARK 3 S31: 0.3619 S32: -0.1144 S33: -0.0539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2) THE NOMINAL RESOLUTION IS 1.70 A WITH 3511 OBSERVED REMARK 3 REFLECTIONS BETWEEN 1.70-1.55 (34.9% COMPLETE FOR THIS REMARK 3 SHELL) INCLUDED IN THE REFINEMENT. (3) TLSMD WAS USED TO REMARK 3 EVALUATE TLS GROUPINGS. (4) K+ AND CL- IONS WERE MODELED REMARK 3 BASED ON DENSITY HEIGHT, COORDINATION, ENVIRONMENT AND REMARK 3 CRYSTALLIZATION CONDITIONS. (5) THERE IS SOME DIFFERENCE REMARK 3 DENSITY NEAR GLU-40 THAT WAS LEFT UNMODELED. THE HOMOLOGOUS REMARK 3 SITE IN 1E1A IS A LOW AFINITY CA2+ BINDING SITE. THE REMARK 3 DENSITY DOES NOT LOOK LIKE CA2+ IN THIS STRUCTURE. REMARK 4 REMARK 4 2GHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB037134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370, 0.979156, 0.979535 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32369 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : 0.40600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2M NA_POTASSIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.12900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.76900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.85150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.76900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.12900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.85150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 PRO A 10 REMARK 465 MSE A 11 REMARK 465 MSE A 12 REMARK 465 GLN A 13 REMARK 465 PRO A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 ASP A 17 REMARK 465 LYS A 18 REMARK 465 SER A 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 20 N CB CG CD1 CD2 REMARK 470 ARG A 70 CD NE CZ NH1 NH2 REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 187 CD CE NZ REMARK 470 LYS A 259 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 119 78.63 -119.45 REMARK 500 ASN A 125 -130.71 -134.91 REMARK 500 ASP A 221 -132.87 -105.21 REMARK 500 HIS A 282 -17.99 78.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 645 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 671 DISTANCE = 5.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 315 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 119 O REMARK 620 2 ASN A 122 O 79.5 REMARK 620 3 HOH A 320 O 114.8 72.9 REMARK 620 4 ASP A 96 O 152.3 101.1 91.4 REMARK 620 5 HOH A 377 O 89.3 80.4 139.2 63.8 REMARK 620 6 GLU A 116 O 88.4 158.8 97.0 97.7 117.1 REMARK 620 7 HOH A 369 O 78.7 123.1 162.1 78.0 47.5 70.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 355654 RELATED DB: TARGETDB DBREF 2GHS A 1 314 UNP Q7D0W3 Q7D0W3_AGRT5 1 314 SEQADV 2GHS MSE A -11 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS GLY A -10 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS SER A -9 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS ASP A -8 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS LYS A -7 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS ILE A -6 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS HIS A -5 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS HIS A -4 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS HIS A -3 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS HIS A -2 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS HIS A -1 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS HIS A 0 UNP Q7D0W3 LEADER SEQUENCE SEQADV 2GHS MSE A 1 UNP Q7D0W3 MET 1 MODIFIED RESIDUE SEQADV 2GHS MSE A 11 UNP Q7D0W3 MET 11 MODIFIED RESIDUE SEQADV 2GHS MSE A 12 UNP Q7D0W3 MET 12 MODIFIED RESIDUE SEQADV 2GHS MSE A 36 UNP Q7D0W3 MET 36 MODIFIED RESIDUE SEQADV 2GHS MSE A 79 UNP Q7D0W3 MET 79 MODIFIED RESIDUE SEQADV 2GHS MSE A 129 UNP Q7D0W3 MET 129 MODIFIED RESIDUE SEQADV 2GHS MSE A 140 UNP Q7D0W3 MET 140 MODIFIED RESIDUE SEQADV 2GHS MSE A 192 UNP Q7D0W3 MET 192 MODIFIED RESIDUE SEQADV 2GHS MSE A 220 UNP Q7D0W3 MET 220 MODIFIED RESIDUE SEQRES 1 A 326 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 326 ASN ALA PRO LEU SER HIS SER ARG PRO MSE MSE GLN PRO SEQRES 3 A 326 SER GLU ASP LYS SER LEU ALA THR VAL PHE PRO PHE ALA SEQRES 4 A 326 GLY ARG VAL LEU ASP GLU THR PRO MSE LEU LEU GLY GLU SEQRES 5 A 326 GLY PRO THR PHE ASP PRO ALA SER GLY THR ALA TRP TRP SEQRES 6 A 326 PHE ASN ILE LEU GLU ARG GLU LEU HIS GLU LEU HIS LEU SEQRES 7 A 326 ALA SER GLY ARG LYS THR VAL HIS ALA LEU PRO PHE MSE SEQRES 8 A 326 GLY SER ALA LEU ALA LYS ILE SER ASP SER LYS GLN LEU SEQRES 9 A 326 ILE ALA SER ASP ASP GLY LEU PHE LEU ARG ASP THR ALA SEQRES 10 A 326 THR GLY VAL LEU THR LEU HIS ALA GLU LEU GLU SER ASP SEQRES 11 A 326 LEU PRO GLY ASN ARG SER ASN ASP GLY ARG MSE HIS PRO SEQRES 12 A 326 SER GLY ALA LEU TRP ILE GLY THR MSE GLY ARG LYS ALA SEQRES 13 A 326 GLU THR GLY ALA GLY SER ILE TYR HIS VAL ALA LYS GLY SEQRES 14 A 326 LYS VAL THR LYS LEU PHE ALA ASP ILE SER ILE PRO ASN SEQRES 15 A 326 SER ILE CYS PHE SER PRO ASP GLY THR THR GLY TYR PHE SEQRES 16 A 326 VAL ASP THR LYS VAL ASN ARG LEU MSE ARG VAL PRO LEU SEQRES 17 A 326 ASP ALA ARG THR GLY LEU PRO THR GLY LYS ALA GLU VAL SEQRES 18 A 326 PHE ILE ASP SER THR GLY ILE LYS GLY GLY MSE ASP GLY SEQRES 19 A 326 SER VAL CYS ASP ALA GLU GLY HIS ILE TRP ASN ALA ARG SEQRES 20 A 326 TRP GLY GLU GLY ALA VAL ASP ARG TYR ASP THR ASP GLY SEQRES 21 A 326 ASN HIS ILE ALA ARG TYR GLU VAL PRO GLY LYS GLN THR SEQRES 22 A 326 THR CYS PRO ALA PHE ILE GLY PRO ASP ALA SER ARG LEU SEQRES 23 A 326 LEU VAL THR SER ALA ARG GLU HIS LEU ASP ASP ASP ALA SEQRES 24 A 326 ILE THR ALA ASN PRO GLN HIS GLY LEU THR PHE GLU LEU SEQRES 25 A 326 GLY ILE GLU VAL LYS GLY ARG PHE GLU PRO LEU TYR ARG SEQRES 26 A 326 LEU MODRES 2GHS MSE A 36 MET SELENOMETHIONINE MODRES 2GHS MSE A 79 MET SELENOMETHIONINE MODRES 2GHS MSE A 129 MET SELENOMETHIONINE MODRES 2GHS MSE A 140 MET SELENOMETHIONINE MODRES 2GHS MSE A 192 MET SELENOMETHIONINE MODRES 2GHS MSE A 220 MET SELENOMETHIONINE HET MSE A 36 8 HET MSE A 79 8 HET MSE A 129 8 HET MSE A 140 8 HET MSE A 192 8 HET MSE A 220 8 HET K A 315 1 HET CL A 316 1 HET EDO A 317 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 K K 1+ FORMUL 3 CL CL 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *378(H2 O) HELIX 1 1 ASP A 284 ASN A 291 1 8 SHEET 1 A 5 THR A 22 PHE A 24 0 SHEET 2 A 5 HIS A 250 GLU A 255 1 O ARG A 253 N PHE A 24 SHEET 3 A 5 ALA A 240 TYR A 244 -1 N VAL A 241 O TYR A 254 SHEET 4 A 5 ILE A 231 TRP A 236 -1 N ASN A 233 O ASP A 242 SHEET 5 A 5 GLY A 219 CYS A 225 -1 N ASP A 221 O ALA A 234 SHEET 1 B 4 ARG A 29 ASP A 32 0 SHEET 2 B 4 THR A 297 GLU A 299 -1 O GLU A 299 N ARG A 29 SHEET 3 B 4 ARG A 273 SER A 278 -1 N VAL A 276 O PHE A 298 SHEET 4 B 4 THR A 261 ILE A 267 -1 N ALA A 265 O LEU A 275 SHEET 1 C 4 GLY A 39 ASP A 45 0 SHEET 2 C 4 THR A 50 ASN A 55 -1 O PHE A 54 N GLU A 40 SHEET 3 C 4 GLU A 60 HIS A 65 -1 O HIS A 62 N TRP A 53 SHEET 4 C 4 ARG A 70 ALA A 75 -1 O HIS A 74 N LEU A 61 SHEET 1 D 4 GLY A 80 SER A 87 0 SHEET 2 D 4 LYS A 90 SER A 95 -1 O LEU A 92 N ALA A 84 SHEET 3 D 4 GLY A 98 ASP A 103 -1 O PHE A 100 N ILE A 93 SHEET 4 D 4 LEU A 109 ALA A 113 -1 O HIS A 112 N LEU A 99 SHEET 1 E 4 ASN A 122 MSE A 129 0 SHEET 2 E 4 LEU A 135 GLY A 141 -1 O GLY A 138 N ASN A 125 SHEET 3 E 4 GLY A 149 ALA A 155 -1 O TYR A 152 N ILE A 137 SHEET 4 E 4 LYS A 158 ILE A 166 -1 O LEU A 162 N ILE A 151 SHEET 1 F 4 PRO A 169 PHE A 174 0 SHEET 2 F 4 THR A 180 ASP A 185 -1 O TYR A 182 N CYS A 173 SHEET 3 F 4 ARG A 190 PRO A 195 -1 O MSE A 192 N PHE A 183 SHEET 4 F 4 GLU A 208 ASP A 212 -1 O PHE A 210 N LEU A 191 LINK C PRO A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N LEU A 37 1555 1555 1.33 LINK C PHE A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N GLY A 80 1555 1555 1.32 LINK C ARG A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N HIS A 130 1555 1555 1.33 LINK C THR A 139 N MSE A 140 1555 1555 1.32 LINK C MSE A 140 N GLY A 141 1555 1555 1.33 LINK C LEU A 191 N MSE A 192 1555 1555 1.32 LINK C MSE A 192 N ARG A 193 1555 1555 1.33 LINK C GLY A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N ASP A 221 1555 1555 1.34 LINK K K A 315 O LEU A 119 1555 1555 2.70 LINK K K A 315 O ASN A 122 1555 1555 2.77 LINK K K A 315 O HOH A 320 1555 1555 2.82 LINK K K A 315 O ASP A 96 1555 1555 2.60 LINK K K A 315 O HOH A 377 1555 1555 3.66 LINK K K A 315 O GLU A 116 1555 1555 2.75 LINK K K A 315 O HOH A 369 1555 2565 2.86 SITE 1 AC1 6 ASP A 96 GLU A 116 LEU A 119 ASN A 122 SITE 2 AC1 6 HOH A 320 HOH A 369 SITE 1 AC2 4 MSE A 79 ARG A 142 LYS A 305 HOH A 355 SITE 1 AC3 5 GLU A 40 ARG A 123 ASN A 125 ASN A 170 SITE 2 AC3 5 ASP A 221 CRYST1 46.258 75.703 81.538 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021620 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012260 0.00000 MASTER 483 0 9 1 25 0 5 6 0 0 0 26 END