HEADER HYDROLASE 21-MAR-06 2GFH TITLE CRYSTAL STRUCTURE OF A N-ACETYLNEURAMINIC ACID PHOSPHATASE (NANP) FROM TITLE 2 MUS MUSCULUS AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: 17391249; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 13-JUL-11 2GFH 1 VERSN REVDAT 3 23-MAR-11 2GFH 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2GFH 1 VERSN REVDAT 1 18-APR-06 2GFH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN C20ORF147 HOMOLOG (17391249) JRNL TITL 2 FROM MUS MUSCULUS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 23709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.019 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1931 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1780 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2613 ; 1.513 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4127 ; 0.794 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 5.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;39.797 ;24.198 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;13.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2138 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 435 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1797 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 953 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1205 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.112 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.061 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.255 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 1.946 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 504 ; 0.581 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1969 ; 3.093 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 723 ; 5.042 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 642 ; 7.043 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 18 REMARK 3 RESIDUE RANGE : A 109 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2050 21.2220 11.8520 REMARK 3 T TENSOR REMARK 3 T11: -0.1375 T22: -0.1115 REMARK 3 T33: -0.2368 T12: 0.0347 REMARK 3 T13: 0.0839 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.3989 L22: 2.5462 REMARK 3 L33: 3.1544 L12: -0.5049 REMARK 3 L13: 0.5054 L23: -0.3751 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: -0.1091 S13: 0.0969 REMARK 3 S21: 0.0414 S22: 0.0560 S23: 0.1134 REMARK 3 S31: -0.0496 S32: -0.2443 S33: -0.2036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0600 29.7250 -14.2210 REMARK 3 T TENSOR REMARK 3 T11: -0.0271 T22: 0.0108 REMARK 3 T33: -0.0845 T12: 0.0872 REMARK 3 T13: -0.0255 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.8710 L22: 3.9727 REMARK 3 L33: 4.9017 L12: -1.2023 REMARK 3 L13: 0.9534 L23: -1.4669 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: 0.2413 S13: 0.1186 REMARK 3 S21: -0.6069 S22: -0.1244 S23: -0.0383 REMARK 3 S31: 0.1565 S32: 0.2451 S33: 0.0613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. NA, CL, PO4, AND EDO MODELED BASED ON REMARK 3 CRYSTALIIZATION CONDITIONS AND RELATED STRUCTURES. 3. BASED ON REMARK 3 HOMOLOGOUS STRUCTURES, NA COULD ALSO BE MODELED AS MG. 4. THERE REMARK 3 IS UNMODELED DENSITY NEAR LYS91 AND LYS243. 5. RESIDUES 63-66 ARE REMARK 3 DISORDERED AND WERE NOT MODELED. 6. ATOM RECORD CONTAINS RESIDUAL REMARK 3 B FACTORS ONLY. REMARK 4 REMARK 4 2GFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB037051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, ASYMMETRICALLY CUT SI(220) REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1X42A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M (NH4)H2PO3, 0.1M TRIS, PH 9.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.21067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.42133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.81600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 163.02667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.60533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.21067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 130.42133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 163.02667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.81600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.60533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.60533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 PRO A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 THR A 66 REMARK 465 VAL A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 ASP A 88 OD1 OD2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 161 CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 192 CG GLU A 192 CD 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -60.16 -95.48 REMARK 500 THR A 16 -58.27 -120.54 REMARK 500 LYS A 42 -129.49 -111.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 249 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 O REMARK 620 2 ASP A 189 OD1 92.7 REMARK 620 3 PO4 A 251 O3 93.3 149.0 REMARK 620 4 HOH A 312 O 110.1 108.9 97.5 REMARK 620 5 HOH A 350 O 152.7 89.8 71.7 94.7 REMARK 620 6 ASP A 12 OD2 94.9 75.8 73.4 154.1 59.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354784 RELATED DB: TARGETDB DBREF 2GFH A 1 248 UNP Q9CPT3 HDHD4_MOUSE 1 248 SEQADV 2GFH MET A -11 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH GLY A -10 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH SER A -9 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH ASP A -8 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH LYS A -7 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH ILE A -6 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH HIS A -5 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH HIS A -4 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH HIS A -3 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH HIS A -2 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH HIS A -1 UNP Q9CPT3 LEADER SEQUENCE SEQADV 2GFH HIS A 0 UNP Q9CPT3 LEADER SEQUENCE SEQRES 1 A 260 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 260 GLY LEU SER ARG VAL ARG ALA VAL PHE PHE ASP LEU ASP SEQRES 3 A 260 ASN THR LEU ILE ASP THR ALA GLY ALA SER ARG ARG GLY SEQRES 4 A 260 MET LEU GLU VAL ILE LYS LEU LEU GLN SER LYS TYR HIS SEQRES 5 A 260 TYR LYS GLU GLU ALA GLU ILE ILE CYS ASP LYS VAL GLN SEQRES 6 A 260 VAL LYS LEU SER LYS GLU CYS PHE HIS PRO TYR SER THR SEQRES 7 A 260 CYS ILE THR ASP VAL ARG THR SER HIS TRP GLU GLU ALA SEQRES 8 A 260 ILE GLN GLU THR LYS GLY GLY ALA ASP ASN ARG LYS LEU SEQRES 9 A 260 ALA GLU GLU CYS TYR PHE LEU TRP LYS SER THR ARG LEU SEQRES 10 A 260 GLN HIS MET ILE LEU ALA ASP ASP VAL LYS ALA MET LEU SEQRES 11 A 260 THR GLU LEU ARG LYS GLU VAL ARG LEU LEU LEU LEU THR SEQRES 12 A 260 ASN GLY ASP ARG GLN THR GLN ARG GLU LYS ILE GLU ALA SEQRES 13 A 260 CYS ALA CYS GLN SER TYR PHE ASP ALA ILE VAL ILE GLY SEQRES 14 A 260 GLY GLU GLN LYS GLU GLU LYS PRO ALA PRO SER ILE PHE SEQRES 15 A 260 TYR HIS CYS CYS ASP LEU LEU GLY VAL GLN PRO GLY ASP SEQRES 16 A 260 CYS VAL MET VAL GLY ASP THR LEU GLU THR ASP ILE GLN SEQRES 17 A 260 GLY GLY LEU ASN ALA GLY LEU LYS ALA THR VAL TRP ILE SEQRES 18 A 260 ASN LYS SER GLY ARG VAL PRO LEU THR SER SER PRO MET SEQRES 19 A 260 PRO HIS TYR MET VAL SER SER VAL LEU GLU LEU PRO ALA SEQRES 20 A 260 LEU LEU GLN SER ILE ASP CYS LYS VAL SER MET SER VAL HET NA A 249 1 HET CL A 250 1 HET PO4 A 251 5 HET EDO A 252 4 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA NA 1+ FORMUL 3 CL CL 1- FORMUL 4 PO4 O4 P 3- FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *108(H2 O) HELIX 1 1 ASP A 19 LYS A 38 1 20 HELIX 2 2 GLU A 43 LYS A 58 1 16 HELIX 3 3 CYS A 67 GLY A 85 1 19 HELIX 4 4 ASN A 89 HIS A 107 1 19 HELIX 5 5 ALA A 111 LYS A 123 1 13 HELIX 6 6 ASP A 134 ALA A 146 1 13 HELIX 7 7 CYS A 147 PHE A 151 5 5 HELIX 8 8 GLY A 158 GLN A 160 5 3 HELIX 9 9 ALA A 166 GLY A 178 1 13 HELIX 10 10 GLN A 180 GLY A 182 5 3 HELIX 11 11 THR A 193 ALA A 201 1 9 HELIX 12 12 SER A 229 LEU A 231 5 3 HELIX 13 13 GLU A 232 ASP A 241 1 10 SHEET 1 A 2 MET A 1 GLY A 2 0 SHEET 2 A 2 SER A 245 MET A 246 -1 O SER A 245 N GLY A 2 SHEET 1 B 6 ALA A 153 ILE A 156 0 SHEET 2 B 6 ARG A 126 THR A 131 1 N LEU A 129 O VAL A 155 SHEET 3 B 6 ALA A 8 PHE A 11 1 N VAL A 9 O ARG A 126 SHEET 4 B 6 CYS A 184 GLY A 188 1 O VAL A 185 N PHE A 10 SHEET 5 B 6 ALA A 205 ILE A 209 1 O VAL A 207 N MET A 186 SHEET 6 B 6 TYR A 225 VAL A 227 1 O TYR A 225 N TRP A 208 LINK NA NA A 249 O ASP A 14 1555 1555 2.51 LINK NA NA A 249 OD1 ASP A 189 1555 1555 2.25 LINK NA NA A 249 O3 PO4 A 251 1555 1555 2.30 LINK NA NA A 249 O HOH A 312 1555 1555 2.32 LINK NA NA A 249 O HOH A 350 1555 1555 2.34 LINK OD2 ASP A 12 NA NA A 249 1555 1555 2.78 CISPEP 1 LYS A 164 PRO A 165 0 12.67 SITE 1 AC1 6 ASP A 12 ASP A 14 ASP A 189 PO4 A 251 SITE 2 AC1 6 HOH A 312 HOH A 350 SITE 1 AC2 3 ARG A 72 ARG A 104 LYS A 141 SITE 1 AC3 9 ASP A 12 LEU A 13 ASP A 14 THR A 131 SITE 2 AC3 9 ASN A 132 LYS A 164 NA A 249 HOH A 288 SITE 3 AC3 9 HOH A 350 SITE 1 AC4 5 ASN A 15 THR A 16 LEU A 17 ILE A 18 SITE 2 AC4 5 HOH A 347 CRYST1 71.259 71.259 195.632 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014033 0.008102 0.000000 0.00000 SCALE2 0.000000 0.016204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005112 0.00000 MASTER 457 0 4 13 8 0 8 6 0 0 0 20 END