HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-MAR-06 2GDQ TITLE CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME TITLE 2 FROM BACILLUS SUBTILIS AT 1.8 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: YITF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YITF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME, TIM-BARREL, ENOLASE, KEYWDS 2 OCTAMER, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW KEYWDS 3 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN KEYWDS 4 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,K.D.SCHWINN,S.EMTAGE,D.A.THOMPSON, AUTHOR 2 M.E.RUTTER,M.DICKEY,C.GROSHONG,K.T.BAIN,J.M.ADAMS,C.REYES,I.ROONEY, AUTHOR 3 A.POWELL,A.BOICE,T.GHEYI,S.OZYURT,S.ATWELL,S.R.WASSERMAN,S.K.BURLEY, AUTHOR 4 A.SALI,P.BABBITT,U.PIEPER,J.A.GERLT,S.C.ALMO,NEW YORK SGX RESEARCH AUTHOR 5 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 03-FEB-21 2GDQ 1 AUTHOR JRNL SEQADV REVDAT 5 14-NOV-18 2GDQ 1 AUTHOR REVDAT 4 18-OCT-17 2GDQ 1 REMARK REVDAT 3 13-JUL-11 2GDQ 1 VERSN REVDAT 2 24-FEB-09 2GDQ 1 VERSN REVDAT 1 04-APR-06 2GDQ 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,K.D.SCHWINN,S.EMTAGE, JRNL AUTH 2 D.A.THOMPSON,M.E.RUTTER,M.DICKEY,C.GROSHONG,K.T.BAIN, JRNL AUTH 3 J.M.ADAMS,C.REYES,I.ROONEY,A.POWELL,A.BOICE,T.GHEYI, JRNL AUTH 4 S.OZYURT,S.ATWELL,S.R.WASSERMAN,S.K.BURLEY,A.SALI,P.BABBITT, JRNL AUTH 5 U.PIEPER,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING JRNL TITL 2 ENZYME FROM BACILLUS SUBTILIS AT 1.8 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 70202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3965 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 741 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6123 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8301 ; 1.436 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 5.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;33.491 ;23.380 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1033 ;14.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;19.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 877 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4694 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3084 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4212 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 587 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.236 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3832 ; 1.029 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5991 ; 1.533 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2688 ; 2.426 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2310 ; 3.594 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SGX-CAT REMARK 200 OPTICS : SGX-CAT REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M TRIS, PH REMARK 280 8.5, 25% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.62300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.30600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.62300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.30600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.62300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.30600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.62300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.30600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A OCTAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X,1-Y,Z; X,1-Y,-Z; REMARK 300 -X,Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 27170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 99180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 113.24600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 113.24600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1153 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1167 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 465 HIS B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 271 O HOH A 1009 1.96 REMARK 500 O HOH B 803 O HOH B 1064 1.99 REMARK 500 O HOH B 1067 O HOH B 1121 2.09 REMARK 500 O HOH B 1071 O HOH B 1146 2.16 REMARK 500 O HOH B 852 O HOH B 1058 2.19 REMARK 500 O HOH B 802 O HOH B 1047 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 34 CB CYS A 34 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 65 -52.72 -129.15 REMARK 500 SER A 77 56.58 -91.12 REMARK 500 HIS A 89 104.53 -161.92 REMARK 500 SER A 136 139.96 -170.90 REMARK 500 ALA A 294 29.26 -149.26 REMARK 500 SER A 298 -62.77 -144.12 REMARK 500 ASP A 320 69.12 -153.16 REMARK 500 ASN A 332 102.12 -169.86 REMARK 500 ASN A 360 98.53 -69.81 REMARK 500 ARG B 65 -55.65 -134.78 REMARK 500 HIS B 89 105.79 -165.74 REMARK 500 ALA B 294 26.30 -152.60 REMARK 500 SER B 298 -63.20 -139.56 REMARK 500 SER B 298 -62.49 -140.97 REMARK 500 ASP B 320 69.70 -151.94 REMARK 500 ASN B 332 101.04 -171.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MUC RELATED DB: PDB REMARK 900 MUCONATE LACTONIZING ENZYME REMARK 900 RELATED ID: 1YEY RELATED DB: PDB REMARK 900 L-FUCONATE DEHYDRATASE FROM 2 XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS REMARK 900 STR. ATCC 33913 REMARK 900 RELATED ID: NYSGXRC-9293A RELATED DB: TARGETDB DBREF 2GDQ A 5 374 UNP O06741 O06741_BACSU 2 371 DBREF 2GDQ B 5 374 UNP O06741 O06741_BACSU 2 371 SEQADV 2GDQ MET A 1 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ ALA A 2 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ LEU A 3 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ VAL A 4 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ GLU A 375 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ GLY A 376 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ HIS A 377 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS A 378 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS A 379 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS A 380 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS A 381 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS A 382 UNP O06741 EXPRESSION TAG SEQADV 2GDQ MET B 1 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ ALA B 2 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ LEU B 3 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ VAL B 4 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ GLU B 375 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ GLY B 376 UNP O06741 CLONING ARTIFACT SEQADV 2GDQ HIS B 377 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS B 378 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS B 379 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS B 380 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS B 381 UNP O06741 EXPRESSION TAG SEQADV 2GDQ HIS B 382 UNP O06741 EXPRESSION TAG SEQRES 1 A 382 MET ALA LEU VAL LYS ILE VAL ARG ILE GLU THR PHE PRO SEQRES 2 A 382 LEU PHE HIS ARG LEU GLU LYS PRO TYR GLY ASP ALA ASN SEQRES 3 A 382 GLY PHE LYS ARG TYR ARG THR CYS TYR LEU ILE ARG ILE SEQRES 4 A 382 ILE THR GLU SER GLY ILE ASP GLY TRP GLY GLU CYS VAL SEQRES 5 A 382 ASP TRP LEU PRO ALA LEU HIS VAL GLY PHE THR LYS ARG SEQRES 6 A 382 ILE ILE PRO PHE LEU LEU GLY LYS GLN ALA GLY SER ARG SEQRES 7 A 382 LEU SER LEU VAL ARG THR ILE GLN LYS TRP HIS GLN ARG SEQRES 8 A 382 ALA ALA SER ALA VAL SER MET ALA LEU THR GLU ILE ALA SEQRES 9 A 382 ALA LYS ALA ALA ASP CYS SER VAL CYS GLU LEU TRP GLY SEQRES 10 A 382 GLY ARG TYR ARG GLU GLU ILE PRO VAL TYR ALA SER PHE SEQRES 11 A 382 GLN SER TYR SER ASP SER PRO GLN TRP ILE SER ARG SER SEQRES 12 A 382 VAL SER ASN VAL GLU ALA GLN LEU LYS LYS GLY PHE GLU SEQRES 13 A 382 GLN ILE LYS VAL LYS ILE GLY GLY THR SER PHE LYS GLU SEQRES 14 A 382 ASP VAL ARG HIS ILE ASN ALA LEU GLN HIS THR ALA GLY SEQRES 15 A 382 SER SER ILE THR MET ILE LEU ASP ALA ASN GLN SER TYR SEQRES 16 A 382 ASP ALA ALA ALA ALA PHE LYS TRP GLU ARG TYR PHE SER SEQRES 17 A 382 GLU TRP THR ASN ILE GLY TRP LEU GLU GLU PRO LEU PRO SEQRES 18 A 382 PHE ASP GLN PRO GLN ASP TYR ALA MET LEU ARG SER ARG SEQRES 19 A 382 LEU SER VAL PRO VAL ALA GLY GLY GLU ASN MET LYS GLY SEQRES 20 A 382 PRO ALA GLN TYR VAL PRO LEU LEU SER GLN ARG CYS LEU SEQRES 21 A 382 ASP ILE ILE GLN PRO ASP VAL MET HIS VAL ASN GLY ILE SEQRES 22 A 382 ASP GLU PHE ARG ASP CYS LEU GLN LEU ALA ARG TYR PHE SEQRES 23 A 382 GLY VAL ARG ALA SER ALA HIS ALA TYR ASP GLY SER LEU SEQRES 24 A 382 SER ARG LEU TYR ALA LEU PHE ALA GLN ALA CYS LEU PRO SEQRES 25 A 382 PRO TRP SER LYS MET LYS ASN ASP HIS ILE GLU PRO ILE SEQRES 26 A 382 GLU TRP ASP VAL MET GLU ASN PRO PHE THR ASP LEU VAL SEQRES 27 A 382 SER LEU GLN PRO SER LYS GLY MET VAL HIS ILE PRO LYS SEQRES 28 A 382 GLY LYS GLY ILE GLY THR GLU ILE ASN MET GLU ILE VAL SEQRES 29 A 382 ASN ARG TYR LYS TRP ASP GLY SER ALA TYR GLU GLY HIS SEQRES 30 A 382 HIS HIS HIS HIS HIS SEQRES 1 B 382 MET ALA LEU VAL LYS ILE VAL ARG ILE GLU THR PHE PRO SEQRES 2 B 382 LEU PHE HIS ARG LEU GLU LYS PRO TYR GLY ASP ALA ASN SEQRES 3 B 382 GLY PHE LYS ARG TYR ARG THR CYS TYR LEU ILE ARG ILE SEQRES 4 B 382 ILE THR GLU SER GLY ILE ASP GLY TRP GLY GLU CYS VAL SEQRES 5 B 382 ASP TRP LEU PRO ALA LEU HIS VAL GLY PHE THR LYS ARG SEQRES 6 B 382 ILE ILE PRO PHE LEU LEU GLY LYS GLN ALA GLY SER ARG SEQRES 7 B 382 LEU SER LEU VAL ARG THR ILE GLN LYS TRP HIS GLN ARG SEQRES 8 B 382 ALA ALA SER ALA VAL SER MET ALA LEU THR GLU ILE ALA SEQRES 9 B 382 ALA LYS ALA ALA ASP CYS SER VAL CYS GLU LEU TRP GLY SEQRES 10 B 382 GLY ARG TYR ARG GLU GLU ILE PRO VAL TYR ALA SER PHE SEQRES 11 B 382 GLN SER TYR SER ASP SER PRO GLN TRP ILE SER ARG SER SEQRES 12 B 382 VAL SER ASN VAL GLU ALA GLN LEU LYS LYS GLY PHE GLU SEQRES 13 B 382 GLN ILE LYS VAL LYS ILE GLY GLY THR SER PHE LYS GLU SEQRES 14 B 382 ASP VAL ARG HIS ILE ASN ALA LEU GLN HIS THR ALA GLY SEQRES 15 B 382 SER SER ILE THR MET ILE LEU ASP ALA ASN GLN SER TYR SEQRES 16 B 382 ASP ALA ALA ALA ALA PHE LYS TRP GLU ARG TYR PHE SER SEQRES 17 B 382 GLU TRP THR ASN ILE GLY TRP LEU GLU GLU PRO LEU PRO SEQRES 18 B 382 PHE ASP GLN PRO GLN ASP TYR ALA MET LEU ARG SER ARG SEQRES 19 B 382 LEU SER VAL PRO VAL ALA GLY GLY GLU ASN MET LYS GLY SEQRES 20 B 382 PRO ALA GLN TYR VAL PRO LEU LEU SER GLN ARG CYS LEU SEQRES 21 B 382 ASP ILE ILE GLN PRO ASP VAL MET HIS VAL ASN GLY ILE SEQRES 22 B 382 ASP GLU PHE ARG ASP CYS LEU GLN LEU ALA ARG TYR PHE SEQRES 23 B 382 GLY VAL ARG ALA SER ALA HIS ALA TYR ASP GLY SER LEU SEQRES 24 B 382 SER ARG LEU TYR ALA LEU PHE ALA GLN ALA CYS LEU PRO SEQRES 25 B 382 PRO TRP SER LYS MET LYS ASN ASP HIS ILE GLU PRO ILE SEQRES 26 B 382 GLU TRP ASP VAL MET GLU ASN PRO PHE THR ASP LEU VAL SEQRES 27 B 382 SER LEU GLN PRO SER LYS GLY MET VAL HIS ILE PRO LYS SEQRES 28 B 382 GLY LYS GLY ILE GLY THR GLU ILE ASN MET GLU ILE VAL SEQRES 29 B 382 ASN ARG TYR LYS TRP ASP GLY SER ALA TYR GLU GLY HIS SEQRES 30 B 382 HIS HIS HIS HIS HIS FORMUL 3 HOH *741(H2 O) HELIX 1 1 TRP A 54 ARG A 65 1 12 HELIX 2 2 ARG A 65 LEU A 71 1 7 HELIX 3 3 SER A 77 HIS A 89 1 13 HELIX 4 4 HIS A 89 ALA A 108 1 20 HELIX 5 5 SER A 111 TRP A 116 1 6 HELIX 6 6 GLN A 138 LYS A 152 1 15 HELIX 7 7 SER A 166 GLY A 182 1 17 HELIX 8 8 ASP A 196 LYS A 202 1 7 HELIX 9 9 TRP A 203 SER A 208 1 6 HELIX 10 10 GLN A 224 SER A 233 1 10 HELIX 11 11 GLY A 247 GLN A 257 1 11 HELIX 12 12 ASN A 271 GLY A 287 1 17 HELIX 13 13 SER A 298 CYS A 310 1 13 HELIX 14 14 ASN A 332 VAL A 338 5 7 HELIX 15 15 ASN A 360 TYR A 367 1 8 HELIX 16 16 TRP B 54 ARG B 65 1 12 HELIX 17 17 ARG B 65 LEU B 71 1 7 HELIX 18 18 SER B 77 LYS B 87 1 11 HELIX 19 19 HIS B 89 ALA B 108 1 20 HELIX 20 20 SER B 111 TRP B 116 1 6 HELIX 21 21 GLN B 138 LYS B 153 1 16 HELIX 22 22 SER B 166 GLY B 182 1 17 HELIX 23 23 ASP B 196 LYS B 202 1 7 HELIX 24 24 TRP B 203 SER B 208 1 6 HELIX 25 25 GLN B 224 SER B 233 1 10 HELIX 26 26 GLY B 247 GLN B 257 1 11 HELIX 27 27 GLY B 272 GLY B 287 1 16 HELIX 28 28 SER B 298 CYS B 310 1 13 HELIX 29 29 ASN B 332 LEU B 337 5 6 HELIX 30 30 ASN B 360 TYR B 367 1 8 SHEET 1 A 3 ILE A 6 ASP A 24 0 SHEET 2 A 3 GLY A 27 THR A 41 -1 O ILE A 40 N ARG A 8 SHEET 3 A 3 ASP A 46 CYS A 51 -1 O GLY A 47 N ILE A 39 SHEET 1 B 8 ARG A 289 ALA A 290 0 SHEET 2 B 8 ILE A 262 ILE A 263 1 N ILE A 263 O ARG A 289 SHEET 3 B 8 VAL A 239 GLY A 241 1 N GLY A 241 O ILE A 262 SHEET 4 B 8 ILE A 213 GLU A 217 1 N LEU A 216 O ALA A 240 SHEET 5 B 8 THR A 186 ASP A 190 1 N LEU A 189 O GLU A 217 SHEET 6 B 8 GLN A 157 LYS A 161 1 N ILE A 158 O THR A 186 SHEET 7 B 8 GLU A 123 SER A 129 1 N ALA A 128 O LYS A 159 SHEET 8 B 8 ILE A 325 ASP A 328 1 O TRP A 327 N SER A 129 SHEET 1 C 8 ARG A 289 ALA A 290 0 SHEET 2 C 8 ILE A 262 ILE A 263 1 N ILE A 263 O ARG A 289 SHEET 3 C 8 VAL A 239 GLY A 241 1 N GLY A 241 O ILE A 262 SHEET 4 C 8 ILE A 213 GLU A 217 1 N LEU A 216 O ALA A 240 SHEET 5 C 8 THR A 186 ASP A 190 1 N LEU A 189 O GLU A 217 SHEET 6 C 8 GLN A 157 LYS A 161 1 N ILE A 158 O THR A 186 SHEET 7 C 8 GLU A 123 SER A 129 1 N ALA A 128 O LYS A 159 SHEET 8 C 8 MET A 346 HIS A 348 -1 O VAL A 347 N ILE A 124 SHEET 1 D 3 ILE B 6 ASP B 24 0 SHEET 2 D 3 GLY B 27 THR B 41 -1 O LYS B 29 N TYR B 22 SHEET 3 D 3 ASP B 46 CYS B 51 -1 O GLY B 47 N ILE B 39 SHEET 1 E 8 ARG B 289 ALA B 290 0 SHEET 2 E 8 ILE B 262 ILE B 263 1 N ILE B 263 O ARG B 289 SHEET 3 E 8 VAL B 239 GLY B 241 1 N GLY B 241 O ILE B 262 SHEET 4 E 8 ILE B 213 GLU B 217 1 N LEU B 216 O ALA B 240 SHEET 5 E 8 THR B 186 ASP B 190 1 N LEU B 189 O GLU B 217 SHEET 6 E 8 GLN B 157 LYS B 161 1 N VAL B 160 O ASP B 190 SHEET 7 E 8 GLU B 123 SER B 129 1 N ALA B 128 O LYS B 159 SHEET 8 E 8 ILE B 325 ASP B 328 1 O TRP B 327 N SER B 129 SHEET 1 F 8 ARG B 289 ALA B 290 0 SHEET 2 F 8 ILE B 262 ILE B 263 1 N ILE B 263 O ARG B 289 SHEET 3 F 8 VAL B 239 GLY B 241 1 N GLY B 241 O ILE B 262 SHEET 4 F 8 ILE B 213 GLU B 217 1 N LEU B 216 O ALA B 240 SHEET 5 F 8 THR B 186 ASP B 190 1 N LEU B 189 O GLU B 217 SHEET 6 F 8 GLN B 157 LYS B 161 1 N VAL B 160 O ASP B 190 SHEET 7 F 8 GLU B 123 SER B 129 1 N ALA B 128 O LYS B 159 SHEET 8 F 8 MET B 346 HIS B 348 -1 O VAL B 347 N ILE B 124 CRYST1 82.374 113.246 168.612 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005931 0.00000 MASTER 396 0 0 30 38 0 0 6 0 0 0 60 END