HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-MAR-06 2G7U TITLE 2.3 A STRUCTURE OF PUTATIVE CATECHOL DEGRADATIVE OPERON REGULATOR FROM TITLE 2 RHODOCOCCUS SP. RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 GENE: RHA05304; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS TRANSCRIPTIONAL REGULATOR, ICLR FAMILY, STRUCTURAL GENOMICS, MCSG, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHENG,T.SKARINA,M.CHRUSZCZ,M.CYMBOROWSKI,M.GRABOWSKI,O.ONOPRIYENKO, AUTHOR 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (MCSG) REVDAT 4 05-OCT-11 2G7U 1 AUTHOR REVDAT 3 13-JUL-11 2G7U 1 VERSN REVDAT 2 24-FEB-09 2G7U 1 VERSN REVDAT 1 04-APR-06 2G7U 0 JRNL AUTH H.ZHENG,T.SKARINA,M.CHRUSZCZ,M.CYMBOROWSKI,M.GRABOWSKI, JRNL AUTH 2 O.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS,W.MINOR JRNL TITL 2.3 A STRUCTURE OF PUTATIVE CATECHOL DEGRADATIVE OPERON JRNL TITL 2 REGULATOR FROM RHODOCOCCUS SP. RHA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 539 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7453 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10142 ; 1.347 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 993 ; 5.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;31.987 ;22.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1185 ;16.012 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;18.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1218 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5579 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3634 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5277 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 531 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5077 ; 2.234 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7896 ; 2.773 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 5.718 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2246 ; 8.227 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G7U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB036797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97934 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI 111 CHANNEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 93.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE/ REMARK 200 RESOLVE, ARP/WARP, O, COOT, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M LI SULPHATE, 0.1M REMARK 280 BIS-TRIS, CRYO CONDITION IS 8/8/8% (SUCR,GLYCER,550MME)IN MAG. REMARK 280 SOL., PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.26000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.26000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.18000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.26000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.18000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.26000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER, THERE ARE TWO DIMERS IN REMARK 300 AN ASYMMETRIC UNIT. CHAIN A AND B FORMS A DIMER, CHAIN C AND D REMARK 300 FORMS ANOTHER DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.40700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.18000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 GLY A 256 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 GLY B 256 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 SER C 4 REMARK 465 ASP C 5 REMARK 465 ARG C 6 REMARK 465 ASP C 7 REMARK 465 TYR C 8 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 SER D 4 REMARK 465 ASP D 5 REMARK 465 ARG D 6 REMARK 465 ASP D 7 REMARK 465 TYR D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 10 CG CD OE1 NE2 REMARK 470 ILE C 12 CG2 CD1 REMARK 470 ARG C 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 54 CD CE NZ REMARK 470 GLN D 10 CG CD OE1 NE2 REMARK 470 ARG D 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 46 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 -163.97 -162.15 REMARK 500 ASN A 28 56.75 -143.28 REMARK 500 ASP A 210 -166.49 -107.01 REMARK 500 GLN B 165 155.79 -44.28 REMARK 500 ASP C 23 -167.52 -163.15 REMARK 500 ARG C 26 69.61 -115.52 REMARK 500 MSE C 125 15.29 -140.09 REMARK 500 ARG D 26 78.53 -116.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6051 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO DATABASE REFERENCE WAS AVAILABLE AT THE TIME OF REMARK 999 PROCESSING FOR THIS STRUCTURE. DBREF 2G7U A 1 256 UNP O33539 O33539_RHOOP 1 256 DBREF 2G7U B 1 256 UNP O33539 O33539_RHOOP 1 256 DBREF 2G7U C 1 256 UNP O33539 O33539_RHOOP 1 256 DBREF 2G7U D 1 256 UNP O33539 O33539_RHOOP 1 256 SEQRES 1 A 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 A 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 A 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 A 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 A 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 A 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 A 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 A 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 A 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 A 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 A 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 A 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 A 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 A 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 A 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 A 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 A 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 A 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 A 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 A 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY SEQRES 1 B 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 B 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 B 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 B 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 B 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 B 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 B 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 B 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 B 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 B 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 B 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 B 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 B 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 B 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 B 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 B 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 B 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 B 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 B 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 B 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY SEQRES 1 C 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 C 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 C 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 C 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 C 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 C 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 C 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 C 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 C 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 C 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 C 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 C 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 C 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 C 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 C 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 C 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 C 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 C 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 C 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 C 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY SEQRES 1 D 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 D 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 D 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 D 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 D 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 D 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 D 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 D 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 D 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 D 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 D 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 D 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 D 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 D 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 D 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 D 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 D 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 D 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 D 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 D 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY MODRES 2G7U MSE A 89 MET SELENOMETHIONINE MODRES 2G7U MSE A 125 MET SELENOMETHIONINE MODRES 2G7U MSE A 142 MET SELENOMETHIONINE MODRES 2G7U MSE A 252 MET SELENOMETHIONINE MODRES 2G7U MSE B 89 MET SELENOMETHIONINE MODRES 2G7U MSE B 125 MET SELENOMETHIONINE MODRES 2G7U MSE B 142 MET SELENOMETHIONINE MODRES 2G7U MSE B 252 MET SELENOMETHIONINE MODRES 2G7U MSE C 89 MET SELENOMETHIONINE MODRES 2G7U MSE C 125 MET SELENOMETHIONINE MODRES 2G7U MSE C 142 MET SELENOMETHIONINE MODRES 2G7U MSE C 252 MET SELENOMETHIONINE MODRES 2G7U MSE D 89 MET SELENOMETHIONINE MODRES 2G7U MSE D 125 MET SELENOMETHIONINE MODRES 2G7U MSE D 142 MET SELENOMETHIONINE MODRES 2G7U MSE D 252 MET SELENOMETHIONINE HET MSE A 89 8 HET MSE A 125 8 HET MSE A 142 8 HET MSE A 252 8 HET MSE B 89 8 HET MSE B 125 8 HET MSE B 142 8 HET MSE B 252 8 HET MSE C 89 8 HET MSE C 125 8 HET MSE C 142 8 HET MSE C 252 8 HET MSE D 89 8 HET MSE D 125 8 HET MSE D 142 8 HET MSE D 252 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *539(H2 O) HELIX 1 1 ILE A 9 ALA A 21 1 13 HELIX 2 2 THR A 30 GLY A 39 1 10 HELIX 3 3 SER A 41 LEU A 55 1 15 HELIX 4 4 VAL A 71 GLN A 76 1 6 HELIX 5 5 SER A 79 GLN A 100 1 22 HELIX 6 6 THR A 140 ALA A 148 1 9 HELIX 7 7 PRO A 151 SER A 162 1 12 HELIX 8 8 THR A 174 GLY A 189 1 16 HELIX 9 9 THR A 229 MSE A 252 1 24 HELIX 10 10 ILE B 9 ALA B 21 1 13 HELIX 11 11 THR B 30 GLY B 39 1 10 HELIX 12 12 SER B 41 LEU B 55 1 15 HELIX 13 13 PRO B 69 SER B 81 1 13 HELIX 14 14 ALA B 83 GLN B 100 1 18 HELIX 15 15 THR B 140 ALA B 148 1 9 HELIX 16 16 PRO B 151 SER B 162 1 12 HELIX 17 17 THR B 174 GLY B 189 1 16 HELIX 18 18 THR B 229 MSE B 252 1 24 HELIX 19 19 ILE C 9 LEU C 20 1 12 HELIX 20 20 THR C 30 GLY C 39 1 10 HELIX 21 21 SER C 41 GLY C 56 1 16 HELIX 22 22 PRO C 69 TYR C 78 5 10 HELIX 23 23 SER C 79 GLN C 100 1 22 HELIX 24 24 THR C 140 ALA C 148 1 9 HELIX 25 25 PRO C 151 SER C 162 1 12 HELIX 26 26 THR C 174 GLY C 189 1 16 HELIX 27 27 THR C 229 MSE C 252 1 24 HELIX 28 28 ILE D 9 LEU D 20 1 12 HELIX 29 29 THR D 30 GLY D 39 1 10 HELIX 30 30 SER D 41 LEU D 55 1 15 HELIX 31 31 PRO D 69 VAL D 71 5 3 HELIX 32 32 LEU D 72 HIS D 82 1 11 HELIX 33 33 HIS D 82 GLN D 100 1 19 HELIX 34 34 THR D 140 ALA D 148 1 9 HELIX 35 35 PRO D 151 SER D 162 1 12 HELIX 36 36 THR D 174 GLY D 189 1 16 HELIX 37 37 THR D 229 MSE D 252 1 24 SHEET 1 A 2 VAL A 58 SER A 61 0 SHEET 2 A 2 ARG A 64 LEU A 67 -1 O ARG A 64 N SER A 61 SHEET 1 B 6 ARG A 134 PRO A 136 0 SHEET 2 B 6 ASP A 112 VAL A 119 -1 N VAL A 113 O VAL A 135 SHEET 3 B 6 ALA A 103 ASP A 109 -1 N ALA A 103 O VAL A 119 SHEET 4 B 6 VAL A 215 SER A 224 -1 O ALA A 220 N SER A 104 SHEET 5 B 6 LEU A 201 HIS A 209 -1 N VAL A 208 O GLY A 217 SHEET 6 B 6 ALA A 191 SER A 194 -1 N ALA A 191 O ALA A 205 SHEET 1 C 2 MSE A 125 ILE A 127 0 SHEET 2 C 2 MSE D 125 ILE D 127 -1 O SER D 126 N SER A 126 SHEET 1 D 2 VAL B 58 SER B 61 0 SHEET 2 D 2 ARG B 64 LEU B 67 -1 O ARG B 64 N SER B 61 SHEET 1 E 6 ARG B 134 PRO B 136 0 SHEET 2 E 6 ASP B 112 VAL B 119 -1 N VAL B 113 O VAL B 135 SHEET 3 E 6 ALA B 103 ASP B 109 -1 N ASP B 109 O ASP B 112 SHEET 4 E 6 VAL B 215 SER B 224 -1 O VAL B 218 N GLY B 106 SHEET 5 E 6 LEU B 201 HIS B 209 -1 N VAL B 208 O GLY B 217 SHEET 6 E 6 ALA B 191 SER B 194 -1 N THR B 193 O SER B 203 SHEET 1 F 2 VAL C 58 SER C 61 0 SHEET 2 F 2 ARG C 64 LEU C 67 -1 O ARG C 64 N SER C 61 SHEET 1 G 6 ARG C 134 PRO C 136 0 SHEET 2 G 6 ASP C 112 VAL C 119 -1 N VAL C 113 O VAL C 135 SHEET 3 G 6 ALA C 103 ASP C 109 -1 N ASP C 109 O ASP C 112 SHEET 4 G 6 VAL C 215 SER C 224 -1 O ALA C 220 N SER C 104 SHEET 5 G 6 LEU C 201 HIS C 209 -1 N VAL C 208 O GLY C 217 SHEET 6 G 6 ALA C 191 SER C 194 -1 N ALA C 191 O ALA C 205 SHEET 1 H 2 VAL D 58 SER D 61 0 SHEET 2 H 2 ARG D 64 LEU D 67 -1 O ARG D 64 N SER D 61 SHEET 1 I 6 ARG D 134 PRO D 136 0 SHEET 2 I 6 ASP D 112 VAL D 119 -1 N VAL D 113 O VAL D 135 SHEET 3 I 6 ALA D 103 ASP D 109 -1 N ALA D 103 O VAL D 119 SHEET 4 I 6 VAL D 215 SER D 224 -1 O ALA D 220 N SER D 104 SHEET 5 I 6 LEU D 201 HIS D 209 -1 N VAL D 208 O GLY D 217 SHEET 6 I 6 ALA D 191 SER D 194 -1 N ALA D 191 O ALA D 205 LINK C ALA A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N PRO A 90 1555 1555 1.35 LINK C ILE A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N SER A 126 1555 1555 1.34 LINK C SER A 141 N MSE A 142 1555 1555 1.34 LINK C MSE A 142 N GLY A 143 1555 1555 1.32 LINK C ASP A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N GLY A 253 1555 1555 1.33 LINK C ALA B 88 N MSE B 89 1555 1555 1.34 LINK C MSE B 89 N PRO B 90 1555 1555 1.36 LINK C ILE B 124 N MSE B 125 1555 1555 1.34 LINK C MSE B 125 N SER B 126 1555 1555 1.33 LINK C SER B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLY B 143 1555 1555 1.33 LINK C ASP B 251 N MSE B 252 1555 1555 1.34 LINK C MSE B 252 N GLY B 253 1555 1555 1.33 LINK C ALA C 88 N MSE C 89 1555 1555 1.33 LINK C MSE C 89 N PRO C 90 1555 1555 1.35 LINK C ILE C 124 N MSE C 125 1555 1555 1.34 LINK C MSE C 125 N SER C 126 1555 1555 1.33 LINK C SER C 141 N MSE C 142 1555 1555 1.32 LINK C MSE C 142 N GLY C 143 1555 1555 1.33 LINK C ASP C 251 N MSE C 252 1555 1555 1.34 LINK C MSE C 252 N GLY C 253 1555 1555 1.33 LINK C ALA D 88 N MSE D 89 1555 1555 1.33 LINK C MSE D 89 N PRO D 90 1555 1555 1.35 LINK C ILE D 124 N MSE D 125 1555 1555 1.33 LINK C MSE D 125 N SER D 126 1555 1555 1.33 LINK C SER D 141 N MSE D 142 1555 1555 1.34 LINK C MSE D 142 N GLY D 143 1555 1555 1.33 LINK C ASP D 251 N MSE D 252 1555 1555 1.34 LINK C MSE D 252 N GLY D 253 1555 1555 1.33 CRYST1 96.407 186.520 126.360 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007914 0.00000 MASTER 374 0 16 37 34 0 0 6 0 0 0 80 END